- Aug 03, 2017
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Tim O'Donnell authored
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- Jul 31, 2017
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Tim O'Donnell authored
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- Jul 27, 2017
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Tim O'Donnell authored
* Add more experiments to models_class1_experiments * Add `--quantitative-only` flag to training script * Add `--no-throw` flag to prediction script
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- May 24, 2017
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Tim O'Donnell authored
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- May 23, 2017
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Tim O'Donnell authored
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- May 22, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
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- May 17, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
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- Feb 08, 2017
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Alex Rubinsteyn authored
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- Sep 15, 2016
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Tim O'Donnell authored
Lazily putting this all in one commit. * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command) * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone) * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`) * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors * make Class1BindingPredictor pickleable and remove old serialization code * move code particular to class 1 allele-specific predictors into its own submodule * remove unused code including arg parsing, plotting, and ensembles * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py) * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed * update README
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