From 623394c0bd1b8bc0ad393e097248c77d4726c950 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Sun, 26 Jan 2020 22:26:07 -0500
Subject: [PATCH] fix
---
downloads-generation/data_evaluation/GENERATE.sh | 1 -
downloads-generation/data_evaluation/join_with_precomputed.py | 4 +---
2 files changed, 1 insertion(+), 4 deletions(-)
diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh
index b1c6e04d..4babeee9 100755
--- a/downloads-generation/data_evaluation/GENERATE.sh
+++ b/downloads-generation/data_evaluation/GENERATE.sh
@@ -184,7 +184,6 @@ do
cp $SCRIPT_DIR/join_with_precomputed.py .
echo time python join_with_precomputed.py \
\""$(pwd)/benchmark.multiallelic.csv.bz2"\" \
- \""$(mhcflurry-downloads path data_mass_spec_benchmark)/predictions/all.${variant}"\" \
${variant} \
--out "$(pwd)/benchmark.multiallelic.${variant}.csv" >> commands/multiallelic.${variant}.sh
echo bzip2 -f "$(pwd)/benchmark.multiallelic.${variant}.csv" >> commands/multiallelic.${variant}.sh
diff --git a/downloads-generation/data_evaluation/join_with_precomputed.py b/downloads-generation/data_evaluation/join_with_precomputed.py
index 12ba4d92..9b2c9359 100644
--- a/downloads-generation/data_evaluation/join_with_precomputed.py
+++ b/downloads-generation/data_evaluation/join_with_precomputed.py
@@ -17,8 +17,6 @@ parser = argparse.ArgumentParser(usage=__doc__)
parser.add_argument(
"benchmark")
-parser.add_argument(
- "precomputed_data")
parser.add_argument(
"predictors",
nargs="+",
@@ -66,7 +64,7 @@ def load_results(dirname, result_df=None, columns=None):
def run():
args = parser.parse_args(sys.argv[1:])
- df = pandas.read_csv(args.hits)
+ df = pandas.read_csv(args.benchmark)
df["alleles"] = df.hla.str.split()
--
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