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Commit d32c8f91 authored by Timothy ODonnell's avatar Timothy ODonnell Committed by Tim O'Donnell
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fix

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downloads-generation/data_mass_spec_benchmark/GENERATE.sh
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......@@ -68,7 +68,7 @@ then
echo "Num jobs: $NUM_JOBS"
EXTRA_ARGS+=" --num-jobs $NUM_JOBS --max-tasks-per-worker 1 --gpus $GPUS --max-workers-per-gpu 1"
else
EXTRA_ARGS+=" --cluster-parallelism --cluster-max-retries 3 --cluster-submit-command bsub --cluster-results-workdir ~/mhcflurry-scratch"
EXTRA_ARGS+=" --cluster-parallelism --cluster-max-retries 3 --cluster-submit-command bsub --cluster-results-workdir $HOME/mhcflurry-scratch"
fi
PEPTIDES=$(mhcflurry-downloads path data_mass_spec_annotated)/annotated_ms.csv.bz2
......
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