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Commit 438a637c authored by Tim O'Donnell's avatar Tim O'Donnell
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Update HEK293 HLA genotype

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......@@ -244,10 +244,15 @@ def handle_pmid_25576301(filename):
def handle_pmid_26992070(*filenames):
"""Ritz, ..., Fugmann Proteomics 2016 [PMID 26992070]""" # WRONG PMID!!!
"""Ritz, ..., Fugmann Proteomics 2016 [PMID 26992070]"""
# Although this publication seems to suggest that HEK293 are C*07:02
# (figure 3B), in a subsequent publication [PMID 28834231] this group
# gives the HEK293 HLA type as HLA‐A*03:01, HLA‐B*07:02, and HLA‐C*07:01.
# We are therefore using the HLA‐C*07:01 (i.e. the latter) typing results
# here.
allele_text = """
Cell line HLA-A 1 HLA-A 2 HLA-B 1 HLA-B 2 HLA-C 1 HLA-C 2
HEK293 03:01 03:01 07:02 07:02 07:02 07:02
HEK293 03:01 03:01 07:02 07:02 07:01 07:01
HL-60 01:01 01:01 57:01 57:01 06:02 06:02
RPMI8226 30:01 68:02 15:03 15:10 02:10 03:04
MAVER-1 24:02 26:01 38:01 44:02 05:01 12:03
......
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