Merge pull request #14 from hammerlab/fix-training-script
Fix training script
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- .travis.yml 15 additions, 1 deletion.travis.yml
- README.md 5 additions, 4 deletionsREADME.md
- experiments/benchmark_mhci_reliability/binding/bd2009.1/quick-check-cv-data.py 44 additions, 48 deletions..._mhci_reliability/binding/bd2009.1/quick-check-cv-data.py
- experiments/best-synthetic-data-hyperparams.py 1 addition, 1 deletionexperiments/best-synthetic-data-hyperparams.py
- experiments/cross_validation_affinity_data.py 3 additions, 1 deletionexperiments/cross_validation_affinity_data.py
- experiments/evaluate-predictions.py 1 addition, 3 deletionsexperiments/evaluate-predictions.py
- experiments/extend-test-predictions.py 16 additions, 34 deletionsexperiments/extend-test-predictions.py
- experiments/matrix-completion-accuracy.py 1 addition, 1 deletionexperiments/matrix-completion-accuracy.py
- experiments/matrix-completion-hyperparameter-search.py 4 additions, 4 deletionsexperiments/matrix-completion-hyperparameter-search.py
- experiments/model-selection.py 3 additions, 7 deletionsexperiments/model-selection.py
- experiments/model_selection_helpers.py 5 additions, 2 deletionsexperiments/model_selection_helpers.py
- lint.sh 0 additions, 0 deletionslint.sh
- mhcflurry/__init__.py 2 additions, 17 deletionsmhcflurry/__init__.py
- mhcflurry/class1_allele_specific_hyperparameters.py 62 additions, 3 deletionsmhcflurry/class1_allele_specific_hyperparameters.py
- mhcflurry/class1_binding_predictor.py 8 additions, 4 deletionsmhcflurry/class1_binding_predictor.py
- mhcflurry/data.py 47 additions, 15 deletionsmhcflurry/data.py
- mhcflurry/package_metadata.py 2 additions, 0 deletionsmhcflurry/package_metadata.py
- mhcflurry/paths.py 4 additions, 1 deletionmhcflurry/paths.py
- mhcflurry/peptide_encoding.py 26 additions, 9 deletionsmhcflurry/peptide_encoding.py
- mhcflurry/predict.py 5 additions, 7 deletionsmhcflurry/predict.py
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