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Commit 5266d8df authored by Robert Fillinger's avatar Robert Fillinger
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Moved to Score Files

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compiled_data.csv deleted 100644 → 0
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filamentation_scores_sorted.csv deleted 100644 → 0
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invasion_scores_sorted.csv deleted 100644 → 0
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nc_adhesion_scores_sorted.csv deleted 100644 → 0
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May Strain, Species, Soll Clade, Isolation Site, MTL Genotype, Media, Temperature (°C), MJD Phenotype Score, MJD Score St. Dev., RJF Phenotype Score, RJF Score St. Dev., Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores
"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.40436","0.05654","0.32061","0.08573",0.36248,0.08383,0.370045797093798
"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.15948","0.05864","0.24497","0.06442",0.20222,0.07498,0.158534492998456
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.1274","0.01752","0.15739","0.04949",0.14239,0.04004,0.0795708007232509
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.31109","0.08324","0.24456","0.04805",0.27783,0.07567,0.258324644643588
"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.11858","0.02737","0.19708","0.02142",0.15783,0.04631,0.0999485277620135
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.26181","0.07878","0.15512","0.07884",0.20847,0.09517,0.166783249086038
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.08135","0.02328","0.24382","0.09556",0.16258,0.10694,0.106217582388576
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.3105","0.08328","0.23153","0.09308",0.27102,0.09674,0.249336800010558
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.16264","0.04631","0.1451","0.0605",0.15387,0.05458,0.0947221159049215
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.10856","0.03489","0.21571","0.08742",0.16213,0.08544,0.10562367195027
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.2575","0.07505","0.44473","0.31395",0.35111,0.24671,0.355039660019269
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.18884","0.07321","0.20839","0.05588",0.19862,0.06585,0.153783209492009
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.17602","0.07286","0.20442","0.08652",0.19022,0.08123,0.142696881310298
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.20169","0.07452","0.28724","0.09075",0.24446,0.0934,0.21428288614077
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.23349","0.02271","0.1584","0.01762",0.19594,0.04269,0.150246142881653
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.32406","0.03246","0.37088","0.123",0.34747,0.09295,0.350235584473861
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.07391","0.06126","0.09194","0.07791",0.0821,0.06991,0
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.15916","0.0304","0.26966","0.1231",0.21441,0.10532,0.174622866871676
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.2034","0.0736","0.15831","0.04921",0.18085,0.06654,0.130330346183795
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.25116","0.11163","0.14601","0.04573",0.19858,0.1002,0.153730417453048
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.80052","0.24837","0.87906","0.13587",0.83979,0.204,1
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.17586","0.12293","0.39536","0.06949",0.28561,0.14838,0.26859269622141
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.09402","0.01649","0.08434","0.03859",0.08918,0.03007,0.00934419089601287
"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.25164","0.11526","0.1191","0.06192",0.18537,0.1138,0.163377244386105
"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.22801","0.12081","0.12552","0.10411",0.17677,0.12387,0.153298016970606
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.32246","0.028","0.37487","0.05085",0.34866,0.0487,0.354753644929914
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.10527","0.00646","0.03499","0.00405",0.07013,0.03555,0.0283155970184239
"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.06624","0.0356","0.09794","0.07738",0.08209,0.06228,0.042332755145094
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.23132","0.05614","0.06809","0.02142",0.1497,0.09202,0.121571890675543
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.12591","0.02525","0.03691","0.02207",0.08141,0.05043,0.0415357929773569
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.64167","0.27566","0.43363","0.20496",0.53765,0.26423,0.576250527401434
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.10193","0.04626","0.05361","0.02397",0.07777,0.04405,0.0372697013735877
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.04006","0.02071","0.09068","0.04648",0.06537,0.04399,0.0227368618442642
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.15329","0.06512","0.15873","0.10503",0.15601,0.08742,0.128967230790868
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.13993","0.05973","0.07499","0.03658",0.10746,0.05922,0.0720664760208148
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.10765","0.05497","0.05846","0.0471",0.08306,0.05679,0.0434695982373072
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06247","0.02983","0.09085","0.04115",0.07666,0.03864,0.0359687778350757
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.16472","0.06514","0.08328","0.03977",0.124,0.0676,0.0914514087478318
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.14465","0.04937","0.05299","0.00119",0.09882,0.05762,0.0619403684778023
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.04013","0.03626","0.05182","0.04795",0.04597,0.04291,0
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.09","0.03182","0.0812","0.02335",0.0856,0.02825,0.0464464863344428
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.25647","0.21209","0.19529","0.2114",0.22588,0.21394,0.210855093525854
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.09922","0.02733","0.2285","0.20024",0.16386,0.15684,0.13816745581548
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.84961","0.19931","0.9488","0.0882",0.89921,0.1619,1
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.45062","0.23578","0.52365","0.17176",0.48713,0.20948,0.51704092635132
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.11826","0.07866","0.08255","0.02993",0.10041,0.06213,0.0638038535464816
"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.03713","0.03013","0.15927","0.0677",0.0982,0.08047,0.0690805864677548
"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.1376","0.10131","0.07287","0.01717",0.10524,0.07954,0.0797106920138312
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.2137","0.09117","0.11156","0.02141",0.16263,0.08362,0.166367191628792
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.04399","0.02055","0.13808","0.04951",0.09103,0.06041,0.0582541863590379
"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.06118","0.0323","0.04371","0.0123",0.05245,0.02595,0
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.07587","0.05797","0.11829","0.06029",0.09708,0.06283,0.0673894333126972
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.10218","0.07352","0.0792","0.05128",0.09069,0.06442,0.057740800579824
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.10666","0.05126","0.21475","0.14279",0.1607,0.12012,0.163452972352666
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.23123","0.12379","0.18296","0.07651",0.2071,0.10569,0.233515031633624
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09138","0.07086","0.09668","0.03768",0.09403,0.05681,0.0627840608815136
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.31698","0.29241","0.08156","0.0525",0.19927,0.2408,0.221692059129962
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.20847","0.0641","0.02556","0.00252",0.11701,0.10209,0.0974828997236777
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.15561","0.12283","0.19498","0.13731",0.1753,0.13175,0.185498361695381
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.20962","0.07886","0.18925","0.05945",0.19944,0.07057,0.221948752019569
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.03226","0.01597","0.12031","0.02159",0.07629,0.04794,0.0359974028719404
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.06731","0.05024","0.13541","0.05233",0.10136,0.06157,0.073852054298096
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.76981","0.26568","0.43608","0.28171",0.58777,0.32092,0.808310809790569
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.24403","0.12318","0.07548","0.0362",0.15975,0.12387,0.162018512087215
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.09296","0.05803","0.23065","0.16411",0.16181,0.14103,0.165129025925982
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.09186","0.08274","0.07591","0.02051",0.08316,0.05835,0.0463708155284099
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.51867","0.36484","0.42939","0.20735",0.47403,0.30007,0.636568167061772
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.90286","0.07192","0.52658","0.05493",0.71472,0.19872,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.07615","0.02668","0.10551","0.01848",0.09083,0.02724,0.0579521947242061
"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.16356","0.08142","0.17102","0.04669",0.16729,0.06647,0.177445193004016
"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.14409","0.07049","0.06683","0.05303",0.10546,0.07337,0.109603019596656
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.11518","0.02917","0.02711","0.0122",0.07115,0.04939,0.0719568127455068
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.13688","0.03178","0.0628","0.01808",0.09984,0.04517,0.10343654677522
"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.00753","0.0075","0.00427","0.0029",0.00557,0.00548,0
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.16561","0.08857","0.08871","0.06018",0.12716,0.08492,0.133413065900064
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.00339","0.00277","0.02131","0.00775",0.01414,0.01078,0.00940332243411091
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.03031","0.01226","0.06998","0.04102",0.05014,0.03619,0.0489038600803178
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.08762","0.05006","0.06852","0.02908",0.07807,0.04203,0.0795496938708332
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.1018","0.10917","0.10321","0.05984",0.1025,0.08804,0.106355197612412
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.06999","0.10789","0.00236","0.0023",0.03617,0.08346,0.0335754569992758
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.33427","0.343","0.31403","0.21948",0.32415,0.28812,0.349557813425794
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.11189","0.08451","0.13228","0.05773",0.12209,0.07309,0.12785007351489
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.16396","0.09244","0.10888","0.07948",0.13642,0.0905,0.143573481972394
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.06425","0.01249","0.05389","0.05717",0.05907,0.0417,0.0587021878908907
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.02649","0.01886","0.07213","0.03876",0.05388,0.03929,0.0530075270468959
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.18256","0.12145","0.13611","0.13072",0.15934,0.12829,0.168722157607145
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.06098","0.02017","0.12882","0.12385",0.0949,0.09499,0.0980161952204349
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.08774","0.11834","0.11535","0.0612",0.10154,0.09521,0.105301849941846
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.50462","0.36976","0.25544","0.19731",0.38003,0.32148,0.410871425749961
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.4998","0.11333","0.22974","0.12861",0.36477,0.18145,0.394127586736597
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"1.0","0.0","0.8339","0.1185",0.91695,0.11797,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.17179","0.02492","0.13819","0.07767",0.15499,0.06008,0.163949175974895
"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.39405","0.04549","0.56385","0.08526",0.47895,0.10898,0.0281911738154806
"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.46491","0.11488","0.48053","0.09357",0.47272,0.10506,0.0121224626653942
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.61432","0.0298","0.66708","0.08144",0.6407,0.06675,0.445384436821336
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.50564","0.08554","0.62897","0.09409",0.56731,0.10903,0.256093471924892
"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.59612","0.10421","0.55963","0.10643",0.57788,0.10689,0.283356116685151
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.65115","0.19124","0.54811","0.15243",0.59963,0.18044,0.339454747104795
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.70757","0.21187","0.88699","0.11268",0.79728,0.19194,0.849242990895257
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.79183","0.22266","0.68098","0.15271",0.73641,0.1988,0.692244203141523
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.55325","0.13944","0.55712","0.12697",0.55519,0.13336,0.224832993732429
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.52573","0.08604","0.49517","0.10916",0.51045,0.09946,0.109437466147378
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.6314","0.11966","0.58915","0.17981",0.61028,0.15418,0.366923731655103
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.47863","0.04573","0.5838","0.02883",0.53121,0.06501,0.162982641665162
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.47489","0.13595","0.50155","0.0844",0.48822,0.11393,0.052100796987439
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.48031","0.11021","0.56073","0.10101",0.52052,0.1131,0.135410487219829
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.51937","0.13251","0.72099","0.07673",0.62018,0.14794,0.392458280673699
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.24004","0.05309","0.696","0.15599",0.46802,0.25603,0
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.48709","0.06416","0.50157","0.10367",0.49499,0.08823,0.069562301720358
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.51096","0.05616","0.45124","0.12315",0.4811,0.10026,0.0337365556730547
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.56296","0.15388","0.56255","0.10673",0.56276,0.13242,0.244357896365841
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.54269","0.17894","0.61894","0.10128",0.58081,0.15031,0.290913311495706
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.77746","0.16655","0.93399","0.10599",0.85573,0.16004,1
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.41339","0.02825","0.64693","0.03716",0.50681,0.11883,0.100049005700137
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.65838","0.12181","0.7831","0.1131",0.72074,0.13305,0.651827396765624
"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.36551","0.10623","0.5587","0.02997",0.48142,0.11837,0.189534327489029
"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.43244","0.03875","0.60468","0.09646",0.51856,0.11322,0.266778977142738
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.78417","0.17975","0.65753","0.12574",0.72085,0.16754,0.687506499448847
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.46326","0.07061","0.51721","0.08596",0.49024,0.08315,0.207878371914062
"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.50838","0.06669","0.63416","0.10398",0.57127,0.10763,0.376406480730434
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.50186","0.17053","0.63349","0.14099",0.57366,0.16839,0.381377259208419
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.51884","0.04168","0.50801","0.02032",0.51342,0.03323,0.256088683679624
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.4938","0.12506","0.52802","0.15591",0.51091,0.14236,0.250868326365924
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.40261","0.11039","0.40341","0.07045",0.40301,0.0926,0.0264553565857614
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.44092","0.08319","0.47094","0.03778",0.45593,0.06632,0.136519623135958
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.47157","0.135","0.52886","0.18005",0.50022,0.16169,0.228635011751003
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.54455","0.22942","0.51176","0.10306",0.52816,0.1786,0.286745283999917
