diff --git a/compiled_data.csv b/compiled_data.csv deleted file mode 100644 index 74aac2b0dc007e6bf45b186f4a12f3bfe35171e9..0000000000000000000000000000000000000000 --- a/compiled_data.csv +++ /dev/null @@ -1,139 +0,0 @@ -"May.Strain","Species","Soll.Clade","Isolation.Site","MTL.Genotype","Media","Temperature...C.","Adhesion","Adhesion.stdev","Adhesion.norm","Filamentation","Filamentation.stdev","Filamentation.norm","Invasion","Invasion.stdev","Invasion.norm","Biofilm","Biofilm.stdev","Biofilm.norm" -"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,0.36248,0.08383,0.370045797093798,-0.06476,0.03731,0.836297385839406,0.03017,0.02379,0.0169558484245125,0.095333333,0.020572365,0.313043477483122 -"19F","Candida albicans","I","Vagina","α/α","LEE",30,0.20222,0.07498,0.158534492998456,-0.05067,0.04932,0.883399077355085,0.03439,0.02654,0.0236244113650011,0.116333333,0.03058322,0.469565216224683 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,0.14239,0.04004,0.0795708007232509,-0.04269,0.05638,0.910075549909741,0.05383,0.01336,0.0543440472804273,0.172138889,0.029546325,0.885507247489423 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,0.27783,0.07567,0.258324644643588,-0.31493,0.21307,0,0.01944,0.0217,0,0.142,0.022211108,0.660869566059951 -"L26","Candida albicans","I","Vagina","a/a","LEE",30,0.15783,0.04631,0.0999485277620135,-0.22853,0.31397,0.288827973524102,0.04132,0.03107,0.034575392686704,0.092666667,0.021644219,0.293167706103931 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,0.20847,0.09517,0.166783249086038,-0.16624,0.23785,0.497058233602995,0.12871,0.08287,0.172671533769476,0.1875,0.013313527,1 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,0.16258,0.10694,0.106217582388576,-0.16304,0.27971,0.50775556595574,0.03373,0.00964,0.0225814607629342,0.094333333,0.013421583,0.305590061352571 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,0.27102,0.09674,0.249336800010558,-0.05264,0.04589,0.876813532125426,0.11554,0.07896,0.151859928573686,0.102166667,0.004633813,0.363975159344161 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,0.15387,0.05458,0.0947221159049215,-0.1054,0.24658,0.700441264959551,0.03725,0.03364,0.0281438639739578,0.08,0.014302292,0.198757765965819 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,0.16213,0.08544,0.10562367195027,-0.17594,0.29585,0.464631944908738,0.0569,0.07746,0.0591953478082235,0.122666667,0.01060922,0.516770190020447 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,0.35111,0.24671,0.355039660019269,-0.13332,0.18254,0.607107040181855,0.44449,0.39881,0.671675990012958,0.142833333,0.03977611,0.667080743684271 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,0.19862,0.06585,0.153783209492009,-0.09317,0.05835,0.741325132045196,0.09966,0.06991,0.126765904996682,0.130333333,0.023534844,0.57391304205239 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,0.19022,0.08123,0.142696881310298,-0.1089,0.0466,0.688741057698736,0.03134,0.03519,0.0188047154009039,0.100833333,0.028121265,0.35403726620115 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,0.24446,0.0934,0.21428288614077,-0.13913,0.0915,0.587684696128903,0.10313,0.09568,0.132249296798458,0.134166667,0.013973189,0.602484475521778 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,0.19594,0.04269,0.150246142881653,-0.02053,0.06719,0.984154576452497,0.02739,0.01476,0.0125628140703518,0.097833333,0.028726681,0.331677017809498 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,0.34747,0.09295,0.350235584473861,-0.01579,0.06096,1,0.03073,0.01629,0.0178407762080845,0.099166667,0.022549329,0.34161491095251 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,0.0821,0.06991,0,-0.0773,0.08447,0.794377214682089,0.07189,0.06605,0.0828829683006226,0.0745,0.026060293,0.157763977247791 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,0.21441,0.10532,0.174622866871676,-0.04696,0.05182,0.895801297051548,0.02737,0.01663,0.0125312095066528,0.1085,0.025751483,0.411180125686509 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,0.18085,0.06654,0.130330346183795,-0.11905,0.1773,0.654810456642375,0.06622,0.04975,0.0739230744919566,0.130666667,0.009546669,0.576397519064851 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,0.19858,0.1002,0.153730417453048,-0.14681,0.2141,0.562011098482316,0.07561,0.05809,0.0887614171486363,0.1075,0.013503086,0.403726709555958 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,0.83979,0.204,1,-0.19668,0.28129,0.395299859597513,0.65226,0.17962,1,0.053333333,0.006497863,0 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,0.28561,0.14838,0.26859269622141,-0.05053,0.07442,0.883867085645517,0.22276,0.27017,0.321291994564015,0.136166667,0.015614274,0.617391307782879 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,0.08918,0.03007,0.00934419089601287,-0.15025,0.29778,0.550511466203116,0.15672,0.08168,0.216933725229923,0.085166667,0.022086321,0.237267085124802 -"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,0.18537,0.1138,0.163377244386105,-0.39408,0.28885,0.234671065483038,0.02423,0.00701,0.0155720693579701,0.070166667,0.007717225,0.3673647486911 -"19F","Candida albicans","I","Vagina","α/α","LEE",37,0.17677,0.12387,0.153298016970606,-0.17988,0.16428,0.699585440496603,0.02622,0.01135,0.0182365936935128,0.0315,0.035251478,0.164921465968586 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,0.34866,0.0487,0.354753644929914,-0.11282,0.07591,0.845137065092353,0.57439,0.07495,0.752212626364062,0.029566667,0.004127953,0.154799303664921 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,0.07013,0.03555,0.0283155970184239,-0.21664,0.17035,0.619799014607254,0.01601,0.00518,0.00456584320814086,0.036,0.019735051,0.18848167539267 -"L26","Candida albicans","I","Vagina","a/a","LEE",37,0.08209,0.06228,0.042332755145094,-0.5022,0.33951,0,0.02827,0.02458,0.0209814554462074,0.0385,0.010011105,0.201570680628272 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,0.1497,0.09202,0.121571890675543,-0.32043,0.29769,0.394526078180279,0.07229,0.05725,0.079922340496753,0.067833333,0.009994443,0.355148340314136 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,0.08141,0.05043,0.0415357929773569,-0.04147,0.06316,1,0.0564,0.03103,0.0586463145209881,0.043,0.009788031,0.225130890052356 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,0.53765,0.26423,0.576250527401434,-0.10374,0.17248,0.864844920018232,0.06598,0.04234,0.0714735221262636,0.116166667,0.089786166,0.608202445026178 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,0.07777,0.04405,0.0372697013735877,-0.12441,0.18773,0.819981333970004,0.0276,0.01308,0.0200843542880096,0.032666667,0.007371115,0.171029670157068 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,0.06537,0.04399,0.0227368618442642,-0.08861,0.09721,0.897684109999349,0.03484,0.03939,0.0297784026243556,0.0255,0.008205689,0.133507853403141 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,0.15601,0.08742,0.128967230790868,-0.31759,0.28587,0.400690209016127,0.33402,0.29798,0.43036754368347,0.093166667,0.01338739,0.487783596858639 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,0.10746,0.05922,0.0720664760208148,-0.10337,0.06428,0.865647993401775,0.02358,0.01553,0.0147017473388231,0.093,0.056799844,0.486910994764398 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,0.08306,0.05679,0.0434695982373072,-0.1244,0.0879,0.820003038656046,0.01523,0.0136,0.00352145678516436,0.0405,0.009616248,0.212041884816754 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,0.07666,0.03864,0.0359687778350757,-0.07304,0.05621,0.931478306166301,0.10527,0.10065,0.124081140791324,0.054166667,0.025584826,0.283595115183246 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,0.124,0.0676,0.0914514087478318,-0.26416,0.31946,0.516658346537017,0.03378,0.02604,0.0283591082546696,0.031333333,0.010563301,0.164048863874346 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,0.09882,0.05762,0.0619403684778023,-0.19203,0.11517,0.673214246955918,0.0126,0.00517,0,0.087833333,0.047346242,0.459860382198953 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,0.04597,0.04291,0,-0.10744,0.09255,0.856814186182797,0.10734,0.13447,0.126852781683069,0,0.015227898,0 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,0.0856,0.02825,0.0464464863344428,-0.09704,0.0282,0.879387059666182,0.01583,0.0048,0.00432483095668474,0.066833333,0.017062793,0.349912738219895 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,0.22588,0.21394,0.210855093525854,-0.20542,0.1273,0.64415167234606,0.30209,0.32414,0.387614648189061,0.038666667,0.007289643,0.202443282722513 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,0.16386,0.15684,0.13816745581548,-0.17491,0.16107,0.710372669459336,0.17733,0.17793,0.220566378790922,0.033666667,0.007559027,0.176265272251309 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,0.89921,0.1619,1,-0.17423,0.22793,0.711848588110173,0.38644,0.19029,0.500555667135302,0.069666667,0.007243771,0.364746947643979 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,0.48713,0.20948,0.51704092635132,-0.09857,0.05007,0.876066242701799,0.75945,0.16494,1,0.191,0.035179303,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,0.10041,0.06213,0.0638038535464816,-0.36724,0.28513,0.292926442819005,0.08908,0.02135,0.102403427729798,0.027,0.012212243,0.141361256544503 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,0.0982,0.08047,0.0690805864677548,0.32242,0.14801,0.0865159461569008,0.72335,0.17579,0.721497940120522,0.201,0.017663522,0.666471278624234 -"19F","Candida albicans","I","Vagina","α/α","SPI",30,0.10524,0.07954,0.0797106920138312,0.30781,0.04173,0.0765127966368603,0.05215,0.0477,0.010654183832329,0.288833333,0.108809849,0.975381008177469 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,0.16263,0.08362,0.166367191628792,0.5576,0.32184,0.247538581620497,0.5625,0.12276,0.551147495843174,0.228333333,0.020055479,0.762602578854165 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,0.09103,0.06041,0.0582541863590379,0.2877,0.08979,0.0627439166335739,0.04209,0.0418,0,0.191666667,0.02208066,0.633645957366525 -"L26","Candida albicans","I","Vagina","a/a","SPI",30,0.05245,0.02595,0,0.23279,0.06747,0.0251482328453859,0.25321,0.09646,0.223589591519015,0.240166667,0.011728408,0.804220400708348 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,0.09708,0.06283,0.0673894333126972,0.29598,0.12411,0.0684130527065332,0.0929,0.08308,0.053811041801256,0.2645,0.018282505,0.889800704442908 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,0.09069,0.06442,0.057740800579824,0.20884,0.05177,0.00875018828652415,0.26856,0.20386,0.239846223907311,0.271833333,0.012432037,0.915592028037036 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,0.1607,0.12012,0.163452972352666,0.31635,0.16365,0.0823599490599367,0.23881,0.26465,0.208339069929996,0.193,0.018015425,0.638335287969912 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,0.2071,0.10569,0.233515031633624,0.21387,0.05646,0.01219411998302,0.25521,0.15323,0.22570771951749,0.233166667,0.018697148,0.779601408885816 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,0.09403,0.05681,0.0627840608815136,0.28936,0.20889,0.0638804825612445,0.13592,0.09137,0.0993719750484522,0.243166667,0.011710631,0.814771397203718 