diff --git a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh index f6dd0a692b18bf731a06e008e743e8a717c9168f..7189ccb2f62f794ff0fa4c46848c42fababec0be 100755 --- a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh +++ b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh @@ -68,7 +68,7 @@ then echo "Num jobs: $NUM_JOBS" EXTRA_ARGS+=" --num-jobs $NUM_JOBS --max-tasks-per-worker 1 --gpus $GPUS --max-workers-per-gpu 1" else - EXTRA_ARGS+=" --cluster-parallelism --cluster-max-retries 3 --cluster-submit-command bsub --cluster-results-workdir ~/mhcflurry-scratch" + EXTRA_ARGS+=" --cluster-parallelism --cluster-max-retries 3 --cluster-submit-command bsub --cluster-results-workdir $HOME/mhcflurry-scratch" fi PEPTIDES=$(mhcflurry-downloads path data_mass_spec_annotated)/annotated_ms.csv.bz2