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.44623","0.12472","0.51861","0.18453",0.48242,0.1616,0.191614151119985
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.52239","0.13155","0.45116","0.07877",0.48678,0.11412,0.200682182150954
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.3455","0.07704","0.48618","0.11849",0.41584,0.12221,0.0531394937709282
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.29302","0.04316","0.48757","0.16887",0.39029,0.15701,0
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.45448","0.11775","0.45207","0.06482",0.45328,0.09506,0.131008090513924
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.37452","0.08104","0.543","0.1719",0.45876,0.1586,0.142405524011564
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.47471","0.09132","0.63763","0.15857",0.55617,0.1529,0.345001143902997
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.51085","0.12898","0.46492","0.20497",0.48788,0.17278,0.202969988145005
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.82542","0.1505","0.90916","0.09297",0.8711,0.12942,1
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.23814","0.19592","0.73597","0.13796",0.48706,0.30111,0.201264532767621
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.72552","0.15428","0.60079","0.06865",0.66316,0.13471,0.56752147417899
nc_biofilm_scores_sorted.csv deleted 100644 → 0
+ 0
− 139
View file @ 0b113eda
May Strain, Species, Soll Clade, Isolation Site, Media, Temperature (°C), Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores
"12C","Candida albicans","I","Oral cavity","LEE",30,0.095333333,0.020572365,0.313043477483122
"19F","Candida albicans","I","Vagina","LEE",30,0.116333333,0.03058322,0.469565216224683
"529L","Candida albicans","529L","Oral cavity","LEE",30,0.172138889,0.029546325,0.885507247489423
"GC75","Candida albicans","SA","Oral cavity","LEE",30,0.142,0.022211108,0.660869566059951
"L26","Candida albicans","I","Vagina","LEE",30,0.092666667,0.021644219,0.293167706103931
"P34048","Candida albicans","III","Bloodstream","LEE",30,0.1875,0.013313527,1
"P37005","Candida albicans","I","Oral cavity","LEE",30,0.094333333,0.013421583,0.305590061352571
"P37037","Candida albicans","I","Oral cavity","LEE",30,0.102166667,0.004633813,0.363975159344161
"P37039","Candida albicans","I","Bloodstream","LEE",30,0.08,0.014302292,0.198757765965819
"P57055","Candida albicans","III","Bloodstream","LEE",30,0.122666667,0.01060922,0.516770190020447
"P57072","Candida albicans","II","Bloodstream","LEE",30,0.142833333,0.03977611,0.667080743684271
"P60002","Candida albicans","SA","Bloodstream","LEE",30,0.130333333,0.023534844,0.57391304205239
"P75010","Candida albicans","E","Bloodstream","LEE",30,0.100833333,0.028121265,0.35403726620115
"P75016","Candida albicans","SA","Bloodstream","LEE",30,0.134166667,0.013973189,0.602484475521778
"P75063","Candida albicans","SA","Bloodstream","LEE",30,0.097833333,0.028726681,0.331677017809498
"P76055","Candida albicans","II","Bloodstream","LEE",30,0.099166667,0.022549329,0.34161491095251
"P76067","Candida albicans","II","Bloodstream","LEE",30,0.0745,0.026060293,0.157763977247791
"P78042","Candida albicans","III","Bloodstream","LEE",30,0.1085,0.025751483,0.411180125686509
"P78048","Candida albicans","I","Bloodstream","LEE",30,0.130666667,0.009546669,0.576397519064851
"P87","Candida albicans","SA","Oral cavity","LEE",30,0.1075,0.013503086,0.403726709555958
"P94015","Candida albicans","I","Bloodstream","LEE",30,0.053333333,0.006497863,0
"SC5314","Candida albicans","I","Bloodstream","LEE",30,0.136166667,0.015614274,0.617391307782879
"WO-1","Candida albicans","WO-1","Bloodstream","LEE",30,0.085166667,0.022086321,0.237267085124802
"12C","Candida albicans","I","Oral cavity","LEE",37,0.070166667,0.007717225,0.3673647486911
"19F","Candida albicans","I","Vagina","LEE",37,0.0315,0.035251478,0.164921465968586
"529L","Candida albicans","529L","Oral cavity","LEE",37,0.029566667,0.004127953,0.154799303664921
"GC75","Candida albicans","SA","Oral cavity","LEE",37,0.036,0.019735051,0.18848167539267
"L26","Candida albicans","I","Vagina","LEE",37,0.0385,0.010011105,0.201570680628272
"P34048","Candida albicans","III","Bloodstream","LEE",37,0.067833333,0.009994443,0.355148340314136
"P37005","Candida albicans","I","Oral cavity","LEE",37,0.043,0.009788031,0.225130890052356
"P37037","Candida albicans","I","Oral cavity","LEE",37,0.116166667,0.089786166,0.608202445026178
"P37039","Candida albicans","I","Bloodstream","LEE",37,0.032666667,0.007371115,0.171029670157068
"P57055","Candida albicans","III","Bloodstream","LEE",37,0.0255,0.008205689,0.133507853403141
"P57072","Candida albicans","II","Bloodstream","LEE",37,0.093166667,0.01338739,0.487783596858639
"P60002","Candida albicans","SA","Bloodstream","LEE",37,0.093,0.056799844,0.486910994764398
"P75010","Candida albicans","E","Bloodstream","LEE",37,0.0405,0.009616248,0.212041884816754
"P75016","Candida albicans","SA","Bloodstream","LEE",37,0.054166667,0.025584826,0.283595115183246
"P75063","Candida albicans","SA","Bloodstream","LEE",37,0.031333333,0.010563301,0.164048863874346
"P76055","Candida albicans","II","Bloodstream","LEE",37,0.087833333,0.047346242,0.459860382198953
"P76067","Candida albicans","II","Bloodstream","LEE",37,0,0.015227898,0
"P78042","Candida albicans","III","Bloodstream","LEE",37,0.066833333,0.017062793,0.349912738219895
"P78048","Candida albicans","I","Bloodstream","LEE",37,0.038666667,0.007289643,0.202443282722513
"P87","Candida albicans","SA","Oral cavity","LEE",37,0.033666667,0.007559027,0.176265272251309
"P94015","Candida albicans","I","Bloodstream","LEE",37,0.069666667,0.007243771,0.364746947643979
"SC5314","Candida albicans","I","Bloodstream","LEE",37,0.191,0.035179303,1
"WO-1","Candida albicans","WO-1","Bloodstream","LEE",37,0.027,0.012212243,0.141361256544503
"12C","Candida albicans","I","Oral cavity","SPI",30,0.201,0.017663522,0.666471278624234
"19F","Candida albicans","I","Vagina","SPI",30,0.288833333,0.108809849,0.975381008177469
"529L","Candida albicans","529L","Oral cavity","SPI",30,0.228333333,0.020055479,0.762602578854165
"GC75","Candida albicans","SA","Oral cavity","SPI",30,0.191666667,0.02208066,0.633645957366525
"L26","Candida albicans","I","Vagina","SPI",30,0.240166667,0.011728408,0.804220400708348
"P34048","Candida albicans","III","Bloodstream","SPI",30,0.2645,0.018282505,0.889800704442908
"P37005","Candida albicans","I","Oral cavity","SPI",30,0.271833333,0.012432037,0.915592028037036
"P37037","Candida albicans","I","Oral cavity","SPI",30,0.193,0.018015425,0.638335287969912
"P37039","Candida albicans","I","Bloodstream","SPI",30,0.233166667,0.018697148,0.779601408885816
"P57055","Candida albicans","III","Bloodstream","SPI",30,0.243166667,0.011710631,0.814771397203718
"P57072","Candida albicans","II","Bloodstream","SPI",30,0.224166667,0.099432417,0.747948419399705
"P60002","Candida albicans","SA","Bloodstream","SPI",30,0.200666667,0.012569805,0.665298946852637
"P75010","Candida albicans","E","Bloodstream","SPI",30,0.251,0.129727492,0.842321220213741
"P75016","Candida albicans","SA","Bloodstream","SPI",30,0.187333333,0.014161764,0.618405626750769
"P75063","Candida albicans","SA","Bloodstream","SPI",30,0.2305,0.118026833,0.770222744162043
"P76055","Candida albicans","II","Bloodstream","SPI",30,0.185166667,0.023723523,0.610785464959889
"P76067","Candida albicans","II","Bloodstream","SPI",30,0.229,0.090368997,0.764947245914358
"P78042","Candida albicans","III","Bloodstream","SPI",30,0.263666667,0.015362291,0.886869873255416
"P78048","Candida albicans","I","Bloodstream","SPI",30,0.227,0.010657548,0.757913248250778
"P87","Candida albicans","SA","Oral cavity","SPI",30,0.198333333,0.018568941,0.65709261390046
"P94015","Candida albicans","I","Bloodstream","SPI",30,0.0115,0.003947573,0
"SC5314","Candida albicans","I","Bloodstream","SPI",30,0.295833333,0.01332604,1
"WO-1","Candida albicans","WO-1","Bloodstream","SPI",30,0.182333333,0.038016078,0.600820632591818
"12C","Candida albicans","I","Oral cavity","SPI",37,0.091333333,0.009358597,0.166666665829146
"19F","Candida albicans","I","Vagina","SPI",37,0.158166667,0.156771242,0.33458961557789
"529L","Candida albicans","529L","Oral cavity","SPI",37,0.047,0.017198999,0.0552763819095477
"GC75","Candida albicans","SA","Oral cavity","SPI",37,0.1405,0.044180187,0.290201005025126
"L26","Candida albicans","I","Vagina","SPI",37,0.189666667,0.084082136,0.413735344221106
"P34048","Candida albicans","III","Bloodstream","SPI",37,0.099666667,0.012829004,0.187604690954774
"P37005","Candida albicans","I","Oral cavity","SPI",37,0.140166667,0.016079663,0.289363484924623
"P37037","Candida albicans","I","Oral cavity","SPI",37,0.025,0.028732966,0
"P37039","Candida albicans","I","Bloodstream","SPI",37,0.081333333,0.017240134,0.141541037688442
"P57055","Candida albicans","III","Bloodstream","SPI",37,0.2765,0.062311048,0.631909547738694
"P57072","Candida albicans","II","Bloodstream","SPI",37,0.149166667,0.081202764,0.311976550251256
"P60002","Candida albicans","SA","Bloodstream","SPI",37,0.262,0.128355842,0.595477386934673
"P75010","Candida albicans","E","Bloodstream","SPI",37,0.309833333,0.112417995,0.715661640703518
"P75016","Candida albicans","SA","Bloodstream","SPI",37,0.1315,0.052787046,0.267587939698493
"P75063","Candida albicans","SA","Bloodstream","SPI",37,0.127333333,0.049466319,0.257118927135678
"P76055","Candida albicans","II","Bloodstream","SPI",37,0.1255,0.041322579,0.25251256281407
"P76067","Candida albicans","II","Bloodstream","SPI",37,0.252666667,0.080844329,0.572026801507538
"P78042","Candida albicans","III","Bloodstream","SPI",37,0.265666667,0.060271607,0.604690118090452
"P78048","Candida albicans","I","Bloodstream","SPI",37,0.0675,0.009706813,0.10678391959799
"P87","Candida albicans","SA","Oral cavity","SPI",37,0.423,0.023212185,1
"P94015","Candida albicans","I","Bloodstream","SPI",37,0.033833333,0.008698659,0.0221943040201005
"SC5314","Candida albicans","I","Bloodstream","SPI",37,0.2955,0.018147543,0.67964824120603
"WO-1","Candida albicans","WO-1","Bloodstream","SPI",37,0.080833333,0.038594761,0.140284756281407
"12C","Candida albicans","I","Oral cavity","YPD",30,0.687833333,0.051020965,0.64463579208251
"19F","Candida albicans","I","Vagina","YPD",30,0.552333333,0.026159766,0.455434023230565
"529L","Candida albicans","529L","Oral cavity","YPD",30,0.525833333,0.121769477,0.41843146327059
"GC75","Candida albicans","SA","Oral cavity","YPD",30,0.382666667,0.021959559,0.218524552216453
"L26","Candida albicans","I","Vagina","YPD",30,0.578,0.052860666,0.491272981141515
"P34048","Candida albicans","III","Bloodstream","YPD",30,0.4895,0.046867722,0.367698394105374
"P37005","Candida albicans","I","Oral cavity","YPD",30,0.825666667,0.018649546,0.837095648905837
"P37037","Candida albicans","I","Oral cavity","YPD",30,0.525666667,0.050334437,0.418198743698579
"P37039","Candida albicans","I","Bloodstream","YPD",30,0.761166667,0.03512715,0.747032814286277
"P57055","Candida albicans","III","Bloodstream","YPD",30,0.384833333,0.014314911,0.221549917823179
"P57072","Candida albicans","II","Bloodstream","YPD",30,0.522666667,0.051629019,0.414009774646507
"P60002","Candida albicans","SA","Bloodstream","YPD",30,0.312,0.133677057,0.119851058524413
"P75010","Candida albicans","E","Bloodstream","YPD",30,0.549,0.043755635,0.450779613638147
"P75016","Candida albicans","SA","Bloodstream","YPD",30,0.3835,0.076235199,0.219688154265477
"P75063","Candida albicans","SA","Bloodstream","YPD",30,0.481333333,0.018397615,0.35629508899818
"P76055","Candida albicans","II","Bloodstream","YPD",30,0.585333333,0.059951833,0.501512682803363
"P76067","Candida albicans","II","Bloodstream","YPD",30,0.547666667,0.272198253,0.448917850080445
"P78042","Candida albicans","III","Bloodstream","YPD",30,0.616333333,0.050002222,0.544798696341446
"P78048","Candida albicans","I","Bloodstream","YPD",30,0.7795,0.022375582,0.772632069139057
"P87","Candida albicans","SA","Oral cavity","YPD",30,0.555833333,0.046129046,0.460321153791316
"P94015","Candida albicans","I","Bloodstream","YPD",30,0.226166667,0.022637849,0
"SC5314","Candida albicans","I","Bloodstream","YPD",30,0.942333333,0.112602546,1
"WO-1","Candida albicans","WO-1","Bloodstream","YPD",30,0.3555,0.085379057,0.180591109779466
"12C","Candida albicans","I","Oral cavity","YPD",37,0.311,0.041115353,0.235687168109339
"19F","Candida albicans","I","Vagina","YPD",37,0.527,0.176534935,0.432498102050114
"529L","Candida albicans","529L","Oral cavity","YPD",37,0.222833333,0.025597309,0.155353075170843
"GC75","Candida albicans","SA","Oral cavity","YPD",37,0.739,0.154473748,0.625664389066059
"L26","Candida albicans","I","Vagina","YPD",37,0.200166667,0.004818944,0.134700076537585
"P34048","Candida albicans","III","Bloodstream","YPD",37,0.186833333,0.046366894,0.12255125284738
"P37005","Candida albicans","I","Oral cavity","YPD",37,0.476833333,0.064052062,0.386788154897494
"P37037","Candida albicans","I","Oral cavity","YPD",37,0.092833333,0.039630235,0.0369020501138952
"P37039","Candida albicans","I","Bloodstream","YPD",37,0.556833333,0.214545579,0.459681093394078
"P57055","Candida albicans","III","Bloodstream","YPD",37,0.442,0.199082688,0.355049354897494
"P57072","Candida albicans","II","Bloodstream","YPD",37,0.999,0.15214622,0.862566439179955
"P60002","Candida albicans","SA","Bloodstream","YPD",37,0.834,0.229289967,0.712224753530752
"P75010","Candida albicans","E","Bloodstream","YPD",37,0.148666667,0.063838337,0.08777524738041
"P75016","Candida albicans","SA","Bloodstream","YPD",37,0.055333333,0.025249862,0.00273348519362186
"P75063","Candida albicans","SA","Bloodstream","YPD",37,0.230666667,0.085450603,0.162490509339408
"P76055","Candida albicans","II","Bloodstream","YPD",37,1.149833333,0.061313403,1
"P76067","Candida albicans","II","Bloodstream","YPD",37,0.515833333,0.261253176,0.422323462414579
"P78042","Candida albicans","III","Bloodstream","YPD",37,0.330333333,0.219723817,0.253302961275626
"P78048","Candida albicans","I","Bloodstream","YPD",37,0.285666667,0.064599837,0.212604404555809
"P87","Candida albicans","SA","Oral cavity","YPD",37,0.125333333,0.067227846,0.0665148063781321
"P94015","Candida albicans","I","Bloodstream","YPD",37,0.052333333,0.007932003,0
"SC5314","Candida albicans","I","Bloodstream","YPD",37,1.090166667,0.034047353,0.945634017312073
"WO-1","Candida albicans","WO-1","Bloodstream","YPD",37,0.178166667,0.123078566,0.114654518451025
nc_filamentation_scores_sorted.csv deleted 100644 → 0
+ 0
− 139
View file @ 0b113eda
May Strain, Species, Soll Clade, Isolation Site, MTL Genotype, Media, Temperature (°C), MJD Phenotype Score, MJD Score St. Dev., RJF Phenotype Score, RJF Score St. Dev., Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores
"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.04099","0.04034",-0.08852,0.00525,-0.06476,0.03731,0.836297385839406
"19F","Candida albicans","I","Vagina","α/α","LEE",30,"-0.03515","0.0075",-0.06619,0.06579,-0.05067,0.04932,0.883399077355085
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"-0.02499","0.05624",-0.06038,0.05067,-0.04269,0.05638,0.910075549909741
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"-0.1212","0.04089",-0.50867,0.11858,-0.31493,0.21307,0
"L26","Candida albicans","I","Vagina","a/a","LEE",30,"-0.04675","0.03686",-0.41031,0.36015,-0.22853,0.31397,0.288827973524102
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.13806","0.25482",-0.19441,0.21593,-0.16624,0.23785,0.497058233602995
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.27506","0.35284",-0.05103,0.08298,-0.16304,0.27971,0.50775556595574
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"-0.01747","0.02972",-0.0878,0.02925,-0.05264,0.04589,0.876813532125426
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.0126","0.05173",-0.19819,0.31891,-0.1054,0.24658,0.700441264959551
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.04046","0.05759",-0.31142,0.36746,-0.17594,0.29585,0.464631944908738
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"-0.23778","0.20026",-0.02885,0.06863,-0.13332,0.18254,0.607107040181855
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"-0.09777","0.05773",-0.08857,0.0586,-0.09317,0.05835,0.741325132045196
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"-0.1085","0.05142",-0.1093,0.04122,-0.1089,0.0466,0.688741057698736
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"-0.1514","0.10162",-0.12686,0.0782,-0.13913,0.0915,0.587684696128903
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"-0.00565","0.04619",-0.03542,0.08033,-0.02053,0.06719,0.984154576452497
