diff --git a/downloads-generation/data_curated/curate_ms_by_pmid.py b/downloads-generation/data_curated/curate_ms_by_pmid.py index 4c3ac8f82fff9a9ac7342b8b64981a801b5e630c..91c0db5d46229fb0c694ed81b09bb9d917f0d3c1 100755 --- a/downloads-generation/data_curated/curate_ms_by_pmid.py +++ b/downloads-generation/data_curated/curate_ms_by_pmid.py @@ -244,10 +244,15 @@ def handle_pmid_25576301(filename): def handle_pmid_26992070(*filenames): - """Ritz, ..., Fugmann Proteomics 2016 [PMID 26992070]""" # WRONG PMID!!! + """Ritz, ..., Fugmann Proteomics 2016 [PMID 26992070]""" + # Although this publication seems to suggest that HEK293 are C*07:02 + # (figure 3B), in a subsequent publication [PMID 28834231] this group + # gives the HEK293 HLA type as HLA‐A*03:01, HLA‐B*07:02, and HLA‐C*07:01. + # We are therefore using the HLA‐C*07:01 (i.e. the latter) typing results + # here. allele_text = """ Cell line HLA-A 1 HLA-A 2 HLA-B 1 HLA-B 2 HLA-C 1 HLA-C 2 - HEK293 03:01 03:01 07:02 07:02 07:02 07:02 + HEK293 03:01 03:01 07:02 07:02 07:01 07:01 HL-60 01:01 01:01 57:01 57:01 06:02 06:02 RPMI8226 30:01 68:02 15:03 15:10 02:10 03:04 MAVER-1 24:02 26:01 38:01 44:02 05:01 12:03