docs updates

docs/conf.py

@@ -76,7 +76,7 @@ master_doc = 'index'
 
 # General information about the project.
 project = 'MHCflurry'
-copyright = '2017, Timothy O\'Donnell'
+copyright = '2019, Timothy O\'Donnell'
 author = 'Timothy O\'Donnell'
 
 # The version info for the project you're documenting, acts as replacement for

docs/index.rst

@@ -7,8 +7,6 @@ MHCflurry documentation
    intro
    commandline_tutorial
    python_tutorial
-   models_supported_alleles
-   models
    commandline_tools
    api
 

docs/models.rst

-Details on the released predictor
-==================================
-
-The released MHCflurry predictor consists of an ensemble of 8-16 models for each
-supported allele. Each model in the ensemble was trained on a random 80% sample
-of the data for the allele, with 10% held out for early stopping and 10%
-held out for model selection. Model selection additionally made use of mass-spec
-data when available for an allele.
-
-The predictions are taken to be the geometric mean of the nM binding affinity
-predictions of the individual models. The script we run to train these models is in
-"downloads-generation/models_class1/GENERATE.sh" in the repository.
-
-
-Alleles
--------------------------------------------------------------
-
-.. include:: /_build/_alleles_info.rst
-
-
-Neural network architectures
--------------------------------------------------------------
-
-.. include:: /_build/_models_info.rst
-

docs/models_supported_alleles.rst

-.. _models_supported_alleles:
-
-Supported alleles and peptide lengths
-=====================================
-
-.. include:: /_build/_models_supported_alleles.rst
\ No newline at end of file