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.01368","0.06578",-0.01791,0.05565,-0.01579,0.06096,1
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.08998","0.07848",-0.06208,0.08878,-0.0773,0.08447,0.794377214682089
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.02409","0.06358",-0.06982,0.01683,-0.04696,0.05182,0.895801297051548
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"-0.04377","0.05186",-0.19432,0.22102,-0.11905,0.1773,0.654810456642375
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"-0.18624","0.26727",-0.10737,0.1309,-0.14681,0.2141,0.562011098482316
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"-0.19419","0.28298",-0.19917,0.27956,-0.19668,0.28129,0.395299859597513
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.01106","0.08714",-0.09,0.01917,-0.05053,0.07442,0.883867085645517
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"-0.03575","0.06478",-0.26474,0.38331,-0.15025,0.29778,0.550511466203116
"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.27621","0.27175",-0.51195,0.25542,-0.39408,0.28885,0.234671065483038
"19F","Candida albicans","I","Vagina","α/α","LEE",37,"-0.08923","0.03871",-0.27054,0.18985,-0.17988,0.16428,0.699585440496603
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"-0.172","0.03372",-0.05364,0.05817,-0.11282,0.07591,0.845137065092353
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"-0.10733","0.12608",-0.32594,0.13508,-0.21664,0.17035,0.619799014607254
"L26","Candida albicans","I","Vagina","a/a","LEE",37,"-0.18102","0.15419",-0.82338,0.02109,-0.5022,0.33951,0
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.07721","0.06021",-0.56364,0.23517,-0.32043,0.29769,0.394526078180279
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.05025","0.07355",-0.03269,0.04913,-0.04147,0.06316,1
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"-0.1874","0.20732",-0.02009,0.05022,-0.10374,0.17248,0.864844920018232
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.06909","0.06682",-0.17973,0.24474,-0.12441,0.18773,0.819981333970004
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.09342","0.13074",-0.08379,0.04193,-0.08861,0.09721,0.897684109999349
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"-0.25818","0.29755",-0.377,0.26048,-0.31759,0.28587,0.400690209016127
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"-0.10764","0.08043",-0.09909,0.04194,-0.10337,0.06428,0.865647993401775
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"-0.09211","0.0736",-0.15669,0.08917,-0.1244,0.0879,0.820003038656046
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"-0.06784","0.073",-0.07824,0.03059,-0.07304,0.05621,0.931478306166301
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"-0.51613","0.27766",-0.01219,0.00601,-0.26416,0.31946,0.516658346537017
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.128","0.02438",-0.25605,0.13317,-0.19203,0.11517,0.673214246955918
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.06589","0.06482",-0.14899,0.09736,-0.10744,0.09255,0.856814186182797
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.08498","0.02669",-0.1091,0.02424,-0.09704,0.0282,0.879387059666182
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"-0.2315","0.11715",-0.17935,0.13163,-0.20542,0.1273,0.64415167234606
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"-0.24112","0.19811",-0.1087,0.06223,-0.17491,0.16107,0.710372669459336
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"-0.27706","0.28252",-0.0714,0.05421,-0.17423,0.22793,0.711848588110173
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.11099","0.06829",-0.08615,0.00656,-0.09857,0.05007,0.876066242701799
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"-0.38543","0.26521",-0.34904,0.30265,-0.36724,0.28513,0.292926442819005
"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.2469","0.01296",0.39794,0.17955,0.32242,0.14801,0.0865159461569008
"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.32672","0.0526",0.2889,0.00079,0.30781,0.04173,0.0765127966368603
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.76397","0.3195",0.35123,0.14109,0.5576,0.32184,0.247538581620497
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.28803","0.12367",0.28736,0.02878,0.2877,0.08979,0.0627439166335739
"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.1824","0.03441",0.28318,0.05332,0.23279,0.06747,0.0251482328453859
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34379","0.15011",0.24816,0.06084,0.29598,0.12411,0.0684130527065332
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.22349","0.06303",0.19419,0.03096,0.20884,0.05177,0.00875018828652415
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.42458","0.16919",0.20811,0.03882,0.31635,0.16365,0.0823599490599367
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.17708","0.03416",0.25065,0.05002,0.21387,0.05646,0.01219411998302
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34398","0.28243",0.23475,0.03919,0.28936,0.20889,0.0638804825612445
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.27147","0.09582",0.18553,0.05762,0.2285,0.08998,0.0222109630684541
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.28738","0.09165",0.41674,0.36199,0.35206,0.27185,0.106809810070248
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.30983","0.13422",0.37159,0.34613,0.34071,0.26432,0.0990387117093678
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.27907","0.12028",0.28337,0.1203,0.28122,0.12031,0.0583072014460405
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.23418","0.04655",0.24566,0.07532,0.23992,0.06287,0.030029988908212
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.27443","0.13986",0.16728,0.03279,0.22086,0.11484,0.0169800210880907
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"1.96451","1.08699",1.40001,0.48797,1.6566,0.86369,1
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.48766","0.13675",0.38665,0.0365,0.43716,0.1121,0.165075930820108
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.22606","0.10838",0.29909,0.08999,0.26257,0.10609,0.0455379517164884
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.1748","0.01382",0.20668,0.05681,0.19606,0.04941,0
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.94036","0.56363",1.02914,0.41858,0.98475,0.49841,0.539998904514769
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.5454","0.12933",0.47513,0.15885,0.51027,0.14905,0.215132759116491
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"1.36474","0.92771",0.43757,0.2214,0.90116,0.81838,0.482766647952127
"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.36402","0.11843",0.46793,0.3715,0.42637,0.30168,0.235425285744338
"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.36736","0.15235",0.3179,0.00507,0.34263,0.11059,0.117986115980646
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.441","0.16246",0.62106,0.24005,0.53103,0.22386,0.382203211555992
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.22402","0.02924",0.35762,0.06411,0.29082,0.08333,0.0453264146974266
"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.14651","0.01592",0.47404,0.16117,0.34302,0.20355,0.118533062197602
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.40667","0.19144",0.33579,0.15025,0.37123,0.17569,0.158095505224038
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.37134","0.084",0.21147,0.05498,0.27542,0.10378,0.0237290512586775
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.57556","0.08937",0.47688,0.29484,0.52622,0.22336,0.375457541546876
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.22933","0.06008",0.28768,0.06033,0.2585,0.06691,0
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.37073","0.21586",0.30106,0.08404,0.3359,0.16746,0.108547787672674
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.28902","0.08601",0.47858,0.20827,0.37518,0.18072,0.163635088703457
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.38247","0.11911",0.33901,0.11068,0.36074,0.11701,0.143384054414136
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.2752","0.04497",0.33501,0.10986,0.3051,0.08911,0.0653530607951756
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.37552","0.15942",0.36015,0.1474,0.36784,0.15372,0.153341280415118
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.25639","0.0595",0.32908,0.09455,0.29274,0.08695,0.0480190729962836
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.47839","0.23091",0.24837,0.08096,0.36338,0.20776,0.147086459575065
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.48725","0.12839",0.37463,0.0877,0.43094,0.12353,0.241834373466096
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.36157","0.11721",0.31645,0.0139,0.33901,0.08645,0.112909333146343
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.28549","0.07521",0.24891,0.06627,0.2672,0.0732,0.0122011079166959
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.78745","0.32976",0.78296,0.27819,0.78521,0.30508,0.738671902391137
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.41015","0.29012",0.44398,0.20491,0.42707,0.25173,0.236406984082463
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.67101","0.2304",0.50393,0.16271,0.58747,0.21624,0.46135614613281
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"1.22802","0.23879",0.71508,0.44828,0.97155,0.44132,1
"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.24524","0.14067",0.21748,0.09501,0.23136,0.12083,0.574409139104559
"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.25653","0.15647",0.21744,0.10667,0.23699,0.13532,0.593665560762048
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.10265","0.05696",0.13797,0.02159,0.12031,0.04655,0.194582207476827
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.143","0.06843",0.02702,0.03582,0.08501,0.07966,0.0738447857167288
"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.22953","0.02028",0.1358,0.08309,0.18267,0.07651,0.407873584841126
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.0484","0.052",0.07903,0.0754,0.06372,0.06655,0.00102609706878269
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.08293","0.07678",0.05511,0.03795,0.06902,0.06214,0.0191538119506105
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.18345","0.18786",0.17751,0.13348,0.18048,0.16298,0.400383076239012
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.15024","0.12527",0.093,0.10566,0.12162,0.11937,0.199062831343845
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.11791","0.01678",0.07271,0.04972,0.09531,0.04345,0.109074118411602
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.1332","0.08506",0.06669,0.09986,0.09995,0.09854,0.124944419742108
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.08737","0.11095",0.03946,0.09158,0.06342,0.10451,0
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.12261","0.07198",0.18336,0.03999,0.15298,0.06567,0.306324178267264
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.10861","0.11907",0.12807,0.13663,0.11834,0.12852,0.187844170058487
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.0826","0.09144",0.04716,0.02888,0.06488,0.07008,0.00499367240140914
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.18004","0.16851",0.25785,0.09205,0.21895,0.14124,0.531962923692581
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46645","0.09227",0.26357,0.13443,0.35579,0.1547,1
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.16136","0.18463",0.20492,0.08911,0.18314,0.14659,0.409481136915552
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.06269","0.04443",0.06479,0.08043,0.06374,0.06498,0.00109450354003489
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.0996","0.09517",0.1064,0.11316,0.103,0.10461,0.135376406608065
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.14206","0.11834",0.074,0.20584,0.10803,0.1713,0.152580634127988
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.28722","0.09674",0.18579,0.15501,0.23651,0.1388,0.592023805451996
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.15643","0.00544",0.11431,0.09245,0.13537,0.06879,0.246092280329719
"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.14053","0.01972",0.15817,0.03985,0.15111,0.0344,0.591392020815265
"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.07693","0.05958",0.01134,0.07934,0.04413,0.07745,0.359431916738942
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.07727","0.04461",0.19281,0.05065,0.13504,0.07494,0.55654813529922
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.12178","0.04529",0.05406,0.0492,0.08792,0.05816,0.454379878577624
"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.4013","0.31601",0.09973,0.04673,0.30077,0.29583,0.915893321769297
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.24187","0.38409",0.13585,0.14936,0.19643,0.31083,0.689657415437988
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.40995","0.30997",0.1583,0.13341,0.32607,0.28993,0.970750216825672
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.02876","0.06888",0.15137,0.05448,0.09882,0.08609,0.478013876843018
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.08914","0.14993",0.07312,0.10835,0.08113,0.13105,0.439657415437988
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.04478","0.0718",0.01312,0.17319,0.02895,0.13351,0.326517779705117
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.1785","0.28389",0.06796,0.07799,0.13113,0.22728,0.54807025151778
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.02769","0.04956",0.07541,0.06554,0.05155,0.06281,0.375520381613183
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.09349","0.07765",0.10463,0.08116,0.09906,0.07962,0.478534258456201
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.06838","0.07971",0.05395,0.04039,0.06117,0.0636,0.396379011274935
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.43639","0.31586",0.14589,0.11791,0.33956,0.29983,1
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.12133","0.08353",0.25196,0.12111,0.18664,0.12284,0.668430182133565
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.13529","0.06662",0.12782,0.12149,0.13155,0.09805,0.54898091934085
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.15053","0.10597",0.11878,0.19145,0.13465,0.15554,0.555702515177797
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.25629","0.21899",0.14078,0.0667,0.21008,0.18373,0.719254119687771
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.28004","0.29705",0.07121,0.22865,0.19651,0.29038,0.689830875975716
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.0572","0.04868",-0.08802,0.11699,-0.01541,0.11532,0.230333911535126
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"-0.23334","0.14927",-0.00995,0.08179,-0.12164,0.1642,0
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.09713","0.0234",0.1322,0.09448,0.11466,0.07102,0.512359063313096
nc_invasion_scores_sorted.csv deleted 100644 → 0
+ 0
− 139
View file @ 0b113eda
May Strain, Species, Soll Clade, Isolation Site, MTL Genotype, Media, Temperature (°C), MJD Phenotype Score, MJD Score St. Dev., RJF Phenotype Score, RJF Score St. Dev., Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores
"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.03817","0.02733",0.02217,0.01603,0.03017,0.02379,0.0169558484245125
"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.04989","0.02389",0.01114,0.00204,0.03439,0.02654,0.0236244113650011
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.04886","0.00972",0.0588,0.01459,0.05383,0.01336,0.0543440472804273
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.01802","0.02114",0.02085,0.02215,0.01944,0.0217,0
"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.03355","0.02283",0.0491,0.0359,0.04132,0.03107,0.034575392686704
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.14195","0.08182",0.11547,0.08178,0.12871,0.08287,0.172671533769476
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.0331","0.00741",0.03436,0.0114,0.03373,0.00964,0.0225814607629342
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.15982","0.08804",0.07127,0.02823,0.11554,0.07896,0.151859928573686
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.02077","0.00909",0.05373,0.04047,0.03725,0.03364,0.0281438639739578
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.02837","0.01308",0.08544,0.10099,0.0569,0.07746,0.0591953478082235
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.38247","0.29736",0.5065,0.47115,0.44449,0.39881,0.671675990012958
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.10975","0.06659",0.08957,0.07167,0.09966,0.06991,0.126765904996682
