Commits · 2ab2dbd978df5974e173713fb74501c5112801a1 · Patrick Skillman-Lawrence / mhc_rank · GitLab

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Apr 28, 2016
- moving helpers for performing dataset imputations from experiments and added a few tests · 2ab2dbd9
  Alex Rubinsteyn authored 8 years ago
  
  2ab2dbd9
- Merge pull request #18 from hammerlab/small-fixes · 00b17305
  Alex Rubinsteyn authored 8 years ago
  
  Minor fixes
  00b17305
- Merge pull request #17 from hammerlab/move-imputation-to-training-script · 04591deb
  Alex Rubinsteyn authored 8 years ago
  
  Copying imputation and soft-pretraining logic from experiments to main training script
  04591deb
Apr 21, 2016
- Minor fixes · eefe769e
  Tim O'Donnell authored 8 years ago
  
  - Add default values and usage to argparse help messages - Require theano >=0.8.2 (was getting errors instantiating a model at 0.7.0)
  eefe769e
- added tests for data.load_dataframe · d2afcbcb
  Alex Rubinsteyn authored 8 years ago
  
  d2afcbcb
Apr 20, 2016
- Merge pull request #14 from hammerlab/fix-training-script · 713707b3
  Alex Rubinsteyn authored 8 years ago
  
  Fix training script
  713707b3
- added coveralls badge · 88c2f819
  Alex Rubinsteyn authored 8 years ago
  
  88c2f819
- small linting fix · 032ffb6e
  Alex Rubinsteyn authored 8 years ago
  
  032ffb6e
- tried adding cvxopt to conda install on travis · 7d23fb9e
  Alex Rubinsteyn authored 8 years ago
  
  7d23fb9e
- added more dependencies to requirements · 4b10ba2e
  Alex Rubinsteyn authored 8 years ago
  
  4b10ba2e
- install pylint on travis · ef789bf6
  Alex Rubinsteyn authored 8 years ago
  
  ef789bf6
- fixed a bunch of linting errors in scripts which may not survive in the future · acb68a36
  Alex Rubinsteyn authored 8 years ago
  
  acb68a36
- changed permissions on lint.sh · a2b1146e
  Alex Rubinsteyn authored 8 years ago
  
  a2b1146e
- train models for longer on Travis · 4b75e9af
  Alex Rubinsteyn authored 8 years ago
  
  4b75e9af
- fixed propagation of allow_unknown_amino_acids through dataset loading · 115bfdd5
  Alex Rubinsteyn authored 8 years ago
  
  115bfdd5
- fixed sequence in MAGE test, added Titin test · cc224e7a
  Alex Rubinsteyn authored 8 years ago
  
  cc224e7a
- input needs to be 21 amino acids · f0cb596e
  Alex Rubinsteyn authored 8 years ago
  
  f0cb596e
- fixed writing of combined CSV · bb56f3be
  Alex Rubinsteyn authored 8 years ago
  
  bb56f3be
Apr 19, 2016
- restrict alleles in travis setup · ddd98892
  Alex Rubinsteyn authored 8 years ago
  
  ddd98892
- split up filtering of IEDB MHC dataframe · 1d2d7228
  Alex Rubinsteyn authored 8 years ago
  
  1d2d7228
- added h5py to conda install · 6859d990
  Alex Rubinsteyn authored 8 years ago
  
  6859d990
- simplified download scripts to work locally, need to eventually replace with Python · 35c09c17
  Alex Rubinsteyn authored 8 years ago
  
  35c09c17
- added suffixes to Travis scripts in setup · 7ce7d7f5
  Alex Rubinsteyn authored 8 years ago
  
  7ce7d7f5
- added badge for Travis to README · 0326921a
  Alex Rubinsteyn authored 8 years ago
  
  0326921a
- updated README for mhcflurry · 19d2bef8
  Alex Rubinsteyn authored 8 years ago
  
  19d2bef8
- added back missing scripts · c4969f69
  Alex Rubinsteyn authored 8 years ago
  
  c4969f69
- added scripts to download data and train models to Travis · eec10d07
  Alex Rubinsteyn authored 8 years ago
  
  eec10d07
- train very limited models on travis · de4615fa
  Alex Rubinsteyn authored 8 years ago
  
  de4615fa
- added back some basic imports into __init__ · cadc5480
  Alex Rubinsteyn authored 8 years ago
  
  cadc5480
- moved script directory, added scripts to setup.py · bd589e3e
  Alex Rubinsteyn authored 8 years ago
  
  bd589e3e
- added requirements.txt · 42425311
  Alex Rubinsteyn authored 8 years ago
  
  42425311
- don't try to install requirements on travis · ac8c408c
  Alex Rubinsteyn authored 8 years ago
  
  ac8c408c
- added known epitope tests · a59fe505
  Alex Rubinsteyn authored 8 years ago
  
  a59fe505
- training script seems to work · eee968c9
  Alex Rubinsteyn authored 8 years ago
  
  eee968c9
Apr 18, 2016
- added LR to hypeparameters · 79b04065
  Alex Rubinsteyn authored 8 years ago
  
  79b04065
- adding options to training script and updating to work with new predictor class · 6d52392f
  Alex Rubinsteyn authored 8 years ago
  
  6d52392f
- added prediction data from NetMHC dataset paper · 7cb4b493
  Alex Rubinsteyn authored 8 years ago
  
  7cb4b493
- renamed travis file · 7fc70ec6
  Alex Rubinsteyn authored 8 years ago
  
  7fc70ec6
- added travis config and lint script · 6595436f
  Alex Rubinsteyn authored 8 years ago
  
  6595436f
Apr 07, 2016
- Merge pull request #13 from hammerlab/ensembles-of-predictors · e4d6ae74
  Alex Rubinsteyn authored 8 years ago
  
  Ensembles of predictors
  e4d6ae74