From 438a637c27b5221961ccb843130361a5b3dad78b Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Wed, 30 Oct 2019 13:29:48 -0400
Subject: [PATCH] Update HEK293 HLA genotype
---
downloads-generation/data_curated/curate_ms_by_pmid.py | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/downloads-generation/data_curated/curate_ms_by_pmid.py b/downloads-generation/data_curated/curate_ms_by_pmid.py
index 4c3ac8f8..91c0db5d 100755
--- a/downloads-generation/data_curated/curate_ms_by_pmid.py
+++ b/downloads-generation/data_curated/curate_ms_by_pmid.py
@@ -244,10 +244,15 @@ def handle_pmid_25576301(filename):
def handle_pmid_26992070(*filenames):
- """Ritz, ..., Fugmann Proteomics 2016 [PMID 26992070]""" # WRONG PMID!!!
+ """Ritz, ..., Fugmann Proteomics 2016 [PMID 26992070]"""
+ # Although this publication seems to suggest that HEK293 are C*07:02
+ # (figure 3B), in a subsequent publication [PMID 28834231] this group
+ # gives the HEK293 HLA type as HLA‐A*03:01, HLA‐B*07:02, and HLA‐C*07:01.
+ # We are therefore using the HLA‐C*07:01 (i.e. the latter) typing results
+ # here.
allele_text = """
Cell line HLA-A 1 HLA-A 2 HLA-B 1 HLA-B 2 HLA-C 1 HLA-C 2
- HEK293 03:01 03:01 07:02 07:02 07:02 07:02
+ HEK293 03:01 03:01 07:02 07:02 07:01 07:01
HL-60 01:01 01:01 57:01 57:01 06:02 06:02
RPMI8226 30:01 68:02 15:03 15:10 02:10 03:04
MAVER-1 24:02 26:01 38:01 44:02 05:01 12:03
--
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