diff --git a/docs/conf.py b/docs/conf.py index 98df4244ca721115c27b62f72aea8c2bf9f6613a..3cc8617895be3a96755e3d67ffc5985ae7fa21cf 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -76,7 +76,7 @@ master_doc = 'index' # General information about the project. project = 'MHCflurry' -copyright = '2017, Timothy O\'Donnell' +copyright = '2019, Timothy O\'Donnell' author = 'Timothy O\'Donnell' # The version info for the project you're documenting, acts as replacement for diff --git a/docs/index.rst b/docs/index.rst index 11190d9fe16b57c86218cd55dd9f2a81d44110e2..82e479bd80d781c0c7f30b3e24997b84b7f7cd18 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -7,8 +7,6 @@ MHCflurry documentation intro commandline_tutorial python_tutorial - models_supported_alleles - models commandline_tools api diff --git a/docs/models.rst b/docs/models.rst deleted file mode 100644 index f40d2a00ebee5f52cb1748af4dc9ff6ae3100707..0000000000000000000000000000000000000000 --- a/docs/models.rst +++ /dev/null @@ -1,25 +0,0 @@ -Details on the released predictor -================================== - -The released MHCflurry predictor consists of an ensemble of 8-16 models for each -supported allele. Each model in the ensemble was trained on a random 80% sample -of the data for the allele, with 10% held out for early stopping and 10% -held out for model selection. Model selection additionally made use of mass-spec -data when available for an allele. - -The predictions are taken to be the geometric mean of the nM binding affinity -predictions of the individual models. The script we run to train these models is in -"downloads-generation/models_class1/GENERATE.sh" in the repository. - - -Alleles -------------------------------------------------------------- - -.. include:: /_build/_alleles_info.rst - - -Neural network architectures -------------------------------------------------------------- - -.. include:: /_build/_models_info.rst - diff --git a/docs/models_supported_alleles.rst b/docs/models_supported_alleles.rst deleted file mode 100644 index 0dd3c94ed86545a3781a904cdcf3b064b8189648..0000000000000000000000000000000000000000 --- a/docs/models_supported_alleles.rst +++ /dev/null @@ -1,6 +0,0 @@ -.. _models_supported_alleles: - -Supported alleles and peptide lengths -===================================== - -.. include:: /_build/_models_supported_alleles.rst \ No newline at end of file