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.03914","0.04533",0.02354,0.01732,0.03134,0.03519,0.0188047154009039
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.0863","0.09679",0.11996,0.0915,0.10313,0.09568,0.132249296798458
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.03202","0.01924",0.02276,0.0048,0.02739,0.01476,0.0125628140703518
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.035","0.0186",0.02647,0.01219,0.03073,0.01629,0.0178407762080845
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.08479","0.08607",0.05899,0.03141,0.07189,0.06605,0.0828829683006226
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.03552","0.0203",0.01921,0.00289,0.02737,0.01663,0.0125312095066528
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.07652","0.06388",0.05592,0.02566,0.06622,0.04975,0.0739230744919566
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.0844","0.05966",0.06683,0.05509,0.07561,0.05809,0.0887614171486363
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.61161","0.19176",0.69291,0.15635,0.65226,0.17962,1
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.18746","0.20959",0.25806,0.31553,0.22276,0.27017,0.321291994564015
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.10327","0.05274",0.21018,0.06962,0.15672,0.08168,0.216933725229923
"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.02448","0.00746",0.02399,0.00652,0.02423,0.00701,0.0155720693579701
"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.03473","0.00956",0.01771,0.00462,0.02622,0.01135,0.0182365936935128
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.581","0.09418",0.56779,0.04772,0.57439,0.07495,0.752212626364062
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.01331","0.00556",0.0187,0.00287,0.01601,0.00518,0.00456584320814086
"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.03704","0.03129",0.01949,0.00864,0.02827,0.02458,0.0209814554462074
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.07275","0.04506",0.07182,0.06726,0.07229,0.05725,0.079922340496753
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.07893","0.02843",0.03387,0.01011,0.0564,0.03103,0.0586463145209881
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.09021","0.04888",0.04174,0.00472,0.06598,0.04234,0.0714735221262636
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.02903","0.01205",0.02618,0.0139,0.0276,0.01308,0.0200843542880096
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01867","0.01278",0.05101,0.04916,0.03484,0.03939,0.0297784026243556
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.43145","0.33746",0.23659,0.21148,0.33402,0.29798,0.43036754368347
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.01832","0.00821",0.02884,0.01897,0.02358,0.01553,0.0147017473388231
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.01344","0.0052",0.01703,0.01834,0.01523,0.0136,0.00352145678516436
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06993","0.07992",0.1406,0.10665,0.10527,0.10065,0.124081140791324
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.05132","0.02707",0.01624,0.00282,0.03378,0.02604,0.0283591082546696
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.0157","0.00509",0.00951,0.00289,0.0126,0.00517,0
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.06724","0.0615",0.14745,0.17078,0.10734,0.13447,0.126852781683069
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01518","0.00666",0.01649,0.00089,0.01583,0.0048,0.00432483095668474
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.38843","0.37503",0.21575,0.23362,0.30209,0.32414,0.387614648189061
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.13366","0.10189",0.221,0.22164,0.17733,0.17793,0.220566378790922
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.38109","0.17592",0.3918,0.20351,0.38644,0.19029,0.500555667135302
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.74106","0.08601",0.77784,0.21525,0.75945,0.16494,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.0854","0.00865",0.09276,0.02846,0.08908,0.02135,0.102403427729798
"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.82793","0.12708",0.61876,0.1542,0.72335,0.17579,0.721497940120522
"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.06744","0.04867",0.03685,0.04141,0.05215,0.0477,0.010654183832329
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.59825","0.16603",0.52675,0.00464,0.5625,0.12276,0.551147495843174
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.00625","0.00296",0.06599,0.03845,0.04209,0.0418,0
"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.26736","0.11858",0.23906,0.0644,0.25321,0.09646,0.223589591519015
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09094","0.08502",0.09485,0.08103,0.0929,0.08308,0.053811041801256
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.38957","0.22116",0.14755,0.07015,0.26856,0.20386,0.239846223907311
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.39665","0.29413",0.08097,0.06118,0.23881,0.26465,0.208339069929996
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.31517","0.16455",0.19525,0.11266,0.25521,0.15323,0.22570771951749
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.16614","0.06825",0.1057,0.10104,0.13592,0.09137,0.0993719750484522
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.48708","0.30079",0.49774,0.22524,0.49241,0.26577,0.476917700136619
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.67841","0.31215",0.35775,0.30709,0.51808,0.34868,0.504103872997045
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.35418","0.1657",0.4791,0.10519,0.41664,0.15219,0.396672420914396
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.76282","0.24459",0.57969,0.19947,0.67125,0.24123,0.666320705760249
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.17878","0.10697",0.08416,0.06652,0.13147,0.10086,0.0946591402518454
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.07854","0.03972",0.0704,0.04567,0.07447,0.04299,0.0342924922953094
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.97471","0.03686",0.99599,0.00896,0.98632,0.02782,1
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.99913","0.00123",0.52207,0.16914,0.7606,0.26684,0.760948074092118
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.30174","0.0561",0.40948,0.13845,0.36639,0.12468,0.343454454952713
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.0666","0.04775",0.08923,0.0459,0.07792,0.04818,0.0379462630926787
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.73761","0.09084",0.86549,0.13464,0.80155,0.13144,0.804316744860892
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.92653","0.07311",0.88006,0.05069,0.9033,0.06706,0.912076506783305
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.47941","0.04806",0.44671,0.05691,0.46306,0.05515,0.445834171758999
"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.40171","0.08558",0.48821,0.07159,0.44496,0.08997,0.49933705966463
"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.41642","0.02187",0.2746,0.146,0.34551,0.1262,0.370063694267516
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.28098","0.04302",0.21823,0.04747,0.24961,0.0551,0.24540491355778
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.15272","0.11125",0.14363,0.0057,0.14818,0.0789,0.113557779799818
"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.24988","0.037",0.23664,0.06438,0.24194,0.05546,0.235434810867022
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.26382","0.07863",0.20863,0.14597,0.23622,0.12044,0.227999480046796
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.2094","0.16055",0.20993,0.09116,0.20972,0.12368,0.193552580267776
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.24209","0.213",0.06532,0.04082,0.15371,0.177,0.120746132848044
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.3642","0.08498",0.4672,0.1238,0.4157,0.11801,0.46130248277655
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.19619","0.05391",0.14958,0.08527,0.17289,0.07504,0.145677888989991
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.05232","0.03199",0.06933,0.01465,0.06082,0.02629,0
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.53897","0.08691",0.48224,0.20257,0.5106,0.15842,0.584661380475757
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.33646","0.14253",0.36342,0.09994,0.34994,0.12383,0.37582217600416
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.65615","0.05019",0.62589,0.10369,0.64102,0.08285,0.754192122708956
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.33137","0.06543",0.11373,0.03314,0.22255,0.12055,0.210230079292864
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.43061","0.00815",0.36724,0.03353,0.39259,0.0408,0.431262186403224
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.78181","0.09756",0.8426,0.07051,0.8122,0.09038,0.97670609645132
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.56305","0.0685",0.42333,0.0852,0.49319,0.1042,0.562030417262446
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.20943","0.11239",0.23981,0.06562,0.22462,0.09327,0.212920837124659
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.82561","0.16137",0.83463,0.0373,0.83012,0.1172,1
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.59941","0.28423",0.59199,0.18482,0.5957,0.23976,0.69528142467178
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.65525","0.03979",0.61975,0.0301,0.6375,0.03949,0.749616534511894
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.43027","0.05191",0.36889,0.06242,0.39958,0.06509,0.440348368646822
"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.78618","0.01644",0.73301,0.06967,0.7596,0.05717,0.729699341114035
"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.26531","0.06375",0.245,0.03492,0.25515,0.05239,0.162506465177989
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.49648","0.04984",0.43892,0.08436,0.4677,0.07502,0.401493175020801
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.09882","0.06738",0.12243,0.04562,0.11062,0.05873,0
"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.67327","0.10005",0.65267,0.04901,0.66297,0.07945,0.621050619532708
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.3699","0.06271",0.24104,0.14096,0.30547,0.1267,0.219085205424003
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.33445","0.07006",0.51052,0.05803,0.42248,0.10903,0.350648766556478
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.45832","0.13866",0.242,0.16268,0.35016,0.18586,0.269333693134543
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.27806","0.07975",0.19083,0.09499,0.23444,0.09795,0.139220580629202
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.46581","0.11926",0.50242,0.14036,0.48412,0.13152,0.419955474600283
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.51701","0.03141",0.42434,0.14905,0.47068,0.11725,0.404843823787357
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.5149","0.37242",0.42545,0.28168,0.47018,0.3332,0.404281634396996
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.68989","0.13151",0.7232,0.1498,0.70655,0.14193,0.670051046796645
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.61974","0.05117",0.42325,0.20437,0.52149,0.17845,0.461973509635926
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.25119","0.01975",0.38456,0.06049,0.31787,0.08044,0.233027502304976
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46279","0.0582",0.26596,0.09603,0.36437,0.12645,0.285311115608626
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"1.0","0.0",0.98663,0.0299,0.99271,0.02307,0.991803278688525
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.87304","0.06833",0.72027,0.06147,0.79665,0.10029,0.771357574939846
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.43189","0.09024",0.42998,0.08187,0.43094,0.08616,0.3601610110414
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.46065","0.26402",0.36627,0.22954,0.41346,0.25184,0.34050686995435
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.49668","0.11005",0.64057,0.31092,0.56862,0.24406,0.514965481571432
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"1.0","0.0",1,0,1,0,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.71322","0.05879",0.52849,0.0471,0.62085,0.10662,0.573691785288628
"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.68093","0.01071",0.61408,0.02662,0.64082,0.03929,0.6356663585841
"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.10936","0.06266",0.11311,0.03415,0.11124,0.05049,0
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.52249","0.05964",0.48237,0.11294,0.50243,0.09252,0.469553840429235
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.49733","0.022",0.11014,0.04516,0.30373,0.19683,0.23104992137893
"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.67622","0.064",0.72153,0.02386,0.69887,0.05334,0.705345032468702
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.55893","0.06283",0.30529,0.13371,0.42058,0.16582,0.371307510412791
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.42005","0.05842",0.40877,0.08216,0.41441,0.07151,0.363901525608863
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.2383","0.22991",0.3949,0.11151,0.3166,0.19692,0.246498061480477
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.36433","0.14421",0.25377,0.08006,0.30905,0.12907,0.237435632749577
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.49469","0.07462",0.40608,0.15895,0.45039,0.13183,0.407089099878768
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.64694","0.12155",0.5825,0.10295,0.61472,0.11715,0.60433796257397
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.44121","0.26979",0.36421,0.22243,0.40271,0.25023,0.349857761880184
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.62849","0.03307",0.6783,0.12799,0.6534,0.09674,0.650766405396646
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.45649","0.08838",0.32538,0.23858,0.39094,0.19148,0.33572997563347
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.48191","0.0287",0.48663,0.04877,0.48427,0.04008,0.447755998607627
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.40027","0.02888",0.22052,0.05256,0.31039,0.09938,0.239044063809101
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.98119","0.01927",0.9075,0.07531,0.94435,0.06617,1
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.72383","0.0552",0.56955,0.07314,0.64669,0.10074,0.642712246882164
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.22056","0.1053",0.13292,0.07596,0.17674,0.10173,0.0786210704468798
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.88483","0.11788",0.82153,0.1236,0.85318,0.12485,0.890566671868061
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.37129","0.08841",0.3182,0.09442,0.34233,0.09547,0.277382338466709
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.9248","0.01514",0.82914,0.12286,0.87697,0.09975,0.919122324783042
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.56838","0.05006",0.35209,0.05282,0.46024,0.11976,0.418912268487955
norm_adhesion_scores_sorted.csv deleted 100644 → 0
+ 0
− 139
View file @ 0b113eda
"MAY.Strain..","Species","Soll.Clade","Isolation.Site","MTL.Genotype","Media","Temperature..C.","MJD.Phenotype.Score","MJD.Score.St..Dev.","RJF.Phenotype.Score","RJF.Score.St..Dev.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores"
"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.40436","0.05654","0.32061","0.08573",0.36248,0.08383,0.370045797093798
"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.15948","0.05864","0.24497","0.06442",0.20222,0.07498,0.158534492998456
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.1274","0.01752","0.15739","0.04949",0.14239,0.04004,0.0795708007232509
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.31109","0.08324","0.24456","0.04805",0.27783,0.07567,0.258324644643588
"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.11858","0.02737","0.19708","0.02142",0.15783,0.04631,0.0999485277620135
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.26181","0.07878","0.15512","0.07884",0.20847,0.09517,0.166783249086038
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.08135","0.02328","0.24382","0.09556",0.16258,0.10694,0.106217582388576
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.3105","0.08328","0.23153","0.09308",0.27102,0.09674,0.249336800010558
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.16264","0.04631","0.1451","0.0605",0.15387,0.05458,0.0947221159049215
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.10856","0.03489","0.21571","0.08742",0.16213,0.08544,0.10562367195027
