Commits · e93299b6030d9be242f5ceeb12a4179a6ab2a3f2 · Patrick Skillman-Lawrence / mhc_rank

Mar 17, 2017
- Merge pull request #80 from hammerlab/keras-layers-for-variable-length-sequences · e93299b6
  Alex Rubinsteyn authored 8 years ago
  
  adding keras layers for dealing with masks in variable length sequence inputs
  e93299b6
Feb 16, 2017
- Merge pull request #82 from hammerlab/antigen-presentation · 34af636f
  Tim O'Donnell authored 8 years ago
  
  Antigen presentation
  34af636f
- fix · 54b67d2b
  Tim O'Donnell authored 8 years ago
  
  54b67d2b
- more output in tests · 3c0e8626
  Tim O'Donnell authored 8 years ago
  
  3c0e8626
- Add MHCBindingComponentModelBase · 253304d0
  Tim O'Donnell authored 8 years ago
  
  253304d0
Feb 15, 2017
- fix · 0b466f39
  Tim O'Donnell authored 8 years ago
  
  0b466f39
- more tests · dec7c6dc
  Tim O'Donnell authored 8 years ago
  
  dec7c6dc
- fix · dfe6f88f
  Tim O'Donnell authored 8 years ago
  
  dfe6f88f
Feb 14, 2017
- Ensemble fitting · 9d8c9efa
  Tim O'Donnell authored 8 years ago
  
  9d8c9efa
Feb 13, 2017
- fix · d583f540
  Tim O'Donnell authored 8 years ago
  
  d583f540
Feb 12, 2017
- fix · de179804
  Tim O'Donnell authored 8 years ago
  
  de179804
- Simpler cache handling · 1c1e75c6
  Tim O'Donnell authored 8 years ago
  
  1c1e75c6
Feb 11, 2017
- More test output · 337b1039
  Tim O'Donnell authored 8 years ago
  
  337b1039
- codes cleanup · 14cf5749
  Tim O'Donnell authored 8 years ago
  
  14cf5749
- Add test for PresentationModel · ec75a7b6
  Tim O'Donnell authored 8 years ago
  
  ec75a7b6
Feb 10, 2017
- Initial implementation of antigen presentation prediction infrastructure · dfdbd8a4
  Tim O'Donnell authored 8 years ago
  
  dfdbd8a4
- remove spurious absolute mhcflurry import · fd6fdd75
  Tim O'Donnell authored 8 years ago
  
  fd6fdd75
- Merge pull request #81 from hammerlab/kubeface-model-training · 8f08993d
  Tim O'Donnell authored 8 years ago
  
  Kubeface model training
  8f08993d
- Comment tweaks · 9d5d36b0
  Tim O'Donnell authored 8 years ago
  
  9d5d36b0
Feb 09, 2017
- fix · c3cf271d
  Tim O'Donnell authored 8 years ago
  
  c3cf271d
- fixes · 2015dfd6
  Tim O'Donnell authored 8 years ago
  
  2015dfd6
- got rid of package_metadata · ab4bf514
  Alex Rubinsteyn authored 8 years ago
  
  ab4bf514
- got rid of package_metadata · 5359dc7f
  Alex Rubinsteyn authored 8 years ago
  
  5359dc7f
- got rid of unnecessary PY2 import · 33218895
  Alex Rubinsteyn authored 8 years ago
  
  33218895
- added comment to DropMask · 5f3b0849
  Alex Rubinsteyn authored 8 years ago
  
  5f3b0849
Feb 08, 2017
- adding keras layers for dealing with masks in variable length sequence inputs · 1a257560
  Alex Rubinsteyn authored 8 years ago
  
  1a257560
Feb 04, 2017
- Update README.md · 41c0c018
  Tim O'Donnell authored 8 years ago
  
  41c0c018
Jan 09, 2017
- fixes for kubeface-based model training · 33dd8ee8
  Tim O'Donnell authored 8 years ago
  
  33dd8ee8
- Swith to using parallel_backend.map instead of parallel_backend.submit, to be... · fc26e687
  Tim O'Donnell authored 8 years ago
  
  Swith to using parallel_backend.map instead of parallel_backend.submit, to be compatable with kubeface
  fc26e687
- basic support for kubeface · bc78f82f
  Tim O'Donnell authored 8 years ago
  
  bc78f82f
- Merge pull request #73 from hammerlab/fix-setup-for-py3 · 4e3ccd35
  Alex Rubinsteyn authored 8 years ago
  
  only install futures for PY2
  4e3ccd35
- use major version by name in setup · e443254b
  Alex Rubinsteyn authored 8 years ago
  
  e443254b
- allow commas in peptide and allele strings for mhcflurry-predict, incrememented keras version · 9ef82bae
  Alex Rubinsteyn authored 8 years ago
  
  9ef82bae
- only install futures for PY2 · c116016a
  Alex Rubinsteyn authored 8 years ago
  
  c116016a
Dec 11, 2016
- Merge pull request #68 from hammerlab/pin-keras · fd492b92
  Tim O'Donnell authored 8 years ago
  
  Pin keras version
  fd492b92
- Pin keras version · 5bb1f547
  Tim O'Donnell authored 8 years ago
  
  Pin keras version. Also add note on KERAS_BACKEND to README.md. Closes #67. Closes #65.
  5bb1f547
Sep 26, 2016
- Merge pull request #60 from hammerlab/additions2 · eeb07c9a
  Tim O'Donnell authored 8 years ago
  
  Kim2014 comparison, mhcflurry-predict tool, reimplement parallelization with futures
  eeb07c9a
- update readme · 00d545ec
  Tim O'Donnell authored 8 years ago
  
  00d545ec
- Add notebook of examples · 32bdcb55
  Tim O'Donnell authored 8 years ago
  
  32bdcb55
- Update docs · 03f44c8f
  Tim O'Donnell authored 8 years ago
  
  03f44c8f