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Commit cf484755 authored by Timothy ODonnell's avatar Timothy ODonnell
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fixes

parent b8c7d511
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#!/bin/bash #!/bin/bash
#BSUB -J MHCf # Job name #BSUB -J MHCf # Job name
#BSUB -P acc_nkcancer # allocation account or Unix group #BSUB -P acc_nkcancer # allocation account or Unix group
#BSUB -q gpu # queue #BSUB -q premium # queue
#BSUB -R rusage[ngpus_excl_p=1] # 1 exclusive GPU
#BSUB -R span[hosts=1] # one node #BSUB -R span[hosts=1] # one node
#BSUB -n 1 # number of compute cores #BSUB -n 1 # number of compute cores
#BSUB -W 10:00 # walltime in HH:MM #BSUB -W 40:00 # walltime in HH:MM
#BSUB -R rusage[mem=20000] # mb memory requested #BSUB -R rusage[mem=45000] # mb memory requested
#BSUB -o %J.stdout # output log (%J : JobID) #BSUB -o %J.stdout # output log (%J : JobID)
#BSUB -eo %J.stderr # error log #BSUB -eo %J.stderr # error log
#BSUB -L /bin/bash # Initialize the execution environment #BSUB -L /bin/bash # Initialize the execution environment
...@@ -24,19 +23,6 @@ export PYTHONUNBUFFERED=1 ...@@ -24,19 +23,6 @@ export PYTHONUNBUFFERED=1
export KMP_SETTINGS=1 export KMP_SETTINGS=1
free -m free -m
module add cuda/10.0.130
module list module list
export CUDNN_HOME=/hpc/users/odonnt02/oss/cudnn/cuda
export LD_LIBRARY_PATH=$CUDNN_HOME/lib64:$LD_LIBRARY_PATH
export CMAKE_LIBRARY_PATH=$CUDNN_HOME/lib64:$CMAKE_LIBRARY_PATH
export INCLUDE_PATH=$CUDNN_HOME/include:$INCLUDE_PATH
export C_INCLUDE_PATH=$CUDNN_HOME/include:$C_INCLUDE_PATH
export CPLUS_INCLUDE_PATH=$CUDNN_HOME/include:$CPLUS_INCLUDE_PATH
export CMAKE_INCLUDE_PATH=$CUDNN_HOME/include:$CMAKE_INCLUDE_PATH
python -c 'import tensorflow as tf ; print("GPU AVAILABLE" if tf.test.is_gpu_available() else "GPU NOT AVAILABLE")'
env env
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