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,0.19927,0.2408,0.221692059129962,0.2285,0.08998,0.0222109630684541,0.49241,0.26577,0.476917700136619,0.224166667,0.099432417,0.747948419399705 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,0.11701,0.10209,0.0974828997236777,0.35206,0.27185,0.106809810070248,0.51808,0.34868,0.504103872997045,0.200666667,0.012569805,0.665298946852637 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,0.1753,0.13175,0.185498361695381,0.34071,0.26432,0.0990387117093678,0.41664,0.15219,0.396672420914396,0.251,0.129727492,0.842321220213741 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,0.19944,0.07057,0.221948752019569,0.28122,0.12031,0.0583072014460405,0.67125,0.24123,0.666320705760249,0.187333333,0.014161764,0.618405626750769 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,0.07629,0.04794,0.0359974028719404,0.23992,0.06287,0.030029988908212,0.13147,0.10086,0.0946591402518454,0.2305,0.118026833,0.770222744162043 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,0.10136,0.06157,0.073852054298096,0.22086,0.11484,0.0169800210880907,0.07447,0.04299,0.0342924922953094,0.185166667,0.023723523,0.610785464959889 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,0.58777,0.32092,0.808310809790569,1.6566,0.86369,1,0.98632,0.02782,1,0.229,0.090368997,0.764947245914358 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,0.15975,0.12387,0.162018512087215,0.43716,0.1121,0.165075930820108,0.7606,0.26684,0.760948074092118,0.263666667,0.015362291,0.886869873255416 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,0.16181,0.14103,0.165129025925982,0.26257,0.10609,0.0455379517164884,0.36639,0.12468,0.343454454952713,0.227,0.010657548,0.757913248250778 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,0.08316,0.05835,0.0463708155284099,0.19606,0.04941,0,0.07792,0.04818,0.0379462630926787,0.198333333,0.018568941,0.65709261390046 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,0.47403,0.30007,0.636568167061772,0.98475,0.49841,0.539998904514769,0.80155,0.13144,0.804316744860892,0.0115,0.003947573,0 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,0.71472,0.19872,1,0.51027,0.14905,0.215132759116491,0.9033,0.06706,0.912076506783305,0.295833333,0.01332604,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,0.09083,0.02724,0.0579521947242061,0.90116,0.81838,0.482766647952127,0.46306,0.05515,0.445834171758999,0.182333333,0.038016078,0.600820632591818 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,0.16729,0.06647,0.177445193004016,0.42637,0.30168,0.235425285744338,0.44496,0.08997,0.49933705966463,0.091333333,0.009358597,0.166666665829146 -"19F","Candida albicans","I","Vagina","α/α","SPI",37,0.10546,0.07337,0.109603019596656,0.34263,0.11059,0.117986115980646,0.34551,0.1262,0.370063694267516,0.158166667,0.156771242,0.33458961557789 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,0.07115,0.04939,0.0719568127455068,0.53103,0.22386,0.382203211555992,0.24961,0.0551,0.24540491355778,0.047,0.017198999,0.0552763819095477 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,0.09984,0.04517,0.10343654677522,0.29082,0.08333,0.0453264146974266,0.14818,0.0789,0.113557779799818,0.1405,0.044180187,0.290201005025126 -"L26","Candida albicans","I","Vagina","a/a","SPI",37,0.00557,0.00548,0,0.34302,0.20355,0.118533062197602,0.24194,0.05546,0.235434810867022,0.189666667,0.084082136,0.413735344221106 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,0.12716,0.08492,0.133413065900064,0.37123,0.17569,0.158095505224038,0.23622,0.12044,0.227999480046796,0.099666667,0.012829004,0.187604690954774 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,0.01414,0.01078,0.00940332243411091,0.27542,0.10378,0.0237290512586775,0.20972,0.12368,0.193552580267776,0.140166667,0.016079663,0.289363484924623 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,0.05014,0.03619,0.0489038600803178,0.52622,0.22336,0.375457541546876,0.15371,0.177,0.120746132848044,0.025,0.028732966,0 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,0.07807,0.04203,0.0795496938708332,0.2585,0.06691,0,0.4157,0.11801,0.46130248277655,0.081333333,0.017240134,0.141541037688442 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,0.1025,0.08804,0.106355197612412,0.3359,0.16746,0.108547787672674,0.17289,0.07504,0.145677888989991,0.2765,0.062311048,0.631909547738694 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,0.03617,0.08346,0.0335754569992758,0.37518,0.18072,0.163635088703457,0.06082,0.02629,0,0.149166667,0.081202764,0.311976550251256 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,0.32415,0.28812,0.349557813425794,0.36074,0.11701,0.143384054414136,0.5106,0.15842,0.584661380475757,0.262,0.128355842,0.595477386934673 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,0.12209,0.07309,0.12785007351489,0.3051,0.08911,0.0653530607951756,0.34994,0.12383,0.37582217600416,0.309833333,0.112417995,0.715661640703518 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,0.13642,0.0905,0.143573481972394,0.36784,0.15372,0.153341280415118,0.64102,0.08285,0.754192122708956,0.1315,0.052787046,0.267587939698493 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,0.05907,0.0417,0.0587021878908907,0.29274,0.08695,0.0480190729962836,0.22255,0.12055,0.210230079292864,0.127333333,0.049466319,0.257118927135678 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,0.05388,0.03929,0.0530075270468959,0.36338,0.20776,0.147086459575065,0.39259,0.0408,0.431262186403224,0.1255,0.041322579,0.25251256281407 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,0.15934,0.12829,0.168722157607145,0.43094,0.12353,0.241834373466096,0.8122,0.09038,0.97670609645132,0.252666667,0.080844329,0.572026801507538 