diff --git a/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf b/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf index a0783f2ed9b2b3b32865d3d700aaf531a8056c47..11c3d680d1929e8095910afe993714f5dbefdc3b 100644 --- a/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf +++ b/downloads-generation/data_evaluation/cluster_submit_script_header.mssm_hpc.lsf @@ -1,12 +1,11 @@ #!/bin/bash #BSUB -J MHCf # Job name #BSUB -P acc_nkcancer # allocation account or Unix group -#BSUB -q gpu # queue -#BSUB -R rusage[ngpus_excl_p=1] # 1 exclusive GPU +#BSUB -q premium # queue #BSUB -R span[hosts=1] # one node #BSUB -n 1 # number of compute cores -#BSUB -W 10:00 # walltime in HH:MM -#BSUB -R rusage[mem=20000] # mb memory requested +#BSUB -W 40:00 # walltime in HH:MM +#BSUB -R rusage[mem=45000] # mb memory requested #BSUB -o %J.stdout # output log (%J : JobID) #BSUB -eo %J.stderr # error log #BSUB -L /bin/bash # Initialize the execution environment @@ -24,19 +23,6 @@ export PYTHONUNBUFFERED=1 export KMP_SETTINGS=1 free -m - -module add cuda/10.0.130 module list - -export CUDNN_HOME=/hpc/users/odonnt02/oss/cudnn/cuda -export LD_LIBRARY_PATH=$CUDNN_HOME/lib64:$LD_LIBRARY_PATH -export CMAKE_LIBRARY_PATH=$CUDNN_HOME/lib64:$CMAKE_LIBRARY_PATH -export INCLUDE_PATH=$CUDNN_HOME/include:$INCLUDE_PATH -export C_INCLUDE_PATH=$CUDNN_HOME/include:$C_INCLUDE_PATH -export CPLUS_INCLUDE_PATH=$CUDNN_HOME/include:$CPLUS_INCLUDE_PATH -export CMAKE_INCLUDE_PATH=$CUDNN_HOME/include:$CMAKE_INCLUDE_PATH - -python -c 'import tensorflow as tf ; print("GPU AVAILABLE" if tf.test.is_gpu_available() else "GPU NOT AVAILABLE")' - env