From d32c8f91bffc63e557396ff71f06d34d155787df Mon Sep 17 00:00:00 2001
From: Timothy ODonnell <odonnt02@li03c03.chimera.hpc.mssm.edu>
Date: Fri, 4 Oct 2019 08:58:16 -0400
Subject: [PATCH] fix
---
downloads-generation/data_mass_spec_benchmark/GENERATE.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
index f6dd0a69..7189ccb2 100755
--- a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
+++ b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
@@ -68,7 +68,7 @@ then
echo "Num jobs: $NUM_JOBS"
EXTRA_ARGS+=" --num-jobs $NUM_JOBS --max-tasks-per-worker 1 --gpus $GPUS --max-workers-per-gpu 1"
else
- EXTRA_ARGS+=" --cluster-parallelism --cluster-max-retries 3 --cluster-submit-command bsub --cluster-results-workdir ~/mhcflurry-scratch"
+ EXTRA_ARGS+=" --cluster-parallelism --cluster-max-retries 3 --cluster-submit-command bsub --cluster-results-workdir $HOME/mhcflurry-scratch"
fi
PEPTIDES=$(mhcflurry-downloads path data_mass_spec_annotated)/annotated_ms.csv.bz2
--
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