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,0.0949,0.09499,0.0980161952204349,0.33901,0.08645,0.112909333146343,0.49319,0.1042,0.562030417262446,0.265666667,0.060271607,0.604690118090452 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,0.10154,0.09521,0.105301849941846,0.2672,0.0732,0.0122011079166959,0.22462,0.09327,0.212920837124659,0.0675,0.009706813,0.10678391959799 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,0.38003,0.32148,0.410871425749961,0.78521,0.30508,0.738671902391137,0.83012,0.1172,1,0.423,0.023212185,1 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,0.36477,0.18145,0.394127586736597,0.42707,0.25173,0.236406984082463,0.5957,0.23976,0.69528142467178,0.033833333,0.008698659,0.0221943040201005 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,0.91695,0.11797,1,0.58747,0.21624,0.46135614613281,0.6375,0.03949,0.749616534511894,0.2955,0.018147543,0.67964824120603 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,0.15499,0.06008,0.163949175974895,0.97155,0.44132,1,0.39958,0.06509,0.440348368646822,0.080833333,0.038594761,0.140284756281407 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,0.47895,0.10898,0.0281911738154806,0.23136,0.12083,0.574409139104559,0.7596,0.05717,0.729699341114035,0.687833333,0.051020965,0.64463579208251 -"19F","Candida albicans","I","Vagina","α/α","YPD",30,0.47272,0.10506,0.0121224626653942,0.23699,0.13532,0.593665560762048,0.25515,0.05239,0.162506465177989,0.552333333,0.026159766,0.455434023230565 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,0.6407,0.06675,0.445384436821336,0.12031,0.04655,0.194582207476827,0.4677,0.07502,0.401493175020801,0.525833333,0.121769477,0.41843146327059 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,0.56731,0.10903,0.256093471924892,0.08501,0.07966,0.0738447857167288,0.11062,0.05873,0,0.382666667,0.021959559,0.218524552216453 -"L26","Candida albicans","I","Vagina","a/a","YPD",30,0.57788,0.10689,0.283356116685151,0.18267,0.07651,0.407873584841126,0.66297,0.07945,0.621050619532708,0.578,0.052860666,0.491272981141515 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,0.59963,0.18044,0.339454747104795,0.06372,0.06655,0.00102609706878269,0.30547,0.1267,0.219085205424003,0.4895,0.046867722,0.367698394105374 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,0.79728,0.19194,0.849242990895257,0.06902,0.06214,0.0191538119506105,0.42248,0.10903,0.350648766556478,0.825666667,0.018649546,0.837095648905837 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,0.73641,0.1988,0.692244203141523,0.18048,0.16298,0.400383076239012,0.35016,0.18586,0.269333693134543,0.525666667,0.050334437,0.418198743698579 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,0.55519,0.13336,0.224832993732429,0.12162,0.11937,0.199062831343845,0.23444,0.09795,0.139220580629202,0.761166667,0.03512715,0.747032814286277 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,0.51045,0.09946,0.109437466147378,0.09531,0.04345,0.109074118411602,0.48412,0.13152,0.419955474600283,0.384833333,0.014314911,0.221549917823179 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,0.61028,0.15418,0.366923731655103,0.09995,0.09854,0.124944419742108,0.47068,0.11725,0.404843823787357,0.522666667,0.051629019,0.414009774646507 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,0.53121,0.06501,0.162982641665162,0.06342,0.10451,0,0.47018,0.3332,0.404281634396996,0.312,0.133677057,0.119851058524413 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,0.48822,0.11393,0.052100796987439,0.15298,0.06567,0.306324178267264,0.70655,0.14193,0.670051046796645,0.549,0.043755635,0.450779613638147 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,0.52052,0.1131,0.135410487219829,0.11834,0.12852,0.187844170058487,0.52149,0.17845,0.461973509635926,0.3835,0.076235199,0.219688154265477 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,0.62018,0.14794,0.392458280673699,0.06488,0.07008,0.00499367240140914,0.31787,0.08044,0.233027502304976,0.481333333,0.018397615,0.35629508899818 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,0.46802,0.25603,0,0.21895,0.14124,0.531962923692581,0.36437,0.12645,0.285311115608626,0.585333333,0.059951833,0.501512682803363 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,0.49499,0.08823,0.069562301720358,0.35579,0.1547,1,0.99271,0.02307,0.991803278688525,0.547666667,0.272198253,0.448917850080445 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,0.4811,0.10026,0.0337365556730547,0.18314,0.14659,0.409481136915552,0.79665,0.10029,0.771357574939846,0.616333333,0.050002222,0.544798696341446 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,0.56276,0.13242,0.244357896365841,0.06374,0.06498,0.00109450354003489,0.43094,0.08616,0.3601610110414,0.7795,0.022375582,0.772632069139057 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,0.58081,0.15031,0.290913311495706,0.103,0.10461,0.135376406608065,0.41346,0.25184,0.34050686995435,0.555833333,0.046129046,0.460321153791316 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,0.85573,0.16004,1,0.10803,0.1713,0.152580634127988,0.56862,0.24406,0.514965481571432,0.226166667,0.022637849,0 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,0.50681,0.11883,0.100049005700137,0.23651,0.1388,0.592023805451996,1,0,1,0.942333333,0.112602546,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,0.72074,0.13305,0.651827396765624,0.13537,0.06879,0.246092280329719,0.62085,0.10662,0.573691785288628,0.3555,0.085379057,0.180591109779466 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,0.48142,0.11837,0.189534327489029,0.15111,0.0344,0.591392020815265,0.64082,0.03929,0.6356663585841,0.311,0.041115353,0.235687168109339 -"19F","Candida albicans","I","Vagina","α/α","YPD",37,0.51856,0.11322,0.266778977142738,0.04413,0.07745,0.359431916738942,0.11124,0.05049,0,0.527,0.176534935,0.432498102050114 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,0.72085,0.16754,0.687506499448847,0.13504,0.07494,0.55654813529922,0.50243,0.09252,0.469553840429235,0.222833333,0.025597309,0.155353075170843 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,0.49024,0.08315,0.207878371914062,0.08792,0.05816,0.454379878577624,0.30373,0.19683,0.23104992137893,0.739,0.154473748,0.625664389066059 -"L26","Candida albicans","I","Vagina","a/a","YPD",37,0.57127,0.10763,0.376406480730434,0.30077,0.29583,0.915893321769297,0.69887,0.05334,0.705345032468702,0.200166667,0.004818944,0.134700076537585 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,0.57366,0.16839,0.381377259208419,0.19643,0.31083,0.689657415437988,0.42058,0.16582,0.371307510412791,0.186833333,0.046366894,0.12255125284738 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,0.51342,0.03323,0.256088683679624,0.32607,0.28993,0.970750216825672,0.41441,0.07151,0.363901525608863,0.476833333,0.064052062,0.386788154897494 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,0.51091,0.14236,0.250868326365924,0.09882,0.08609,0.478013876843018,0.3166,0.19692,0.246498061480477,0.092833333,0.039630235,0.0369020501138952 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,0.40301,0.0926,0.0264553565857614,0.08113,0.13105,0.439657415437988,0.30905,0.12907,0.237435632749577,0.556833333,0.214545579,0.459681093394078 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,0.45593,0.06632,0.136519623135958,0.02895,0.13351,0.326517779705117,0.45039,0.13183,0.407089099878768,0.442,0.199082688,0.355049354897494 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,0.50022,0.16169,0.228635011751003,0.13113,0.22728,0.54807025151778,0.61472,0.11715,0.60433796257397,0.999,0.15214622,0.862566439179955 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,0.52816,0.1786,0.286745283999917,0.05155,0.06281,0.375520381613183,0.40271,0.25023,0.349857761880184,0.834,0.229289967,0.712224753530752 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,0.48242,0.1616,0.191614151119985,0.09906,0.07962,0.478534258456201,0.6534,0.09674,0.650766405396646,0.148666667,0.063838337,0.08777524738041 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,0.48678,0.11412,0.200682182150954,0.06117,0.0636,0.396379011274935,0.39094,0.19148,0.33572997563347,0.055333333,0.025249862,0.00273348519362186 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,0.41584,0.12221,0.0531394937709282,0.33956,0.29983,1,0.48427,0.04008,0.447755998607627,0.230666667,0.085450603,0.162490509339408 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,0.39029,0.15701,0,0.18664,0.12284,0.668430182133565,0.31039,0.09938,0.239044063809101,1.149833333,0.061313403,1 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,0.45328,0.09506,0.131008090513924,0.13155,0.09805,0.54898091934085,0.94435,0.06617,1,0.515833333,0.261253176,0.422323462414579 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,0.45876,0.1586,0.142405524011564,0.13465,0.15554,0.555702515177797,0.64669,0.10074,0.642712246882164,0.330333333,0.219723817,0.253302961275626 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,0.55617,0.1529,0.345001143902997,0.21008,0.18373,0.719254119687771,0.17674,0.10173,0.0786210704468798,0.285666667,0.064599837,0.212604404555809 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,0.48788,0.17278,0.202969988145005,0.19651,0.29038,0.689830875975716,0.85318,0.12485,0.890566671868061,0.125333333,0.067227846,0.0665148063781321 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,0.8711,0.12942,1,-0.01541,0.11532,0.230333911535126,0.34233,0.09547,0.277382338466709,0.052333333,0.007932003,0 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,0.48706,0.30111,0.201264532767621,-0.12164,0.1642,0,0.87697,0.09975,0.919122324783042,1.090166667,0.034047353,0.945634017312073 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,0.66316,0.13471,0.56752147417899,0.11466,0.07102,0.512359063313096,0.46024,0.11976,0.418912268487955,0.178166667,0.123078566,0.114654518451025 diff --git a/filamentation_scores_sorted.csv b/filamentation_scores_sorted.csv deleted file mode 100644 index 5d223aed47cb7e79b868d92da5e590ad5cdde274..0000000000000000000000000000000000000000 --- a/filamentation_scores_sorted.csv +++ /dev/null @@ -1,200 +0,0 @@ -MAY Strain #,Species,Soll Clade,Isolation Site, MTL Genotype, Media,Temperature(°C),MJD Phenotype Score,MJD Score St. Dev.,RJF Phenotype Score,RJF Score St. Dev.,Total Average Phenotype Score,Total Phenotype Score St. Dev. -12C,Candida albicans,I,Oral cavity,a/a,SPI,30,0.2469,0.01296,0.39794,0.17955,0.32242,0.14801 -12C,Candida albicans,I,Oral cavity,a/a,YPD,37,0.14053,0.01972,0.15817,0.03985,0.15111,0.0344 -12C,Candida albicans,I,Oral cavity,a/a,LEE,37,-0.27621,0.27175,-0.51195,0.25542,-0.39408,0.28885 -12C,Candida albicans,I,Oral cavity,a/a,YPD,30,0.24524,0.14067,0.21748,0.09501,0.23136,0.12083 -12C,Candida albicans,I,Oral cavity,a/a,LEE,30,-0.04099,0.04034,-0.08852,0.00525,-0.06476,0.03731 -12C,Candida albicans,I,Oral cavity,a/a,SPI,37,0.36402,0.11843,0.46793,0.3715,0.42637,0.30168 -19F,Candida albicans,I,Vagina,α/α,LEE,30,-0.03515,0.0075,-0.06619,0.06579,-0.05067,0.04932 -19F,Candida albicans,I,Vagina,α/α,SPI,30,0.32672,0.0526,0.2889,0.00079,0.30781,0.04173 -19F,Candida albicans,I,Vagina,α/α,SPI,37,0.36736,0.15235,0.3179,0.00507,0.34263,0.11059 -19F,Candida albicans,I,Vagina,α/α,YPD,30,0.25653,0.15647,0.21744,0.10667,0.23699,0.13532 -19F,Candida