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.2575","0.07505","0.44473","0.31395",0.35111,0.24671,0.355039660019269
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.18884","0.07321","0.20839","0.05588",0.19862,0.06585,0.153783209492009
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.17602","0.07286","0.20442","0.08652",0.19022,0.08123,0.142696881310298
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.20169","0.07452","0.28724","0.09075",0.24446,0.0934,0.21428288614077
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.23349","0.02271","0.1584","0.01762",0.19594,0.04269,0.150246142881653
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.32406","0.03246","0.37088","0.123",0.34747,0.09295,0.350235584473861
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.07391","0.06126","0.09194","0.07791",0.0821,0.06991,0
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.15916","0.0304","0.26966","0.1231",0.21441,0.10532,0.174622866871676
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.2034","0.0736","0.15831","0.04921",0.18085,0.06654,0.130330346183795
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.25116","0.11163","0.14601","0.04573",0.19858,0.1002,0.153730417453048
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.80052","0.24837","0.87906","0.13587",0.83979,0.204,1
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.17586","0.12293","0.39536","0.06949",0.28561,0.14838,0.26859269622141
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.09402","0.01649","0.08434","0.03859",0.08918,0.03007,0.00934419089601287
"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.25164","0.11526","0.1191","0.06192",0.18537,0.1138,0.163377244386105
"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.22801","0.12081","0.12552","0.10411",0.17677,0.12387,0.153298016970606
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.32246","0.028","0.37487","0.05085",0.34866,0.0487,0.354753644929914
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.10527","0.00646","0.03499","0.00405",0.07013,0.03555,0.0283155970184239
"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.06624","0.0356","0.09794","0.07738",0.08209,0.06228,0.042332755145094
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.23132","0.05614","0.06809","0.02142",0.1497,0.09202,0.121571890675543
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.12591","0.02525","0.03691","0.02207",0.08141,0.05043,0.0415357929773569
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.64167","0.27566","0.43363","0.20496",0.53765,0.26423,0.576250527401434
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.10193","0.04626","0.05361","0.02397",0.07777,0.04405,0.0372697013735877
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.04006","0.02071","0.09068","0.04648",0.06537,0.04399,0.0227368618442642
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.15329","0.06512","0.15873","0.10503",0.15601,0.08742,0.128967230790868
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.13993","0.05973","0.07499","0.03658",0.10746,0.05922,0.0720664760208148
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.10765","0.05497","0.05846","0.0471",0.08306,0.05679,0.0434695982373072
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06247","0.02983","0.09085","0.04115",0.07666,0.03864,0.0359687778350757
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.16472","0.06514","0.08328","0.03977",0.124,0.0676,0.0914514087478318
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.14465","0.04937","0.05299","0.00119",0.09882,0.05762,0.0619403684778023
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.04013","0.03626","0.05182","0.04795",0.04597,0.04291,0
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.09","0.03182","0.0812","0.02335",0.0856,0.02825,0.0464464863344428
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.25647","0.21209","0.19529","0.2114",0.22588,0.21394,0.210855093525854
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.09922","0.02733","0.2285","0.20024",0.16386,0.15684,0.13816745581548
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.84961","0.19931","0.9488","0.0882",0.89921,0.1619,1
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.45062","0.23578","0.52365","0.17176",0.48713,0.20948,0.51704092635132
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.11826","0.07866","0.08255","0.02993",0.10041,0.06213,0.0638038535464816
"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.03713","0.03013","0.15927","0.0677",0.0982,0.08047,0.0690805864677548
"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.1376","0.10131","0.07287","0.01717",0.10524,0.07954,0.0797106920138312
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.2137","0.09117","0.11156","0.02141",0.16263,0.08362,0.166367191628792
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.04399","0.02055","0.13808","0.04951",0.09103,0.06041,0.0582541863590379
"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.06118","0.0323","0.04371","0.0123",0.05245,0.02595,0
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.07587","0.05797","0.11829","0.06029",0.09708,0.06283,0.0673894333126972
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.10218","0.07352","0.0792","0.05128",0.09069,0.06442,0.057740800579824
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.10666","0.05126","0.21475","0.14279",0.1607,0.12012,0.163452972352666
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.23123","0.12379","0.18296","0.07651",0.2071,0.10569,0.233515031633624
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09138","0.07086","0.09668","0.03768",0.09403,0.05681,0.0627840608815136
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.31698","0.29241","0.08156","0.0525",0.19927,0.2408,0.221692059129962
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.20847","0.0641","0.02556","0.00252",0.11701,0.10209,0.0974828997236777
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.15561","0.12283","0.19498","0.13731",0.1753,0.13175,0.185498361695381
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.20962","0.07886","0.18925","0.05945",0.19944,0.07057,0.221948752019569
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.03226","0.01597","0.12031","0.02159",0.07629,0.04794,0.0359974028719404
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.06731","0.05024","0.13541","0.05233",0.10136,0.06157,0.073852054298096
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.76981","0.26568","0.43608","0.28171",0.58777,0.32092,0.808310809790569
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.24403","0.12318","0.07548","0.0362",0.15975,0.12387,0.162018512087215
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.09296","0.05803","0.23065","0.16411",0.16181,0.14103,0.165129025925982
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.09186","0.08274","0.07591","0.02051",0.08316,0.05835,0.0463708155284099
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.51867","0.36484","0.42939","0.20735",0.47403,0.30007,0.636568167061772
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.90286","0.07192","0.52658","0.05493",0.71472,0.19872,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.07615","0.02668","0.10551","0.01848",0.09083,0.02724,0.0579521947242061
"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.16356","0.08142","0.17102","0.04669",0.16729,0.06647,0.177445193004016
"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.14409","0.07049","0.06683","0.05303",0.10546,0.07337,0.109603019596656
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.11518","0.02917","0.02711","0.0122",0.07115,0.04939,0.0719568127455068
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.13688","0.03178","0.0628","0.01808",0.09984,0.04517,0.10343654677522
"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.00753","0.0075","0.00427","0.0029",0.00557,0.00548,0
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.16561","0.08857","0.08871","0.06018",0.12716,0.08492,0.133413065900064
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.00339","0.00277","0.02131","0.00775",0.01414,0.01078,0.00940332243411091
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.03031","0.01226","0.06998","0.04102",0.05014,0.03619,0.0489038600803178
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.08762","0.05006","0.06852","0.02908",0.07807,0.04203,0.0795496938708332
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.1018","0.10917","0.10321","0.05984",0.1025,0.08804,0.106355197612412
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.06999","0.10789","0.00236","0.0023",0.03617,0.08346,0.0335754569992758
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.33427","0.343","0.31403","0.21948",0.32415,0.28812,0.349557813425794
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.11189","0.08451","0.13228","0.05773",0.12209,0.07309,0.12785007351489
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.16396","0.09244","0.10888","0.07948",0.13642,0.0905,0.143573481972394
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.06425","0.01249","0.05389","0.05717",0.05907,0.0417,0.0587021878908907
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.02649","0.01886","0.07213","0.03876",0.05388,0.03929,0.0530075270468959
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.18256","0.12145","0.13611","0.13072",0.15934,0.12829,0.168722157607145
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.06098","0.02017","0.12882","0.12385",0.0949,0.09499,0.0980161952204349
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.08774","0.11834","0.11535","0.0612",0.10154,0.09521,0.105301849941846
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.50462","0.36976","0.25544","0.19731",0.38003,0.32148,0.410871425749961
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.4998","0.11333","0.22974","0.12861",0.36477,0.18145,0.394127586736597
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"1.0","0.0","0.8339","0.1185",0.91695,0.11797,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.17179","0.02492","0.13819","0.07767",0.15499,0.06008,0.163949175974895
"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.39405","0.04549","0.56385","0.08526",0.47895,0.10898,0.0281911738154806
"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.46491","0.11488","0.48053","0.09357",0.47272,0.10506,0.0121224626653942
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.61432","0.0298","0.66708","0.08144",0.6407,0.06675,0.445384436821336
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.50564","0.08554","0.62897","0.09409",0.56731,0.10903,0.256093471924892
"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.59612","0.10421","0.55963","0.10643",0.57788,0.10689,0.283356116685151
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.65115","0.19124","0.54811","0.15243",0.59963,0.18044,0.339454747104795
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.70757","0.21187","0.88699","0.11268",0.79728,0.19194,0.849242990895257
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.79183","0.22266","0.68098","0.15271",0.73641,0.1988,0.692244203141523
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.55325","0.13944","0.55712","0.12697",0.55519,0.13336,0.224832993732429
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.52573","0.08604","0.49517","0.10916",0.51045,0.09946,0.109437466147378
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.6314","0.11966","0.58915","0.17981",0.61028,0.15418,0.366923731655103
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.47863","0.04573","0.5838","0.02883",0.53121,0.06501,0.162982641665162
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.47489","0.13595","0.50155","0.0844",0.48822,0.11393,0.052100796987439
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.48031","0.11021","0.56073","0.10101",0.52052,0.1131,0.135410487219829
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.51937","0.13251","0.72099","0.07673",0.62018,0.14794,0.392458280673699
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.24004","0.05309","0.696","0.15599",0.46802,0.25603,0
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.48709","0.06416","0.50157","0.10367",0.49499,0.08823,0.069562301720358
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.51096","0.05616","0.45124","0.12315",0.4811,0.10026,0.0337365556730547
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.56296","0.15388","0.56255","0.10673",0.56276,0.13242,0.244357896365841
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.54269","0.17894","0.61894","0.10128",0.58081,0.15031,0.290913311495706
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.77746","0.16655","0.93399","0.10599",0.85573,0.16004,1
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.41339","0.02825","0.64693","0.03716",0.50681,0.11883,0.100049005700137
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.65838","0.12181","0.7831","0.1131",0.72074,0.13305,0.651827396765624
"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.36551","0.10623","0.5587","0.02997",0.48142,0.11837,0.189534327489029
"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.43244","0.03875","0.60468","0.09646",0.51856,0.11322,0.266778977142738
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.78417","0.17975","0.65753","0.12574",0.72085,0.16754,0.687506499448847
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.46326","0.07061","0.51721","0.08596",0.49024,0.08315,0.207878371914062
"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.50838","0.06669","0.63416","0.10398",0.57127,0.10763,0.376406480730434
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.50186","0.17053","0.63349","0.14099",0.57366,0.16839,0.381377259208419
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.51884","0.04168","0.50801","0.02032",0.51342,0.03323,0.256088683679624
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.4938","0.12506","0.52802","0.15591",0.51091,0.14236,0.250868326365924
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.40261","0.11039","0.40341","0.07045",0.40301,0.0926,0.0264553565857614
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.44092","0.08319","0.47094","0.03778",0.45593,0.06632,0.136519623135958
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.47157","0.135","0.52886","0.18005",0.50022,0.16169,0.228635011751003
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.54455","0.22942","0.51176","0.10306",0.52816,0.1786,0.286745283999917
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.44623","0.12472","0.51861","0.18453",0.48242,0.1616,0.191614151119985
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.52239","0.13155","0.45116","0.07877",0.48678,0.11412,0.200682182150954
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.3455","0.07704","0.48618","0.11849",0.41584,0.12221,0.0531394937709282
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.29302","0.04316","0.48757","0.16887",0.39029,0.15701,0
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.45448","0.11775","0.45207","0.06482",0.45328,0.09506,0.131008090513924
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.37452","0.08104","0.543","0.1719",0.45876,0.1586,0.142405524011564
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.47471","0.09132","0.63763","0.15857",0.55617,0.1529,0.345001143902997
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.51085","0.12898","0.46492","0.20497",0.48788,0.17278,0.202969988145005
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.82542","0.1505","0.90916","0.09297",0.8711,0.12942,1
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.23814","0.19592","0.73597","0.13796",0.48706,0.30111,0.201264532767621
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.72552","0.15428","0.60079","0.06865",0.66316,0.13471,0.56752147417899
norm_biofilm_scores_sorted.csv deleted 100644 → 0
+ 0
− 139
View file @ 0b113eda
"MAY.Strain..","Species","Soll.Clade","Isolation.Site","Media","Temperature..C.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores"
"12C","Candida albicans","I","Oral cavity","LEE",30,0.095333333,0.020572365,0.313043477483122
"19F","Candida albicans","I","Vagina","LEE",30,0.116333333,0.03058322,0.469565216224683
"529L","Candida albicans","529L","Oral cavity","LEE",30,0.172138889,0.029546325,0.885507247489423
"GC75","Candida albicans","SA","Oral cavity","LEE",30,0.142,0.022211108,0.660869566059951
"L26","Candida albicans","I","Vagina","LEE",30,0.092666667,0.021644219,0.293167706103931
"P34048","Candida albicans","III","Bloodstream","LEE",30,0.1875,0.013313527,1
