Merge pull request #60 from hammerlab/additions2
Kim2014 comparison, mhcflurry-predict tool, reimplement parallelization with futures
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- .travis.yml 8 additions, 1 deletion.travis.yml
- Dockerfile 3 additions, 0 deletionsDockerfile
- README.md 21 additions, 2 deletionsREADME.md
- downloads-generation/models_class1_allele_specific_single/GENERATE.sh 1 addition, 0 deletions...neration/models_class1_allele_specific_single/GENERATE.sh
- downloads-generation/models_class1_allele_specific_single_kim2014_only/GENERATE.sh 54 additions, 0 deletions...ls_class1_allele_specific_single_kim2014_only/GENERATE.sh
- downloads-generation/models_class1_allele_specific_single_kim2014_only/README.md 4 additions, 0 deletions...dels_class1_allele_specific_single_kim2014_only/README.md
- downloads-generation/models_class1_allele_specific_single_kim2014_only/imputer.json 8 additions, 0 deletions...s_class1_allele_specific_single_kim2014_only/imputer.json
- downloads-generation/models_class1_allele_specific_single_kim2014_only/models.py 16 additions, 0 deletions...dels_class1_allele_specific_single_kim2014_only/models.py
- examples/class1_allele_specific_models.ipynb 1307 additions, 0 deletionsexamples/class1_allele_specific_models.ipynb
- mhcflurry/__init__.py 0 additions, 2 deletionsmhcflurry/__init__.py
- mhcflurry/class1_allele_specific/cross_validation.py 24 additions, 39 deletionsmhcflurry/class1_allele_specific/cross_validation.py
- mhcflurry/class1_allele_specific/cv_and_train_command.py 49 additions, 70 deletionsmhcflurry/class1_allele_specific/cv_and_train_command.py
- mhcflurry/class1_allele_specific/load.py 2 additions, 2 deletionsmhcflurry/class1_allele_specific/load.py
- mhcflurry/class1_allele_specific/train.py 16 additions, 24 deletionsmhcflurry/class1_allele_specific/train.py
- mhcflurry/common.py 4 additions, 0 deletionsmhcflurry/common.py
- mhcflurry/dataset.py 3 additions, 1 deletionmhcflurry/dataset.py
- mhcflurry/parallelism.py 73 additions, 20 deletionsmhcflurry/parallelism.py
- mhcflurry/predict.py 28 additions, 3 deletionsmhcflurry/predict.py
- mhcflurry/predict_command.py 159 additions, 0 deletionsmhcflurry/predict_command.py
- setup.py 2 additions, 2 deletionssetup.py
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