fix

downloads-generation/data_evaluation/GENERATE.sh

@@ -184,7 +184,6 @@ do
         cp $SCRIPT_DIR/join_with_precomputed.py .
         echo time python join_with_precomputed.py \
             \""$(pwd)/benchmark.multiallelic.csv.bz2"\" \
-            \""$(mhcflurry-downloads path data_mass_spec_benchmark)/predictions/all.${variant}"\" \
             ${variant} \
             --out "$(pwd)/benchmark.multiallelic.${variant}.csv" >> commands/multiallelic.${variant}.sh
         echo bzip2 -f "$(pwd)/benchmark.multiallelic.${variant}.csv"  >> commands/multiallelic.${variant}.sh

downloads-generation/data_evaluation/join_with_precomputed.py

@@ -17,8 +17,6 @@ parser = argparse.ArgumentParser(usage=__doc__)
 
 parser.add_argument(
     "benchmark")
-parser.add_argument(
-    "precomputed_data")
 parser.add_argument(
     "predictors",
     nargs="+",
@@ -66,7 +64,7 @@ def load_results(dirname, result_df=None, columns=None):
 
 def run():
     args = parser.parse_args(sys.argv[1:])
-    df = pandas.read_csv(args.hits)
+    df = pandas.read_csv(args.benchmark)
 
     df["alleles"] = df.hla.str.split()