"P37005","Candida albicans","I","Oral cavity","LEE",30,0.094333333,0.013421583,0.305590061352571
"P37037","Candida albicans","I","Oral cavity","LEE",30,0.102166667,0.004633813,0.363975159344161
"P37039","Candida albicans","I","Bloodstream","LEE",30,0.08,0.014302292,0.198757765965819
"P57055","Candida albicans","III","Bloodstream","LEE",30,0.122666667,0.01060922,0.516770190020447
"P57072","Candida albicans","II","Bloodstream","LEE",30,0.142833333,0.03977611,0.667080743684271
"P60002","Candida albicans","SA","Bloodstream","LEE",30,0.130333333,0.023534844,0.57391304205239
"P75010","Candida albicans","E","Bloodstream","LEE",30,0.100833333,0.028121265,0.35403726620115
"P75016","Candida albicans","SA","Bloodstream","LEE",30,0.134166667,0.013973189,0.602484475521778
"P75063","Candida albicans","SA","Bloodstream","LEE",30,0.097833333,0.028726681,0.331677017809498
"P76055","Candida albicans","II","Bloodstream","LEE",30,0.099166667,0.022549329,0.34161491095251
"P76067","Candida albicans","II","Bloodstream","LEE",30,0.0745,0.026060293,0.157763977247791
"P78042","Candida albicans","III","Bloodstream","LEE",30,0.1085,0.025751483,0.411180125686509
"P78048","Candida albicans","I","Bloodstream","LEE",30,0.130666667,0.009546669,0.576397519064851
"P87","Candida albicans","SA","Oral cavity","LEE",30,0.1075,0.013503086,0.403726709555958
"P94015","Candida albicans","I","Bloodstream","LEE",30,0.053333333,0.006497863,0
"SC5314","Candida albicans","I","Bloodstream","LEE",30,0.136166667,0.015614274,0.617391307782879
"WO-1","Candida albicans","WO-1","Bloodstream","LEE",30,0.085166667,0.022086321,0.237267085124802
"12C","Candida albicans","I","Oral cavity","LEE",37,0.070166667,0.007717225,0.3673647486911
"19F","Candida albicans","I","Vagina","LEE",37,0.0315,0.035251478,0.164921465968586
"529L","Candida albicans","529L","Oral cavity","LEE",37,0.029566667,0.004127953,0.154799303664921
"GC75","Candida albicans","SA","Oral cavity","LEE",37,0.036,0.019735051,0.18848167539267
"L26","Candida albicans","I","Vagina","LEE",37,0.0385,0.010011105,0.201570680628272
"P34048","Candida albicans","III","Bloodstream","LEE",37,0.067833333,0.009994443,0.355148340314136
"P37005","Candida albicans","I","Oral cavity","LEE",37,0.043,0.009788031,0.225130890052356
"P37037","Candida albicans","I","Oral cavity","LEE",37,0.116166667,0.089786166,0.608202445026178
"P37039","Candida albicans","I","Bloodstream","LEE",37,0.032666667,0.007371115,0.171029670157068
"P57055","Candida albicans","III","Bloodstream","LEE",37,0.0255,0.008205689,0.133507853403141
"P57072","Candida albicans","II","Bloodstream","LEE",37,0.093166667,0.01338739,0.487783596858639
"P60002","Candida albicans","SA","Bloodstream","LEE",37,0.093,0.056799844,0.486910994764398
"P75010","Candida albicans","E","Bloodstream","LEE",37,0.0405,0.009616248,0.212041884816754
"P75016","Candida albicans","SA","Bloodstream","LEE",37,0.054166667,0.025584826,0.283595115183246
"P75063","Candida albicans","SA","Bloodstream","LEE",37,0.031333333,0.010563301,0.164048863874346
"P76055","Candida albicans","II","Bloodstream","LEE",37,0.087833333,0.047346242,0.459860382198953
"P76067","Candida albicans","II","Bloodstream","LEE",37,0,0.015227898,0
"P78042","Candida albicans","III","Bloodstream","LEE",37,0.066833333,0.017062793,0.349912738219895
"P78048","Candida albicans","I","Bloodstream","LEE",37,0.038666667,0.007289643,0.202443282722513
"P87","Candida albicans","SA","Oral cavity","LEE",37,0.033666667,0.007559027,0.176265272251309
"P94015","Candida albicans","I","Bloodstream","LEE",37,0.069666667,0.007243771,0.364746947643979
"SC5314","Candida albicans","I","Bloodstream","LEE",37,0.191,0.035179303,1
"WO-1","Candida albicans","WO-1","Bloodstream","LEE",37,0.027,0.012212243,0.141361256544503
"12C","Candida albicans","I","Oral cavity","SPI",30,0.201,0.017663522,0.666471278624234
"19F","Candida albicans","I","Vagina","SPI",30,0.288833333,0.108809849,0.975381008177469
"529L","Candida albicans","529L","Oral cavity","SPI",30,0.228333333,0.020055479,0.762602578854165
"GC75","Candida albicans","SA","Oral cavity","SPI",30,0.191666667,0.02208066,0.633645957366525
"L26","Candida albicans","I","Vagina","SPI",30,0.240166667,0.011728408,0.804220400708348
"P34048","Candida albicans","III","Bloodstream","SPI",30,0.2645,0.018282505,0.889800704442908
"P37005","Candida albicans","I","Oral cavity","SPI",30,0.271833333,0.012432037,0.915592028037036
"P37037","Candida albicans","I","Oral cavity","SPI",30,0.193,0.018015425,0.638335287969912
"P37039","Candida albicans","I","Bloodstream","SPI",30,0.233166667,0.018697148,0.779601408885816
"P57055","Candida albicans","III","Bloodstream","SPI",30,0.243166667,0.011710631,0.814771397203718
"P57072","Candida albicans","II","Bloodstream","SPI",30,0.224166667,0.099432417,0.747948419399705
"P60002","Candida albicans","SA","Bloodstream","SPI",30,0.200666667,0.012569805,0.665298946852637
"P75010","Candida albicans","E","Bloodstream","SPI",30,0.251,0.129727492,0.842321220213741
"P75016","Candida albicans","SA","Bloodstream","SPI",30,0.187333333,0.014161764,0.618405626750769
"P75063","Candida albicans","SA","Bloodstream","SPI",30,0.2305,0.118026833,0.770222744162043
"P76055","Candida albicans","II","Bloodstream","SPI",30,0.185166667,0.023723523,0.610785464959889
"P76067","Candida albicans","II","Bloodstream","SPI",30,0.229,0.090368997,0.764947245914358
"P78042","Candida albicans","III","Bloodstream","SPI",30,0.263666667,0.015362291,0.886869873255416
"P78048","Candida albicans","I","Bloodstream","SPI",30,0.227,0.010657548,0.757913248250778
"P87","Candida albicans","SA","Oral cavity","SPI",30,0.198333333,0.018568941,0.65709261390046
"P94015","Candida albicans","I","Bloodstream","SPI",30,0.0115,0.003947573,0
"SC5314","Candida albicans","I","Bloodstream","SPI",30,0.295833333,0.01332604,1
"WO-1","Candida albicans","WO-1","Bloodstream","SPI",30,0.182333333,0.038016078,0.600820632591818
"12C","Candida albicans","I","Oral cavity","SPI",37,0.091333333,0.009358597,0.166666665829146
"19F","Candida albicans","I","Vagina","SPI",37,0.158166667,0.156771242,0.33458961557789
"529L","Candida albicans","529L","Oral cavity","SPI",37,0.047,0.017198999,0.0552763819095477
"GC75","Candida albicans","SA","Oral cavity","SPI",37,0.1405,0.044180187,0.290201005025126
"L26","Candida albicans","I","Vagina","SPI",37,0.189666667,0.084082136,0.413735344221106
"P34048","Candida albicans","III","Bloodstream","SPI",37,0.099666667,0.012829004,0.187604690954774
"P37005","Candida albicans","I","Oral cavity","SPI",37,0.140166667,0.016079663,0.289363484924623
"P37037","Candida albicans","I","Oral cavity","SPI",37,0.025,0.028732966,0
"P37039","Candida albicans","I","Bloodstream","SPI",37,0.081333333,0.017240134,0.141541037688442
"P57055","Candida albicans","III","Bloodstream","SPI",37,0.2765,0.062311048,0.631909547738694
"P57072","Candida albicans","II","Bloodstream","SPI",37,0.149166667,0.081202764,0.311976550251256
"P60002","Candida albicans","SA","Bloodstream","SPI",37,0.262,0.128355842,0.595477386934673
"P75010","Candida albicans","E","Bloodstream","SPI",37,0.309833333,0.112417995,0.715661640703518
"P75016","Candida albicans","SA","Bloodstream","SPI",37,0.1315,0.052787046,0.267587939698493
"P75063","Candida albicans","SA","Bloodstream","SPI",37,0.127333333,0.049466319,0.257118927135678
"P76055","Candida albicans","II","Bloodstream","SPI",37,0.1255,0.041322579,0.25251256281407
"P76067","Candida albicans","II","Bloodstream","SPI",37,0.252666667,0.080844329,0.572026801507538
"P78042","Candida albicans","III","Bloodstream","SPI",37,0.265666667,0.060271607,0.604690118090452
"P78048","Candida albicans","I","Bloodstream","SPI",37,0.0675,0.009706813,0.10678391959799
"P87","Candida albicans","SA","Oral cavity","SPI",37,0.423,0.023212185,1
"P94015","Candida albicans","I","Bloodstream","SPI",37,0.033833333,0.008698659,0.0221943040201005
"SC5314","Candida albicans","I","Bloodstream","SPI",37,0.2955,0.018147543,0.67964824120603
"WO-1","Candida albicans","WO-1","Bloodstream","SPI",37,0.080833333,0.038594761,0.140284756281407
"12C","Candida albicans","I","Oral cavity","YPD",30,0.687833333,0.051020965,0.64463579208251
"19F","Candida albicans","I","Vagina","YPD",30,0.552333333,0.026159766,0.455434023230565
"529L","Candida albicans","529L","Oral cavity","YPD",30,0.525833333,0.121769477,0.41843146327059
"GC75","Candida albicans","SA","Oral cavity","YPD",30,0.382666667,0.021959559,0.218524552216453
"L26","Candida albicans","I","Vagina","YPD",30,0.578,0.052860666,0.491272981141515
"P34048","Candida albicans","III","Bloodstream","YPD",30,0.4895,0.046867722,0.367698394105374
"P37005","Candida albicans","I","Oral cavity","YPD",30,0.825666667,0.018649546,0.837095648905837
"P37037","Candida albicans","I","Oral cavity","YPD",30,0.525666667,0.050334437,0.418198743698579
"P37039","Candida albicans","I","Bloodstream","YPD",30,0.761166667,0.03512715,0.747032814286277
"P57055","Candida albicans","III","Bloodstream","YPD",30,0.384833333,0.014314911,0.221549917823179
"P57072","Candida albicans","II","Bloodstream","YPD",30,0.522666667,0.051629019,0.414009774646507
"P60002","Candida albicans","SA","Bloodstream","YPD",30,0.312,0.133677057,0.119851058524413
"P75010","Candida albicans","E","Bloodstream","YPD",30,0.549,0.043755635,0.450779613638147
"P75016","Candida albicans","SA","Bloodstream","YPD",30,0.3835,0.076235199,0.219688154265477
"P75063","Candida albicans","SA","Bloodstream","YPD",30,0.481333333,0.018397615,0.35629508899818
"P76055","Candida albicans","II","Bloodstream","YPD",30,0.585333333,0.059951833,0.501512682803363
"P76067","Candida albicans","II","Bloodstream","YPD",30,0.547666667,0.272198253,0.448917850080445
"P78042","Candida albicans","III","Bloodstream","YPD",30,0.616333333,0.050002222,0.544798696341446
"P78048","Candida albicans","I","Bloodstream","YPD",30,0.7795,0.022375582,0.772632069139057
"P87","Candida albicans","SA","Oral cavity","YPD",30,0.555833333,0.046129046,0.460321153791316
"P94015","Candida albicans","I","Bloodstream","YPD",30,0.226166667,0.022637849,0
"SC5314","Candida albicans","I","Bloodstream","YPD",30,0.942333333,0.112602546,1
"WO-1","Candida albicans","WO-1","Bloodstream","YPD",30,0.3555,0.085379057,0.180591109779466
"12C","Candida albicans","I","Oral cavity","YPD",37,0.311,0.041115353,0.235687168109339
"19F","Candida albicans","I","Vagina","YPD",37,0.527,0.176534935,0.432498102050114
"529L","Candida albicans","529L","Oral cavity","YPD",37,0.222833333,0.025597309,0.155353075170843
"GC75","Candida albicans","SA","Oral cavity","YPD",37,0.739,0.154473748,0.625664389066059
"L26","Candida albicans","I","Vagina","YPD",37,0.200166667,0.004818944,0.134700076537585
"P34048","Candida albicans","III","Bloodstream","YPD",37,0.186833333,0.046366894,0.12255125284738
"P37005","Candida albicans","I","Oral cavity","YPD",37,0.476833333,0.064052062,0.386788154897494
"P37037","Candida albicans","I","Oral cavity","YPD",37,0.092833333,0.039630235,0.0369020501138952
"P37039","Candida albicans","I","Bloodstream","YPD",37,0.556833333,0.214545579,0.459681093394078
"P57055","Candida albicans","III","Bloodstream","YPD",37,0.442,0.199082688,0.355049354897494
"P57072","Candida albicans","II","Bloodstream","YPD",37,0.999,0.15214622,0.862566439179955
"P60002","Candida albicans","SA","Bloodstream","YPD",37,0.834,0.229289967,0.712224753530752
"P75010","Candida albicans","E","Bloodstream","YPD",37,0.148666667,0.063838337,0.08777524738041
"P75016","Candida albicans","SA","Bloodstream","YPD",37,0.055333333,0.025249862,0.00273348519362186
"P75063","Candida albicans","SA","Bloodstream","YPD",37,0.230666667,0.085450603,0.162490509339408
"P76055","Candida albicans","II","Bloodstream","YPD",37,1.149833333,0.061313403,1
"P76067","Candida albicans","II","Bloodstream","YPD",37,0.515833333,0.261253176,0.422323462414579
"P78042","Candida albicans","III","Bloodstream","YPD",37,0.330333333,0.219723817,0.253302961275626
"P78048","Candida albicans","I","Bloodstream","YPD",37,0.285666667,0.064599837,0.212604404555809
"P87","Candida albicans","SA","Oral cavity","YPD",37,0.125333333,0.067227846,0.0665148063781321
"P94015","Candida albicans","I","Bloodstream","YPD",37,0.052333333,0.007932003,0
"SC5314","Candida albicans","I","Bloodstream","YPD",37,1.090166667,0.034047353,0.945634017312073
"WO-1","Candida albicans","WO-1","Bloodstream","YPD",37,0.178166667,0.123078566,0.114654518451025
norm_filamentation_scores_sorted.csv deleted 100644 → 0
+ 0
− 139
View file @ 0b113eda
"MAY.Strain..","Species","Soll.Clade","Isolation.Site","MTL.Genotype","Media","Temperature..C.","MJD.Phenotype.Score","MJD.Score.St..Dev.","RJF.Phenotype.Score","RJF.Score.St..Dev.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores"
"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.04099","0.04034",-0.08852,0.00525,-0.06476,0.03731,0.836297385839406
"19F","Candida albicans","I","Vagina","α/α","LEE",30,"-0.03515","0.0075",-0.06619,0.06579,-0.05067,0.04932,0.883399077355085
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"-0.02499","0.05624",-0.06038,0.05067,-0.04269,0.05638,0.910075549909741
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"-0.1212","0.04089",-0.50867,0.11858,-0.31493,0.21307,0
"L26","Candida albicans","I","Vagina","a/a","LEE",30,"-0.04675","0.03686",-0.41031,0.36015,-0.22853,0.31397,0.288827973524102
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.13806","0.25482",-0.19441,0.21593,-0.16624,0.23785,0.497058233602995
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.27506","0.35284",-0.05103,0.08298,-0.16304,0.27971,0.50775556595574
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"-0.01747","0.02972",-0.0878,0.02925,-0.05264,0.04589,0.876813532125426
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.0126","0.05173",-0.19819,0.31891,-0.1054,0.24658,0.700441264959551
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.04046","0.05759",-0.31142,0.36746,-0.17594,0.29585,0.464631944908738
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"-0.23778","0.20026",-0.02885,0.06863,-0.13332,0.18254,0.607107040181855
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"-0.09777","0.05773",-0.08857,0.0586,-0.09317,0.05835,0.741325132045196
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"-0.1085","0.05142",-0.1093,0.04122,-0.1089,0.0466,0.688741057698736
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"-0.1514","0.10162",-0.12686,0.0782,-0.13913,0.0915,0.587684696128903
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"-0.00565","0.04619",-0.03542,0.08033,-0.02053,0.06719,0.984154576452497
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.01368","0.06578",-0.01791,0.05565,-0.01579,0.06096,1
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.08998","0.07848",-0.06208,0.08878,-0.0773,0.08447,0.794377214682089
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.02409","0.06358",-0.06982,0.01683,-0.04696,0.05182,0.895801297051548
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"-0.04377","0.05186",-0.19432,0.22102,-0.11905,0.1773,0.654810456642375
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"-0.18624","0.26727",-0.10737,0.1309,-0.14681,0.2141,0.562011098482316
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"-0.19419","0.28298",-0.19917,0.27956,-0.19668,0.28129,0.395299859597513
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.01106","0.08714",-0.09,0.01917,-0.05053,0.07442,0.883867085645517
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"-0.03575","0.06478",-0.26474,0.38331,-0.15025,0.29778,0.550511466203116
"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.27621","0.27175",-0.51195,0.25542,-0.39408,0.28885,0.234671065483038
"19F","Candida albicans","I","Vagina","α/α","LEE",37,"-0.08923","0.03871",-0.27054,0.18985,-0.17988,0.16428,0.699585440496603
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"-0.172","0.03372",-0.05364,0.05817,-0.11282,0.07591,0.845137065092353
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"-0.10733","0.12608",-0.32594,0.13508,-0.21664,0.17035,0.619799014607254
"L26","Candida albicans","I","Vagina","a/a","LEE",37,"-0.18102","0.15419",-0.82338,0.02109,-0.5022,0.33951,0
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.07721","0.06021",-0.56364,0.23517,-0.32043,0.29769,0.394526078180279
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.05025","0.07355",-0.03269,0.04913,-0.04147,0.06316,1
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"-0.1874","0.20732",-0.02009,0.05022,-0.10374,0.17248,0.864844920018232
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.06909","0.06682",-0.17973,0.24474,-0.12441,0.18773,0.819981333970004