albicans,I,Vagina,α/α,YPD,37,0.07693,0.05958,0.01134,0.07934,0.04413,0.07745 -19F,Candida albicans,I,Vagina,α/α,LEE,37,-0.08923,0.03871,-0.27054,0.18985,-0.17988,0.16428 -529L,Candida albicans,529L,Oral cavity,a/α,LEE,37,-0.172,0.03372,-0.05364,0.05817,-0.11282,0.07591 -529L,Candida albicans,529L,Oral cavity,a/α,YPD,30,0.10265,0.05696,0.13797,0.02159,0.12031,0.04655 -529L,Candida albicans,529L,Oral cavity,a/α,YPD,37,0.07727,0.04461,0.19281,0.05065,0.13504,0.07494 -529L,Candida albicans,529L,Oral cavity,a/α,LEE,30,-0.02499,0.05624,-0.06038,0.05067,-0.04269,0.05638 -529L,Candida albicans,529L,Oral cavity,a/α,SPI,30,0.76397,0.3195,0.35123,0.14109,0.5576,0.32184 -529L,Candida albicans,529L,Oral cavity,a/α,SPI,37,0.441,0.16246,0.62106,0.24005,0.53103,0.22386 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,37,0.24781,0.03583,0.36425,0.04264,0.30603,0.07029 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,30,0.05676,0.09029,0.04575,0.04257,0.05126,0.0708 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,30,-0.09071,0.00615,-0.13012,0.04834,-0.11042,0.03969 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,37,-0.09417,0.00854,-0.06888,0.03844,-0.08152,0.03058 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,37,0.03957,0.0529,0.04343,0.08728,0.0415,0.0722 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,30,0.30104,0.08522,0.22617,0.04188,0.2636,0.07687 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,30,0.15515,0.0585,0.11862,0.02578,0.13688,0.04876 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,37,-,-,-0.94378,0.0,-0.94378,0.0 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,37,0.06456,0.03519,0.13739,0.06159,0.10097,0.06198 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,37,-0.41139,0.26335,-0.34331,0.11452,-0.37735,0.2059 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,37,0.32199,0.10372,0.15624,0.0,0.26674,0.11522 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,30,0.33624,0.09503,0.20926,0.10146,0.27275,0.11702 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,30,0.15992,0.09481,0.26865,0.24097,0.21429,0.19101 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,30,-0.01005,0.03254,-0.05153,0.02146,-0.03079,0.0345 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,37,-0.21357,0.06394,-0.10166,0.16278,-0.15761,0.13573 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,30,0.07779,0.13593,0.07297,0.13369,0.07538,0.13484 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,30,-0.54076,0.32417,-0.7046,0.28829,-0.60629,0.32053 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,30,0.56116,0.48918,0.25159,0.09042,0.40637,0.38431 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,37,0.26615,0.11077,0.249,0.11255,0.25757,0.11199 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,37,-0.22496,0.06288,-0.22019,0.03057,-0.22258,0.0495 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,37,-0.99192,0.0,-0.84045,0.14364,-0.89094,0.13731 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,37,-0.22235,0.11556,-0.2052,0.23321,-0.21378,0.18424 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,30,-0.07796,0.09885,-0.00681,0.14046,-0.04239,0.12655 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.30278,0.13274,0.207,0.04062,0.25489,0.10922 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.21959,0.06781,0.4381,0.03631,0.32885,0.12205 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.09249,0.06226,0.12914,0.04499,0.11081,0.05732 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,30,-0.15502,0.1182,-0.07582,0.04223,-0.1075,0.09036 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,30,0.00195,0.00629,0.12229,0.05282,0.06212,0.07096 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,37,-0.20177,0.12749,-0.4274,0.27437,-0.31458,0.24185 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,37,0.12992,0.05153,0.12018,0.04618,0.12505,0.04917 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,37,0.16815,0.00448,0.43853,0.15725,0.30334,0.17508 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,30,0.23153,0.10967,0.26259,0.08374,0.24706,0.0988 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,30,-0.04323,0.05308,-0.0938,0.0239,-0.06852,0.04831 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.36743,0.06326,0.43847,0.20635,0.40295,0.1567 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.28243,0.15136,0.23881,0.07967,0.26062,0.1229 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,37,-0.04981,0.01764,-0.03897,0.05943,-0.04439,0.04417 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.13605,0.24846,0.0231,0.09149,0.07958,0.19555 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,30,-0.04933,0.06285,-0.00941,0.07677,-0.02937,0.07294 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,30,-0.42041,0.13892,-0.01768,0.18182,-0.21905,0.25832 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,37,-0.7128,0.20086,-0.69268,0.02089,-0.70274,0.14315 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,30,-0.10381,0.03996,-0.03811,0.01823,-0.07096,0.04521 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,37,0.15472,0.02769,0.30526,0.12722,0.22999,0.11892 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,37,-0.12555,0.05853,-0.05436,0.04979,-0.08996,0.06495 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,30,-0.49631,0.17565,-0.39051,0.121,-0.44341,0.15983 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,30,0.37698,0.03054,0.55278,0.07875,0.46488,0.10627 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,30,-0.13692,0.16359,-0.06799,0.10657,-0.10246,0.14229 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,37,-,-,-0.92528,0.09164,-0.92528,0.09164 