From e7a34fb332980b5f2a470b22a6b6c885f2da1028 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Tue, 10 Sep 2019 11:38:18 -0400
Subject: [PATCH] docs updates
---
docs/conf.py | 2 +-
docs/index.rst | 2 --
docs/models.rst | 25 -------------------------
docs/models_supported_alleles.rst | 6 ------
4 files changed, 1 insertion(+), 34 deletions(-)
delete mode 100644 docs/models.rst
delete mode 100644 docs/models_supported_alleles.rst
diff --git a/docs/conf.py b/docs/conf.py
index 98df4244..3cc86178 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -76,7 +76,7 @@ master_doc = 'index'
# General information about the project.
project = 'MHCflurry'
-copyright = '2017, Timothy O\'Donnell'
+copyright = '2019, Timothy O\'Donnell'
author = 'Timothy O\'Donnell'
# The version info for the project you're documenting, acts as replacement for
diff --git a/docs/index.rst b/docs/index.rst
index 11190d9f..82e479bd 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -7,8 +7,6 @@ MHCflurry documentation
intro
commandline_tutorial
python_tutorial
- models_supported_alleles
- models
commandline_tools
api
diff --git a/docs/models.rst b/docs/models.rst
deleted file mode 100644
index f40d2a00..00000000
--- a/docs/models.rst
+++ /dev/null
@@ -1,25 +0,0 @@
-Details on the released predictor
-==================================
-
-The released MHCflurry predictor consists of an ensemble of 8-16 models for each
-supported allele. Each model in the ensemble was trained on a random 80% sample
-of the data for the allele, with 10% held out for early stopping and 10%
-held out for model selection. Model selection additionally made use of mass-spec
-data when available for an allele.
-
-The predictions are taken to be the geometric mean of the nM binding affinity
-predictions of the individual models. The script we run to train these models is in
-"downloads-generation/models_class1/GENERATE.sh" in the repository.
-
-
-Alleles
--------------------------------------------------------------
-
-.. include:: /_build/_alleles_info.rst
-
-
-Neural network architectures
--------------------------------------------------------------
-
-.. include:: /_build/_models_info.rst
-
diff --git a/docs/models_supported_alleles.rst b/docs/models_supported_alleles.rst
deleted file mode 100644
index 0dd3c94e..00000000
--- a/docs/models_supported_alleles.rst
+++ /dev/null
@@ -1,6 +0,0 @@
-.. _models_supported_alleles:
-
-Supported alleles and peptide lengths
-=====================================
-
-.. include:: /_build/_models_supported_alleles.rst
\ No newline at end of file
--
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