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.09342","0.13074",-0.08379,0.04193,-0.08861,0.09721,0.897684109999349
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"-0.25818","0.29755",-0.377,0.26048,-0.31759,0.28587,0.400690209016127
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"-0.10764","0.08043",-0.09909,0.04194,-0.10337,0.06428,0.865647993401775
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"-0.09211","0.0736",-0.15669,0.08917,-0.1244,0.0879,0.820003038656046
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"-0.06784","0.073",-0.07824,0.03059,-0.07304,0.05621,0.931478306166301
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"-0.51613","0.27766",-0.01219,0.00601,-0.26416,0.31946,0.516658346537017
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.128","0.02438",-0.25605,0.13317,-0.19203,0.11517,0.673214246955918
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.06589","0.06482",-0.14899,0.09736,-0.10744,0.09255,0.856814186182797
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.08498","0.02669",-0.1091,0.02424,-0.09704,0.0282,0.879387059666182
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"-0.2315","0.11715",-0.17935,0.13163,-0.20542,0.1273,0.64415167234606
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"-0.24112","0.19811",-0.1087,0.06223,-0.17491,0.16107,0.710372669459336
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"-0.27706","0.28252",-0.0714,0.05421,-0.17423,0.22793,0.711848588110173
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.11099","0.06829",-0.08615,0.00656,-0.09857,0.05007,0.876066242701799
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"-0.38543","0.26521",-0.34904,0.30265,-0.36724,0.28513,0.292926442819005
"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.2469","0.01296",0.39794,0.17955,0.32242,0.14801,0.0865159461569008
"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.32672","0.0526",0.2889,0.00079,0.30781,0.04173,0.0765127966368603
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.76397","0.3195",0.35123,0.14109,0.5576,0.32184,0.247538581620497
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.28803","0.12367",0.28736,0.02878,0.2877,0.08979,0.0627439166335739
"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.1824","0.03441",0.28318,0.05332,0.23279,0.06747,0.0251482328453859
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34379","0.15011",0.24816,0.06084,0.29598,0.12411,0.0684130527065332
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.22349","0.06303",0.19419,0.03096,0.20884,0.05177,0.00875018828652415
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.42458","0.16919",0.20811,0.03882,0.31635,0.16365,0.0823599490599367
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.17708","0.03416",0.25065,0.05002,0.21387,0.05646,0.01219411998302
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34398","0.28243",0.23475,0.03919,0.28936,0.20889,0.0638804825612445
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.27147","0.09582",0.18553,0.05762,0.2285,0.08998,0.0222109630684541
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.28738","0.09165",0.41674,0.36199,0.35206,0.27185,0.106809810070248
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.30983","0.13422",0.37159,0.34613,0.34071,0.26432,0.0990387117093678
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.27907","0.12028",0.28337,0.1203,0.28122,0.12031,0.0583072014460405
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.23418","0.04655",0.24566,0.07532,0.23992,0.06287,0.030029988908212
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.27443","0.13986",0.16728,0.03279,0.22086,0.11484,0.0169800210880907
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"1.96451","1.08699",1.40001,0.48797,1.6566,0.86369,1
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.48766","0.13675",0.38665,0.0365,0.43716,0.1121,0.165075930820108
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.22606","0.10838",0.29909,0.08999,0.26257,0.10609,0.0455379517164884
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.1748","0.01382",0.20668,0.05681,0.19606,0.04941,0
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.94036","0.56363",1.02914,0.41858,0.98475,0.49841,0.539998904514769
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.5454","0.12933",0.47513,0.15885,0.51027,0.14905,0.215132759116491
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"1.36474","0.92771",0.43757,0.2214,0.90116,0.81838,0.482766647952127
"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.36402","0.11843",0.46793,0.3715,0.42637,0.30168,0.235425285744338
"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.36736","0.15235",0.3179,0.00507,0.34263,0.11059,0.117986115980646
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.441","0.16246",0.62106,0.24005,0.53103,0.22386,0.382203211555992
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.22402","0.02924",0.35762,0.06411,0.29082,0.08333,0.0453264146974266
"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.14651","0.01592",0.47404,0.16117,0.34302,0.20355,0.118533062197602
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.40667","0.19144",0.33579,0.15025,0.37123,0.17569,0.158095505224038
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.37134","0.084",0.21147,0.05498,0.27542,0.10378,0.0237290512586775
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.57556","0.08937",0.47688,0.29484,0.52622,0.22336,0.375457541546876
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.22933","0.06008",0.28768,0.06033,0.2585,0.06691,0
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.37073","0.21586",0.30106,0.08404,0.3359,0.16746,0.108547787672674
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.28902","0.08601",0.47858,0.20827,0.37518,0.18072,0.163635088703457
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.38247","0.11911",0.33901,0.11068,0.36074,0.11701,0.143384054414136
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.2752","0.04497",0.33501,0.10986,0.3051,0.08911,0.0653530607951756
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.37552","0.15942",0.36015,0.1474,0.36784,0.15372,0.153341280415118
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.25639","0.0595",0.32908,0.09455,0.29274,0.08695,0.0480190729962836
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.47839","0.23091",0.24837,0.08096,0.36338,0.20776,0.147086459575065
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.48725","0.12839",0.37463,0.0877,0.43094,0.12353,0.241834373466096
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.36157","0.11721",0.31645,0.0139,0.33901,0.08645,0.112909333146343
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.28549","0.07521",0.24891,0.06627,0.2672,0.0732,0.0122011079166959
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.78745","0.32976",0.78296,0.27819,0.78521,0.30508,0.738671902391137
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.41015","0.29012",0.44398,0.20491,0.42707,0.25173,0.236406984082463
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.67101","0.2304",0.50393,0.16271,0.58747,0.21624,0.46135614613281
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"1.22802","0.23879",0.71508,0.44828,0.97155,0.44132,1
"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.24524","0.14067",0.21748,0.09501,0.23136,0.12083,0.574409139104559
"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.25653","0.15647",0.21744,0.10667,0.23699,0.13532,0.593665560762048
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.10265","0.05696",0.13797,0.02159,0.12031,0.04655,0.194582207476827
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.143","0.06843",0.02702,0.03582,0.08501,0.07966,0.0738447857167288
"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.22953","0.02028",0.1358,0.08309,0.18267,0.07651,0.407873584841126
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.0484","0.052",0.07903,0.0754,0.06372,0.06655,0.00102609706878269
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.08293","0.07678",0.05511,0.03795,0.06902,0.06214,0.0191538119506105
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.18345","0.18786",0.17751,0.13348,0.18048,0.16298,0.400383076239012
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.15024","0.12527",0.093,0.10566,0.12162,0.11937,0.199062831343845
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.11791","0.01678",0.07271,0.04972,0.09531,0.04345,0.109074118411602
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.1332","0.08506",0.06669,0.09986,0.09995,0.09854,0.124944419742108
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.08737","0.11095",0.03946,0.09158,0.06342,0.10451,0
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.12261","0.07198",0.18336,0.03999,0.15298,0.06567,0.306324178267264
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.10861","0.11907",0.12807,0.13663,0.11834,0.12852,0.187844170058487
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.0826","0.09144",0.04716,0.02888,0.06488,0.07008,0.00499367240140914
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.18004","0.16851",0.25785,0.09205,0.21895,0.14124,0.531962923692581
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46645","0.09227",0.26357,0.13443,0.35579,0.1547,1
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.16136","0.18463",0.20492,0.08911,0.18314,0.14659,0.409481136915552
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.06269","0.04443",0.06479,0.08043,0.06374,0.06498,0.00109450354003489
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.0996","0.09517",0.1064,0.11316,0.103,0.10461,0.135376406608065
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.14206","0.11834",0.074,0.20584,0.10803,0.1713,0.152580634127988
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.28722","0.09674",0.18579,0.15501,0.23651,0.1388,0.592023805451996
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.15643","0.00544",0.11431,0.09245,0.13537,0.06879,0.246092280329719
"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.14053","0.01972",0.15817,0.03985,0.15111,0.0344,0.591392020815265
"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.07693","0.05958",0.01134,0.07934,0.04413,0.07745,0.359431916738942
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.07727","0.04461",0.19281,0.05065,0.13504,0.07494,0.55654813529922
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.12178","0.04529",0.05406,0.0492,0.08792,0.05816,0.454379878577624
"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.4013","0.31601",0.09973,0.04673,0.30077,0.29583,0.915893321769297
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.24187","0.38409",0.13585,0.14936,0.19643,0.31083,0.689657415437988
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.40995","0.30997",0.1583,0.13341,0.32607,0.28993,0.970750216825672
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.02876","0.06888",0.15137,0.05448,0.09882,0.08609,0.478013876843018
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.08914","0.14993",0.07312,0.10835,0.08113,0.13105,0.439657415437988
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.04478","0.0718",0.01312,0.17319,0.02895,0.13351,0.326517779705117
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.1785","0.28389",0.06796,0.07799,0.13113,0.22728,0.54807025151778
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.02769","0.04956",0.07541,0.06554,0.05155,0.06281,0.375520381613183
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.09349","0.07765",0.10463,0.08116,0.09906,0.07962,0.478534258456201
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.06838","0.07971",0.05395,0.04039,0.06117,0.0636,0.396379011274935
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.43639","0.31586",0.14589,0.11791,0.33956,0.29983,1
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.12133","0.08353",0.25196,0.12111,0.18664,0.12284,0.668430182133565
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.13529","0.06662",0.12782,0.12149,0.13155,0.09805,0.54898091934085
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.15053","0.10597",0.11878,0.19145,0.13465,0.15554,0.555702515177797
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.25629","0.21899",0.14078,0.0667,0.21008,0.18373,0.719254119687771
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.28004","0.29705",0.07121,0.22865,0.19651,0.29038,0.689830875975716
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.0572","0.04868",-0.08802,0.11699,-0.01541,0.11532,0.230333911535126
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"-0.23334","0.14927",-0.00995,0.08179,-0.12164,0.1642,0
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.09713","0.0234",0.1322,0.09448,0.11466,0.07102,0.512359063313096
norm_invasion_scores_sorted.csv deleted 100644 → 0
+ 0
− 139
View file @ 0b113eda
"MAY.Strain..","Species","Soll.Clade","Isolation.Site","MTL.Genotype","Media","Temperature..C.","MJD.Phenotype.Score","MJD.Score.St..Dev.","RJF.Phenotype.Score","RJF.Score.St..Dev.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores"
"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.03817","0.02733",0.02217,0.01603,0.03017,0.02379,0.0169558484245125
"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.04989","0.02389",0.01114,0.00204,0.03439,0.02654,0.0236244113650011
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.04886","0.00972",0.0588,0.01459,0.05383,0.01336,0.0543440472804273
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.01802","0.02114",0.02085,0.02215,0.01944,0.0217,0
"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.03355","0.02283",0.0491,0.0359,0.04132,0.03107,0.034575392686704
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.14195","0.08182",0.11547,0.08178,0.12871,0.08287,0.172671533769476
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.0331","0.00741",0.03436,0.0114,0.03373,0.00964,0.0225814607629342
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.15982","0.08804",0.07127,0.02823,0.11554,0.07896,0.151859928573686
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.02077","0.00909",0.05373,0.04047,0.03725,0.03364,0.0281438639739578
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.02837","0.01308",0.08544,0.10099,0.0569,0.07746,0.0591953478082235
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.38247","0.29736",0.5065,0.47115,0.44449,0.39881,0.671675990012958
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.10975","0.06659",0.08957,0.07167,0.09966,0.06991,0.126765904996682
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.03914","0.04533",0.02354,0.01732,0.03134,0.03519,0.0188047154009039
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.0863","0.09679",0.11996,0.0915,0.10313,0.09568,0.132249296798458
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.03202","0.01924",0.02276,0.0048,0.02739,0.01476,0.0125628140703518
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.035","0.0186",0.02647,0.01219,0.03073,0.01629,0.0178407762080845
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.08479","0.08607",0.05899,0.03141,0.07189,0.06605,0.0828829683006226
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.03552","0.0203",0.01921,0.00289,0.02737,0.01663,0.0125312095066528
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.07652","0.06388",0.05592,0.02566,0.06622,0.04975,0.0739230744919566
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.0844","0.05966",0.06683,0.05509,0.07561,0.05809,0.0887614171486363
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.61161","0.19176",0.69291,0.15635,0.65226,0.17962,1
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.18746","0.20959",0.25806,0.31553,0.22276,0.27017,0.321291994564015
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.10327","0.05274",0.21018,0.06962,0.15672,0.08168,0.216933725229923
"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.02448","0.00746",0.02399,0.00652,0.02423,0.00701,0.0155720693579701
"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.03473","0.00956",0.01771,0.00462,0.02622,0.01135,0.0182365936935128
"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.581","0.09418",0.56779,0.04772,0.57439,0.07495,0.752212626364062
"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.01331","0.00556",0.0187,0.00287,0.01601,0.00518,0.00456584320814086
"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.03704","0.03129",0.01949,0.00864,0.02827,0.02458,0.0209814554462074
"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.07275","0.04506",0.07182,0.06726,0.07229,0.05725,0.079922340496753
