diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh index b1c6e04d6f2a90dea49468ded5105c9be29d85cb..4babeee98ae9c3fb8bddad1725507a4446c9deff 100755 --- a/downloads-generation/data_evaluation/GENERATE.sh +++ b/downloads-generation/data_evaluation/GENERATE.sh @@ -184,7 +184,6 @@ do cp $SCRIPT_DIR/join_with_precomputed.py . echo time python join_with_precomputed.py \ \""$(pwd)/benchmark.multiallelic.csv.bz2"\" \ - \""$(mhcflurry-downloads path data_mass_spec_benchmark)/predictions/all.${variant}"\" \ ${variant} \ --out "$(pwd)/benchmark.multiallelic.${variant}.csv" >> commands/multiallelic.${variant}.sh echo bzip2 -f "$(pwd)/benchmark.multiallelic.${variant}.csv" >> commands/multiallelic.${variant}.sh diff --git a/downloads-generation/data_evaluation/join_with_precomputed.py b/downloads-generation/data_evaluation/join_with_precomputed.py index 12ba4d9241619b9ab6dd1ba52cdaabe45adbbfd6..9b2c9359c62dc8a7a5c54467fcece5c9a92f56bd 100644 --- a/downloads-generation/data_evaluation/join_with_precomputed.py +++ b/downloads-generation/data_evaluation/join_with_precomputed.py @@ -17,8 +17,6 @@ parser = argparse.ArgumentParser(usage=__doc__) parser.add_argument( "benchmark") -parser.add_argument( - "precomputed_data") parser.add_argument( "predictors", nargs="+", @@ -66,7 +64,7 @@ def load_results(dirname, result_df=None, columns=None): def run(): args = parser.parse_args(sys.argv[1:]) - df = pandas.read_csv(args.hits) + df = pandas.read_csv(args.benchmark) df["alleles"] = df.hla.str.split()