mhcflurry/antigen_presentation/README.md

mhcflurry/antigen_presentation/__init__.py

mhcflurry/antigen_presentation/decoy_strategies/__init__.py

...y/antigen_presentation/decoy_strategies/decoy_strategy.py

...presentation/decoy_strategies/same_transcripts_as_hits.py

...y/antigen_presentation/decoy_strategies/uniform_random.py

mhcflurry/antigen_presentation/percent_rank_transform.py

...en_presentation/presentation_component_models/__init__.py

..._presentation/presentation_component_models/expression.py

...esentation_component_models/fixed_affinity_predictions.py

...onent_models/fixed_per_peptide_and_transcript_quantity.py

...esentation_component_models/fixed_per_peptide_quantity.py

...tion_component_models/mhc_binding_component_model_base.py

...ation/presentation_component_models/mhcflurry_released.py

...resentation_component_models/mhcflurry_trained_on_hits.py

...entation_component_models/presentation_component_model.py

mhcflurry/antigen_presentation/presentation_model.py

mhcflurry/class1_allele_specific/scoring.py

mhcflurry/class1_allele_specific/train.py

mhcflurry/common.py