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Patrick Skillman-Lawrence
mhc_rank
Commits
c055ef50
Commit
c055ef50
authored
7 years ago
by
Tim O'Donnell
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Parallelize models_class1_experiments1 GENERATE script
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downloads-generation/models_class1_experiments1/GENERATE.sh
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c055ef50
...
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@@ -31,7 +31,7 @@ time mhcflurry-class1-train-allele-specific-models \
--only-quantitative
\
--hyperparameters
hyperparameters-standard.json
\
--out-models-dir
models-standard-quantitative
\
--min-measurements-per-allele
100
--min-measurements-per-allele
100
&
# Model variations on qualitative + quantitative
for
mod
in
0local_noL1 0local 1local dense16 dense64 noL1
...
...
@@ -42,8 +42,9 @@ do
--data
"
$(
mhcflurry-downloads path data_curated
)
/curated_training_data.csv.bz2"
\
--hyperparameters
hyperparameters-
${
mod
}
.json
\
--out-models-dir
models-
${
mod
}
\
--min-measurements-per-allele
100
--min-measurements-per-allele
100
&
done
wait
cp
$SCRIPT_ABSOLUTE_PATH
.
bzip2 LOG.txt
...
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