From cf484755ee3ba8bb2b5f2155eeff76864527f490 Mon Sep 17 00:00:00 2001
From: Timothy ODonnell <odonnt02@li03c03.chimera.hpc.mssm.edu>
Date: Mon, 27 Jan 2020 09:49:28 -0500
Subject: [PATCH] fixes
---
.../cluster_submit_script_header.mssm_hpc.lsf | 20 +++----------------
1 file changed, 3 insertions(+), 17 deletions(-)
diff --git a/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf b/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf
index a0783f2e..11c3d680 100644
--- a/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf
+++ b/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf
@@ -1,12 +1,11 @@
#!/bin/bash
#BSUB -J MHCf # Job name
#BSUB -P acc_nkcancer # allocation account or Unix group
-#BSUB -q gpu # queue
-#BSUB -R rusage[ngpus_excl_p=1] # 1 exclusive GPU
+#BSUB -q premium # queue
#BSUB -R span[hosts=1] # one node
#BSUB -n 1 # number of compute cores
-#BSUB -W 10:00 # walltime in HH:MM
-#BSUB -R rusage[mem=20000] # mb memory requested
+#BSUB -W 40:00 # walltime in HH:MM
+#BSUB -R rusage[mem=45000] # mb memory requested
#BSUB -o %J.stdout # output log (%J : JobID)
#BSUB -eo %J.stderr # error log
#BSUB -L /bin/bash # Initialize the execution environment
@@ -24,19 +23,6 @@ export PYTHONUNBUFFERED=1
export KMP_SETTINGS=1
free -m
-
-module add cuda/10.0.130
module list
-
-export CUDNN_HOME=/hpc/users/odonnt02/oss/cudnn/cuda
-export LD_LIBRARY_PATH=$CUDNN_HOME/lib64:$LD_LIBRARY_PATH
-export CMAKE_LIBRARY_PATH=$CUDNN_HOME/lib64:$CMAKE_LIBRARY_PATH
-export INCLUDE_PATH=$CUDNN_HOME/include:$INCLUDE_PATH
-export C_INCLUDE_PATH=$CUDNN_HOME/include:$C_INCLUDE_PATH
-export CPLUS_INCLUDE_PATH=$CUDNN_HOME/include:$CPLUS_INCLUDE_PATH
-export CMAKE_INCLUDE_PATH=$CUDNN_HOME/include:$CMAKE_INCLUDE_PATH
-
-python -c 'import tensorflow as tf ; print("GPU AVAILABLE" if tf.test.is_gpu_available() else "GPU NOT AVAILABLE")'
-
env
--
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