"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.07893","0.02843",0.03387,0.01011,0.0564,0.03103,0.0586463145209881
"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.09021","0.04888",0.04174,0.00472,0.06598,0.04234,0.0714735221262636
"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.02903","0.01205",0.02618,0.0139,0.0276,0.01308,0.0200843542880096
"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01867","0.01278",0.05101,0.04916,0.03484,0.03939,0.0297784026243556
"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.43145","0.33746",0.23659,0.21148,0.33402,0.29798,0.43036754368347
"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.01832","0.00821",0.02884,0.01897,0.02358,0.01553,0.0147017473388231
"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.01344","0.0052",0.01703,0.01834,0.01523,0.0136,0.00352145678516436
"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06993","0.07992",0.1406,0.10665,0.10527,0.10065,0.124081140791324
"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.05132","0.02707",0.01624,0.00282,0.03378,0.02604,0.0283591082546696
"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.0157","0.00509",0.00951,0.00289,0.0126,0.00517,0
"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.06724","0.0615",0.14745,0.17078,0.10734,0.13447,0.126852781683069
"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01518","0.00666",0.01649,0.00089,0.01583,0.0048,0.00432483095668474
"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.38843","0.37503",0.21575,0.23362,0.30209,0.32414,0.387614648189061
"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.13366","0.10189",0.221,0.22164,0.17733,0.17793,0.220566378790922
"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.38109","0.17592",0.3918,0.20351,0.38644,0.19029,0.500555667135302
"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.74106","0.08601",0.77784,0.21525,0.75945,0.16494,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.0854","0.00865",0.09276,0.02846,0.08908,0.02135,0.102403427729798
"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.82793","0.12708",0.61876,0.1542,0.72335,0.17579,0.721497940120522
"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.06744","0.04867",0.03685,0.04141,0.05215,0.0477,0.010654183832329
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.59825","0.16603",0.52675,0.00464,0.5625,0.12276,0.551147495843174
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.00625","0.00296",0.06599,0.03845,0.04209,0.0418,0
"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.26736","0.11858",0.23906,0.0644,0.25321,0.09646,0.223589591519015
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09094","0.08502",0.09485,0.08103,0.0929,0.08308,0.053811041801256
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.38957","0.22116",0.14755,0.07015,0.26856,0.20386,0.239846223907311
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.39665","0.29413",0.08097,0.06118,0.23881,0.26465,0.208339069929996
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.31517","0.16455",0.19525,0.11266,0.25521,0.15323,0.22570771951749
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.16614","0.06825",0.1057,0.10104,0.13592,0.09137,0.0993719750484522
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.48708","0.30079",0.49774,0.22524,0.49241,0.26577,0.476917700136619
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.67841","0.31215",0.35775,0.30709,0.51808,0.34868,0.504103872997045
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.35418","0.1657",0.4791,0.10519,0.41664,0.15219,0.396672420914396
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.76282","0.24459",0.57969,0.19947,0.67125,0.24123,0.666320705760249
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.17878","0.10697",0.08416,0.06652,0.13147,0.10086,0.0946591402518454
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.07854","0.03972",0.0704,0.04567,0.07447,0.04299,0.0342924922953094
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.97471","0.03686",0.99599,0.00896,0.98632,0.02782,1
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.99913","0.00123",0.52207,0.16914,0.7606,0.26684,0.760948074092118
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.30174","0.0561",0.40948,0.13845,0.36639,0.12468,0.343454454952713
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.0666","0.04775",0.08923,0.0459,0.07792,0.04818,0.0379462630926787
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.73761","0.09084",0.86549,0.13464,0.80155,0.13144,0.804316744860892
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.92653","0.07311",0.88006,0.05069,0.9033,0.06706,0.912076506783305
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.47941","0.04806",0.44671,0.05691,0.46306,0.05515,0.445834171758999
"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.40171","0.08558",0.48821,0.07159,0.44496,0.08997,0.49933705966463
"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.41642","0.02187",0.2746,0.146,0.34551,0.1262,0.370063694267516
"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.28098","0.04302",0.21823,0.04747,0.24961,0.0551,0.24540491355778
"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.15272","0.11125",0.14363,0.0057,0.14818,0.0789,0.113557779799818
"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.24988","0.037",0.23664,0.06438,0.24194,0.05546,0.235434810867022
"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.26382","0.07863",0.20863,0.14597,0.23622,0.12044,0.227999480046796
"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.2094","0.16055",0.20993,0.09116,0.20972,0.12368,0.193552580267776
"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.24209","0.213",0.06532,0.04082,0.15371,0.177,0.120746132848044
"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.3642","0.08498",0.4672,0.1238,0.4157,0.11801,0.46130248277655
"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.19619","0.05391",0.14958,0.08527,0.17289,0.07504,0.145677888989991
"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.05232","0.03199",0.06933,0.01465,0.06082,0.02629,0
"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.53897","0.08691",0.48224,0.20257,0.5106,0.15842,0.584661380475757
"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.33646","0.14253",0.36342,0.09994,0.34994,0.12383,0.37582217600416
"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.65615","0.05019",0.62589,0.10369,0.64102,0.08285,0.754192122708956
"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.33137","0.06543",0.11373,0.03314,0.22255,0.12055,0.210230079292864
"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.43061","0.00815",0.36724,0.03353,0.39259,0.0408,0.431262186403224
"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.78181","0.09756",0.8426,0.07051,0.8122,0.09038,0.97670609645132
"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.56305","0.0685",0.42333,0.0852,0.49319,0.1042,0.562030417262446
"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.20943","0.11239",0.23981,0.06562,0.22462,0.09327,0.212920837124659
"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.82561","0.16137",0.83463,0.0373,0.83012,0.1172,1
"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.59941","0.28423",0.59199,0.18482,0.5957,0.23976,0.69528142467178
"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.65525","0.03979",0.61975,0.0301,0.6375,0.03949,0.749616534511894
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.43027","0.05191",0.36889,0.06242,0.39958,0.06509,0.440348368646822
"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.78618","0.01644",0.73301,0.06967,0.7596,0.05717,0.729699341114035
"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.26531","0.06375",0.245,0.03492,0.25515,0.05239,0.162506465177989
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.49648","0.04984",0.43892,0.08436,0.4677,0.07502,0.401493175020801
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.09882","0.06738",0.12243,0.04562,0.11062,0.05873,0
"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.67327","0.10005",0.65267,0.04901,0.66297,0.07945,0.621050619532708
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.3699","0.06271",0.24104,0.14096,0.30547,0.1267,0.219085205424003
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.33445","0.07006",0.51052,0.05803,0.42248,0.10903,0.350648766556478
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.45832","0.13866",0.242,0.16268,0.35016,0.18586,0.269333693134543
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.27806","0.07975",0.19083,0.09499,0.23444,0.09795,0.139220580629202
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.46581","0.11926",0.50242,0.14036,0.48412,0.13152,0.419955474600283
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.51701","0.03141",0.42434,0.14905,0.47068,0.11725,0.404843823787357
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.5149","0.37242",0.42545,0.28168,0.47018,0.3332,0.404281634396996
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.68989","0.13151",0.7232,0.1498,0.70655,0.14193,0.670051046796645
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.61974","0.05117",0.42325,0.20437,0.52149,0.17845,0.461973509635926
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.25119","0.01975",0.38456,0.06049,0.31787,0.08044,0.233027502304976
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46279","0.0582",0.26596,0.09603,0.36437,0.12645,0.285311115608626
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"1.0","0.0",0.98663,0.0299,0.99271,0.02307,0.991803278688525
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.87304","0.06833",0.72027,0.06147,0.79665,0.10029,0.771357574939846
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.43189","0.09024",0.42998,0.08187,0.43094,0.08616,0.3601610110414
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.46065","0.26402",0.36627,0.22954,0.41346,0.25184,0.34050686995435
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.49668","0.11005",0.64057,0.31092,0.56862,0.24406,0.514965481571432
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"1.0","0.0",1,0,1,0,1
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.71322","0.05879",0.52849,0.0471,0.62085,0.10662,0.573691785288628
"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.68093","0.01071",0.61408,0.02662,0.64082,0.03929,0.6356663585841
"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.10936","0.06266",0.11311,0.03415,0.11124,0.05049,0
"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.52249","0.05964",0.48237,0.11294,0.50243,0.09252,0.469553840429235
"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.49733","0.022",0.11014,0.04516,0.30373,0.19683,0.23104992137893
"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.67622","0.064",0.72153,0.02386,0.69887,0.05334,0.705345032468702
"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.55893","0.06283",0.30529,0.13371,0.42058,0.16582,0.371307510412791
"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.42005","0.05842",0.40877,0.08216,0.41441,0.07151,0.363901525608863
"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.2383","0.22991",0.3949,0.11151,0.3166,0.19692,0.246498061480477
"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.36433","0.14421",0.25377,0.08006,0.30905,0.12907,0.237435632749577
"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.49469","0.07462",0.40608,0.15895,0.45039,0.13183,0.407089099878768
"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.64694","0.12155",0.5825,0.10295,0.61472,0.11715,0.60433796257397
"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.44121","0.26979",0.36421,0.22243,0.40271,0.25023,0.349857761880184
"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.62849","0.03307",0.6783,0.12799,0.6534,0.09674,0.650766405396646
"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.45649","0.08838",0.32538,0.23858,0.39094,0.19148,0.33572997563347
"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.48191","0.0287",0.48663,0.04877,0.48427,0.04008,0.447755998607627
"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.40027","0.02888",0.22052,0.05256,0.31039,0.09938,0.239044063809101
"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.98119","0.01927",0.9075,0.07531,0.94435,0.06617,1
"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.72383","0.0552",0.56955,0.07314,0.64669,0.10074,0.642712246882164
"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.22056","0.1053",0.13292,0.07596,0.17674,0.10173,0.0786210704468798
"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.88483","0.11788",0.82153,0.1236,0.85318,0.12485,0.890566671868061
"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.37129","0.08841",0.3182,0.09442,0.34233,0.09547,0.277382338466709
"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.9248","0.01514",0.82914,0.12286,0.87697,0.09975,0.919122324783042
"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.56838","0.05006",0.35209,0.05282,0.46024,0.11976,0.418912268487955
score_wrangler.R deleted 100644 → 0
+ 0
− 104
View file @ 0b113eda
library( "caret" )
setwd("./")
assays = c( "adhesion", "filamentation", "invasion", "biofilm" )
media = c( "LEE", "SPI", "YPD" )
temps = c( "30", "37" )
# assays = c( "adhesion" )
# media = c( "LEE" )
# temps = c( "30" )
for ( assay in assays ){
file_name <- paste0(assay, "_scores_sorted.csv")
new_file_name <- paste0( "norm_", file_name )
if (file.exists(new_file_name)){
system( paste0("rm ", new_file_name))
}
data <- data.frame(read.csv( file_name ))
data <- data[ data$Species == "Candida albicans", ]
exclude <- c( "SC5314 X SC5314 Tetraploid", "D. hansenii", "C. glabrata", "C. lusitaniae", "P94015 w/ Additional SC5314 EFG1 Allele #1", "P94015 w/ Additional SC5314 EFG1 Allele #2", "P94015 w/ SC5314 EFG1 Allele(s) Only" ) # Species and/or strains to be excluded from data
for ( bad_strains in exclude ) {
data <- data[ data$MAY.Strain.. != bad_strains, ]
}
headers <- c(colnames( data ), "Normalized.Scores")
for ( medium in media ){
med_data <- data[data$Media == medium, ]
for ( temp in temps ){
temp_med_data <- med_data[ med_data$Temperature..C. == temp, ]
length <- ncol(temp_med_data)
usable <- as.data.frame(temp_med_data$Total.Average.Phenotype.Score)
temporary <- preProcess(usable, method=c("range"))
temp_med_data[,ncol(temp_med_data)+1] <- predict( temporary, usable )
colnames(temp_med_data) <- headers # Add the nice new headers (I'm gonna change them in the python program anyways, but I've already added this)
write.table( temp_med_data, new_file_name, sep = ",", col.names = !file.exists(new_file_name), row.names = FALSE, append = T )
}
}
system( paste0("python3 column_clean.py ", new_file_name))
}
#Make the new data frame to make the new file
adh_df <- as.data.frame(read.csv("nc_adhesion_scores_sorted.csv"))
fil_df <- as.data.frame(read.csv("nc_filamentation_scores_sorted.csv"))
inv_df <- as.data.frame(read.csv("nc_invasion_scores_sorted.csv"))
bio_df <- as.data.frame(read.csv("nc_biofilm_scores_sorted.csv"))
sortables <- c( "adh", "fil", "inv", "bio" )
adh_sorted <- adh_df[ order( adh_df[,6], adh_df[,7], adh_df[,1] ), ]
fil_sorted <- fil_df[ order( fil_df[,6], fil_df[,7], fil_df[,1] ), ]
inv_sorted <- inv_df[ order( inv_df[,6], inv_df[,7], inv_df[,1] ), ]
bio_sorted <- bio_df[ order( bio_df[,5], bio_df[,6], bio_df[,1] ), ]
big_df <- adh_sorted[,c(1:7)] # Start the new df
big_df$Adhesion <- adh_sorted$Total.Average.Phenotype.Score
big_df$Adhesion.stdev <- adh_sorted$Total.Phenotype.Score.St..Dev.
big_df$Adhesion.norm <- adh_sorted$Normalized.Scores
big_df$Filamentation <- fil_sorted$Total.Average.Phenotype.Score
big_df$Filamentation.stdev <- fil_sorted$Total.Phenotype.Score.St..Dev.
big_df$Filamentation.norm <- fil_sorted$Normalized.Scores
big_df$Invasion <- inv_sorted$Total.Average.Phenotype.Score
big_df$Invasion.stdev <- inv_sorted$Total.Phenotype.Score.St..Dev.
big_df$Invasion.norm <- inv_sorted$Normalized.Scores
big_df$Biofilm <- bio_sorted$Total.Average.Phenotype.Score
big_df$Biofilm.stdev <- bio_sorted$Total.Phenotype.Score.St..Dev.
big_df$Biofilm.norm <- bio_sorted$Normalized.Scores
# New file
write.csv( big_df, "compiled_data.csv", row.names = FALSE )
big_df$adh_fil <- big_df$Adhesion.norm + big_df$Filamentation.norm
big_df$adh_inv <- big_df$Adhesion.norm + big_df$Invasion.norm
big_df$fil_inv <- big_df$Filamentation.norm + big_df$Invasion.norm
big_df$all_sum <- big_df$Adhesion.norm + big_df$Filamentation.norm + big_df$Invasion.norm
write.csv( big_df, "compiled_and_combination_scores_data.csv", row.names = FALSE )
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