Commits · 63d1a232ddeb7b481d560724122fa7769c8478d7 · Patrick Skillman-Lawrence / mhc_rank

Jul 31, 2017
- Train models only on alleles with >=200 IEDB measurements instead of 100 · 63d1a232
  Tim O'Donnell authored 7 years ago
  
  63d1a232
- Parallelize models_class1_experiments1 GENERATE script · c055ef50
  Tim O'Donnell authored 7 years ago
  
  c055ef50
Jul 30, 2017
- Fix incorrect L1 hyperparameter in hyperparameters-0local_noL1.json · 3ba96d64
  Tim O'Donnell authored 7 years ago
  
  3ba96d64
Jul 27, 2017
- Bump keras version, set mhcflurry version to 0.9.1 · 4ef1f529
  Tim O'Donnell authored 7 years ago
  
  4ef1f529
- Merge pull request #93 from hammerlab/script-updates · caff68b0
  Tim O'Donnell authored 7 years ago
  
  Small updates
  caff68b0
- Script and experiment updates · 7f1e6c99
  Tim O'Donnell authored 7 years ago
  
  * Add more experiments to models_class1_experiments * Add `--quantitative-only` flag to training script * Add `--no-throw` flag to prediction script
  7f1e6c99
Jun 26, 2017
- Merge pull request #90 from hammerlab/timodonnell-patch-1 · 85b5a3f1
  Tim O'Donnell authored 7 years ago
  
  Bump travis python 3 version to 3.6
  85b5a3f1
Jun 22, 2017
- Bump travis python 3 version to 3.6 · faf93568
  Tim O'Donnell authored 7 years ago
  
  faf93568
Jun 13, 2017
- Merge pull request #89 from hammerlab/get-supported · 6836ead2
  B. Arman Aksoy authored 7 years ago
  
  Add helper functions for potential mhcflurry wrappers
  6836ead2
Jun 12, 2017
- better group CLI options for clarity · 352efd2f
  B. Arman Aksoy authored 7 years ago
  
  352efd2f
Jun 11, 2017
- allow get a list of supported alleles or peptide lengths from CLI · 334907bf
  B. Arman Aksoy authored 7 years ago
  
  334907bf
May 25, 2017
- Update author email in setup.py to be valid format · 8b07269a
  Tim O'Donnell authored 7 years ago
  
  8b07269a
- Merge pull request #86 from hammerlab/rewrite1 · 03753284
  Tim O'Donnell authored 7 years ago
  
  MHCflurry 0.9
  03753284
- Switch downloads_command to use mkstemp instead of NamedTemporaryFile for... · 503c8492
  Tim O'Donnell authored 7 years ago
  
  Switch downloads_command to use mkstemp instead of NamedTemporaryFile for windows support. Fixes #79
  503c8492
- small tweaks · 62794808
  Tim O'Donnell authored 7 years ago
  
  62794808
- make tensorflow backend the default · 6b1e94d5
  Tim O'Donnell authored 7 years ago
  
  6b1e94d5
- Test both tensorflow and theano on travis · d31f2013
  Tim O'Donnell authored 7 years ago
  
  d31f2013
- Fix test, update travis to run tests using both tensorflow and theano backends · 04c85f27
  Tim O'Donnell authored 7 years ago
  
  04c85f27
- Add more output to mhcflurry-predict · 6fa483d7
  Tim O'Donnell authored 7 years ago
  
  6fa483d7
- Add models_class1_experiments1 download, tweak travis config, attempt to fix test for py2.7 · e5a7ee94
  Tim O'Donnell authored 7 years ago
  
  e5a7ee94
May 24, 2017
- Update travis and package requirements · 0d72da05
  Tim O'Donnell authored 7 years ago
  
  0d72da05
- fix test · 2b746b69
  Tim O'Donnell authored 7 years ago
  
  2b746b69
- Fix test · d21219db
  Tim O'Donnell authored 7 years ago
  
  d21219db
- refactor tests · 6415b419
  Tim O'Donnell authored 7 years ago
  
  6415b419
- update readme · daf136ee
  Tim O'Donnell authored 7 years ago
  
  daf136ee
- Update example notebook and fix tests · 7f6bffeb
  Tim O'Donnell authored 7 years ago
  
  7f6bffeb
- fix · 4220fbbc
  Tim O'Donnell authored 7 years ago
  
  4220fbbc
- Fix test · fd7a2286
  Tim O'Donnell authored 7 years ago
  
  fd7a2286
- Fix antigen processing errors, fix lint issues · 4d9c164b
  Tim O'Donnell authored 7 years ago
  
  4d9c164b
- updates · 37aa3f37
  Tim O'Donnell authored 7 years ago
  
  37aa3f37
- change models_class1_experiments1 to run each experiment in separate scripts · 1c37ad3a
  Tim O'Donnell authored 7 years ago
  
  1c37ad3a
May 23, 2017
- update · d154bcbd
  Tim O'Donnell authored 7 years ago
  
  d154bcbd
- updates · 3ec5dbe1
  Tim O'Donnell authored 7 years ago
  
  3ec5dbe1
- docs update · 057e272a
  Tim O'Donnell authored 7 years ago
  
  057e272a
May 22, 2017
- update requirements · 94f4c437
  Tim O'Donnell authored 7 years ago
  
  94f4c437
- rename · a9abf6a5
  Tim O'Donnell authored 7 years ago
  
  a9abf6a5
- Add models_class1_experimental_variations1 · 3239e437
  Tim O'Donnell authored 7 years ago
  
  3239e437
- fix peptide encoding · f73e73b2
  Tim O'Donnell authored 7 years ago
  
  f73e73b2
May 21, 2017
- add test · efb02b5d
  Tim O'Donnell authored 7 years ago
  
  efb02b5d
- fixes · 5737ed7a
  Tim O'Donnell authored 7 years ago
  
  5737ed7a