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,30,3.53262,1.56853,0.24005,0.03561,1.55708,1.89386 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,30,0.05225,0.04798,0.0238,0.02258,0.03803,0.0401 -GC75,Candida albicans,SA,Oral cavity,a/α,YPD,37,0.12178,0.04529,0.05406,0.0492,0.08792,0.05816 -GC75,Candida albicans,SA,Oral cavity,a/α,YPD,30,0.143,0.06843,0.02702,0.03582,0.08501,0.07966 -GC75,Candida albicans,SA,Oral cavity,a/α,SPI,37,0.22402,0.02924,0.35762,0.06411,0.29082,0.08333 -GC75,Candida albicans,SA,Oral cavity,a/α,SPI,30,0.28803,0.12367,0.28736,0.02878,0.2877,0.08979 -GC75,Candida albicans,SA,Oral cavity,a/α,LEE,30,-0.1212,0.04089,-0.50867,0.11858,-0.31493,0.21307 -GC75,Candida albicans,SA,Oral cavity,a/α,LEE,37,-0.10733,0.12608,-0.32594,0.13508,-0.21664,0.17035 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,37,0.53982,0.28792,0.27983,0.05117,0.43583,0.25886 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,30,0.28988,0.10074,0.35449,0.1726,0.32219,0.14496 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,37,-0.02554,0.04844,-0.51378,0.41735,-0.26966,0.38452 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,37,0.10074,0.05249,0.0418,0.09143,0.07127,0.08016 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,30,0.12302,0.10905,-0.01958,0.01244,0.05172,0.10539 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,30,0.16155,0.04651,0.1584,0.11125,0.15997,0.08528 -L26,Candida albicans,I,Vagina,a/a,SPI,30,0.1824,0.03441,0.28318,0.05332,0.23279,0.06747 -L26,Candida albicans,I,Vagina,a/a,YPD,37,0.4013,0.31601,0.09973,0.04673,0.30077,0.29583 -L26,Candida albicans,I,Vagina,a/a,YPD,30,0.22953,0.02028,0.1358,0.08309,0.18267,0.07651 -L26,Candida albicans,I,Vagina,a/a,LEE,30,-0.04675,0.03686,-0.41031,0.36015,-0.22853,0.31397 -L26,Candida albicans,I,Vagina,a/a,SPI,37,0.14651,0.01592,0.47404,0.16117,0.34302,0.20355 -L26,Candida albicans,I,Vagina,a/a,LEE,37,-0.18102,0.15419,-0.82338,0.02109,-0.5022,0.33951 -P34048,Candida albicans,III,Bloodstream,a/α,LEE,37,-0.07721,0.06021,-0.56364,0.23517,-0.32043,0.29769 -P34048,Candida albicans,III,Bloodstream,a/α,SPI,30,0.34379,0.15011,0.24816,0.06084,0.29598,0.12411 -P34048,Candida albicans,III,Bloodstream,a/α,YPD,37,0.24187,0.38409,0.13585,0.14936,0.19643,0.31083 -P34048,Candida albicans,III,Bloodstream,a/α,YPD,30,0.0484,0.052,0.07903,0.0754,0.06372,0.06655 -P34048,Candida albicans,III,Bloodstream,a/α,SPI,37,0.40667,0.19144,0.33579,0.15025,0.37123,0.17569 -P34048,Candida albicans,III,Bloodstream,a/α,LEE,30,-0.13806,0.25482,-0.19441,0.21593,-0.16624,0.23785 -P37005,Candida albicans,I,Oral cavity,a/a,YPD,37,0.40995,0.30997,0.1583,0.13341,0.32607,0.28993 -P37005,Candida albicans,I,Oral cavity,a/a,YPD,30,0.08293,0.07678,0.05511,0.03795,0.06902,0.06214 -P37005,Candida albicans,I,Oral cavity,a/a,LEE,37,-0.05025,0.07355,-0.03269,0.04913,-0.04147,0.06316 -P37005,Candida albicans,I,Oral cavity,a/a,LEE,30,-0.27506,0.35284,-0.05103,0.08298,-0.16304,0.27971 -P37005,Candida albicans,I,Oral cavity,a/a,SPI,30,0.22349,0.06303,0.19419,0.03096,0.20884,0.05177 -P37005,Candida albicans,I,Oral cavity,a/a,SPI,37,0.37134,0.084,0.21147,0.05498,0.27542,0.10378 -P37037,Candida albicans,I,Oral cavity,a/α,SPI,30,0.42458,0.16919,0.20811,0.03882,0.31635,0.16365 -P37037,Candida albicans,I,Oral cavity,a/α,LEE,30,-0.01747,0.02972,-0.0878,0.02925,-0.05264,0.04589 -P37037,Candida albicans,I,Oral cavity,a/α,YPD,30,0.18345,0.18786,0.17751,0.13348,0.18048,0.16298 -P37037,Candida albicans,I,Oral cavity,a/α,YPD,37,0.02876,0.06888,0.15137,0.05448,0.09882,0.08609 -P37037,Candida albicans,I,Oral cavity,a/α,LEE,37,-0.1874,0.20732,-0.02009,0.05022,-0.10374,0.17248 -P37037,Candida albicans,I,Oral cavity,a/α,SPI,37,0.57556,0.08937,0.47688,0.29484,0.52622,0.22336 -P37039,Candida albicans,I,Bloodstream,a/α,YPD,30,0.15024,0.12527,0.093,0.10566,0.12162,0.11937 -P37039,Candida albicans,I,Bloodstream,a/α,LEE,30,-0.0126,0.05173,-0.19819,0.31891,-0.1054,0.24658 -P37039,Candida albicans,I,Bloodstream,a/α,LEE,37,-0.06909,0.06682,-0.17973,0.24474,-0.12441,0.18773 -P37039,Candida albicans,I,Bloodstream,a/α,SPI,30,0.17708,0.03416,0.25065,0.05002,0.21387,0.05646 -P37039,Candida albicans,I,Bloodstream,a/α,SPI,37,0.22933,0.06008,0.28768,0.06033,0.2585,0.06691 -P37039,Candida albicans,I,Bloodstream,a/α,YPD,37,0.08914,0.14993,0.07312,0.10835,0.08113,0.13105 -P57055,Candida albicans,III,Bloodstream,a/α,LEE,30,-0.04046,0.05759,-0.31142,0.36746,-0.17594,0.29585 -P57055,Candida albicans,III,Bloodstream,a/α,LEE,37,-0.09342,0.13074,-0.08379,0.04193,-0.08861,0.09721 -P57055,Candida albicans,III,Bloodstream,a/α,YPD,30,0.11791,0.01678,0.07271,0.04972,0.09531,0.04345 -P57055,Candida albicans,III,Bloodstream,a/α,SPI,37,0.37073,0.21586,0.30106,0.08404,0.3359,0.16746 -P57055,Candida albicans,III,Bloodstream,a/α,YPD,37,0.04478,0.0718,0.01312,0.17319,0.02895,0.13351 -P57055,Candida albicans,III,Bloodstream,a/α,SPI,30,0.34398,0.28243,0.23475,0.03919,0.28936,0.20889 -P57072,Candida albicans,II,Bloodstream,α/α,SPI,30,0.27147,0.09582,0.18553,0.05762,0.2285,0.08998 -P57072,Candida albicans,II,Bloodstream,α/α,SPI,37,0.28902,0.08601,0.47858,0.20827,0.37518,0.18072 -P57072,Candida albicans,II,Bloodstream,α/α,LEE,37,-0.25818,0.29755,-0.377,0.26048,-0.31759,0.28587 -P57072,Candida albicans,II,Bloodstream,α/α,YPD,30,0.1332,0.08506,0.06669,0.09986,0.09995,0.09854 -P57072,Candida albicans,II,Bloodstream,α/α,LEE,30,-0.23778,0.20026,-0.02885,0.06863,-0.13332,0.18254 -P57072,Candida albicans,II,Bloodstream,α/α,YPD,37,0.1785,0.28389,0.06796,0.07799,0.13113,0.22728 -P60002,Candida albicans,SA,Bloodstream,a/a,LEE,37,-0.10764,0.08043,-0.09909,0.04194,-0.10337,0.06428 -P60002,Candida albicans,SA,Bloodstream,a/a,LEE,30,-0.09777,0.05773,-0.08857,0.0586,-0.09317,0.05835 -P60002,Candida albicans,SA,Bloodstream,a/a,YPD,30,0.08737,0.11095,0.03946,0.09158,0.06342,0.10451 -P60002,Candida albicans,SA,Bloodstream,a/a,SPI,37,0.38247,0.11911,0.33901,0.11068,0.36074,0.11701 -P60002,Candida albicans,SA,Bloodstream,a/a,YPD,37,0.02769,0.04956,0.07541,0.06554,0.05155,0.06281 -P60002,Candida albicans,SA,Bloodstream,a/a,SPI,30,0.28738,0.09165,0.41674,0.36199,0.35206,0.27185 -P75010,Candida albicans,E,Bloodstream,a/α,SPI,37,0.2752,0.04497,0.33501,0.10986,0.3051,0.08911 -P75010,Candida albicans,E,Bloodstream,a/α,YPD,30,0.12261,0.07198,0.18336,0.03999,0.15298,0.06567 -P75010,Candida albicans,E,Bloodstream,a/α,LEE,37,-0.09211,0.0736,-0.15669,0.08917,-0.1244,0.0879 -P75010,Candida albicans,E,Bloodstream,a/α,SPI,30,0.30983,0.13422,0.37159,0.34613,0.34071,0.26432 -P75010,Candida albicans,E,Bloodstream,a/α,YPD,37,0.09349,0.07765,0.10463,0.08116,0.09906,0.07962 -P75010,Candida albicans,E,Bloodstream,a/α,LEE,30,-0.1085,0.05142,-0.1093,0.04122,-0.1089,0.0466 -P75016,Candida albicans,SA,Bloodstream,a/α,SPI,37,0.37552,0.15942,0.36015,0.1474,0.36784,0.15372 -P75016,Candida albicans,SA,Bloodstream,a/α,SPI,30,0.27907,0.12028,0.28337,0.1203,0.28122,0.12031 -P75016,Candida albicans,SA,Bloodstream,a/α,YPD,30,0.10861,0.11907,0.12807,0.13663,0.11834,0.12852 -P75016,Candida albicans,SA,Bloodstream,a/α,LEE,30,-0.1514,0.10162,-0.12686,0.0782,-0.13913,0.0915 -P75016,Candida albicans,SA,Bloodstream,a/α,YPD,37,0.06838,0.07971,0.05395,0.04039,0.06117,0.0636 -P75016,Candida albicans,SA,Bloodstream,a/α,LEE,37,-0.06784,0.073,-0.07824,0.03059,-0.07304,0.05621 -P75063,Candida albicans,SA,Bloodstream,α/-,YPD,37,0.43639,0.31586,0.14589,0.11791,0.33956,0.29983 -P75063,Candida albicans,SA,Bloodstream,α/-,YPD,30,0.0826,0.09144,0.04716,0.02888,0.06488,0.07008 -P75063,Candida albicans,SA,Bloodstream,α/-,LEE,30,-0.00565,0.04619,-0.03542,0.08033,-0.02053,0.06719 -P75063,Candida albicans,SA,Bloodstream,α/-,LEE,37,-0.51613,0.27766,-0.01219,0.00601,-0.26416,0.31946 -P75063,Candida albicans,SA,Bloodstream,α/-,SPI,37,0.25639,0.0595,0.32908,0.09455,0.29274,0.08695 -P75063,Candida albicans,SA,Bloodstream,α/-,SPI,30,0.23418,0.04655,0.24566,0.07532,0.23992,0.06287 -P76055,Candida albicans,II,Bloodstream,a/α,SPI,30,0.27443,0.13986,0.16728,0.03279,0.22086,0.11484 -P76055,Candida albicans,II,Bloodstream,a/α,YPD,30,0.18004,0.16851,0.25785,0.09205,0.21895,0.14124 -P76055,Candida albicans,II,Bloodstream,a/α,LEE,37,-0.128,0.02438,-0.25605,0.13317,-0.19203,0.11517 -P76055,Candida albicans,II,Bloodstream,a/α,SPI,37,0.47839,0.23091,0.24837,0.08096,0.36338,0.20776 -P76055,Candida albicans,II,Bloodstream,a/α,LEE,30,-0.01368,0.06578,-0.01791,0.05565,-0.01579,0.06096 -P76055,Candida albicans,II,Bloodstream,a/α,YPD,37,0.12133,0.08353,0.25196,0.12111,0.18664,0.12284 -P76067,Candida albicans,II,Bloodstream,a/α,SPI,30,1.96451,1.08699,1.40001,0.48797,1.6566,0.86369 -P76067,Candida albicans,II,Bloodstream,a/α,LEE,30,-0.08998,0.07848,-0.06208,0.08878,-0.0773,0.08447 -P76067,Candida albicans,II,Bloodstream,a/α,LEE,37,-0.06589,0.06482,-0.14899,0.09736,-0.10744,0.09255 -P76067,Candida albicans,II,Bloodstream,a/α,YPD,37,0.13529,0.06662,0.12782,0.12149,0.13155,0.09805 -P76067,Candida albicans,II,Bloodstream,a/α,YPD,30,0.46645,0.09227,0.26357,0.13443,0.35579,0.1547 -P76067,Candida albicans,II,Bloodstream,a/α,SPI,37,0.48725,0.12839,0.37463,0.0877,0.43094,0.12353 -P78042,Candida albicans,III,Bloodstream,a/α,YPD,37,0.15053,0.10597,0.11878,0.19145,0.13465,0.15554 -P78042,Candida albicans,III,Bloodstream,a/α,LEE,30,-0.02409,0.06358,-0.06982,0.01683,-0.04696,0.05182 -P78042,Candida albicans,III,Bloodstream,a/α,SPI,37,0.36157,0.11721,0.31645,0.0139,0.33901,0.08645 -P78042,Candida albicans,III,Bloodstream,a/α,LEE,37,-0.08498,0.02669,-0.1091,0.02424,-0.09704,0.0282 -P78042,Candida albicans,III,Bloodstream,a/α,SPI,30,0.48766,0.13675,0.38665,0.0365,0.43716,0.1121 -P78042,Candida albicans,III,Bloodstream,a/α,YPD,30,0.16136,0.18463,0.20492,0.08911,0.18314,0.14659 -P78048,Candida albicans,I,Bloodstream,α/α,LEE,37,-0.2315,0.11715,-0.17935,0.13163,-0.20542,0.1273 -P78048,Candida albicans,I,Bloodstream,α/α,YPD,37,0.25629,0.21899,0.14078,0.0667,0.21008,0.18373 -P78048,Candida albicans,I,Bloodstream,α/α,YPD,30,0.06269,0.04443,0.06479,0.08043,0.06374,0.06498 -P78048,Candida albicans,I,Bloodstream,α/α,SPI,30,0.22606,0.10838,0.29909,0.08999,0.26257,0.10609 -P78048,Candida albicans,I,Bloodstream,α/α,SPI,37,0.28549,0.07521,0.24891,0.06627,0.2672,0.0732 -P78048,Candida albicans,I,Bloodstream,α/α,LEE,30,-0.04377,0.05186,-0.19432,0.22102,-0.11905,0.1773 -P87,Candida albicans,SA,Oral cavity,a/a,YPD,37,0.28004,0.29705,0.07121,0.22865,0.19651,0.29038 -P87,Candida albicans,SA,Oral cavity,a/a,YPD,30,0.0996,0.09517,0.1064,0.11316,0.103,0.10461 -P87,Candida albicans,SA,Oral cavity,a/a,LEE,30,-0.18624,0.26727,-0.10737,0.1309,-0.14681,0.2141 -P87,Candida albicans,SA,Oral cavity,a/a,SPI,30,0.1748,0.01382,0.20668,0.05681,0.19606,0.04941 -P87,Candida albicans,SA,Oral cavity,a/a,LEE,37,-0.24112,0.19811,-0.1087,0.06223,-0.17491,0.16107 -P87,Candida albicans,SA,Oral cavity,a/a,SPI,37,0.78745,0.32976,0.78296,0.27819,0.78521,0.30508 -P94015,Candida albicans,I,Bloodstream,a/a,SPI,30,0.94036,0.56363,1.02914,0.41858,0.98475,0.49841 -P94015,Candida albicans,I,Bloodstream,a/a,SPI,37,0.41015,0.29012,0.44398,0.20491,0.42707,0.25173 -P94015,Candida albicans,I,Bloodstream,a/a,LEE,30,-0.19419,0.28298,-0.19917,0.27956,-0.19668,0.28129 -P94015,Candida albicans,I,Bloodstream,a/a,YPD,30,0.14206,0.11834,0.074,0.20584,0.10803,0.1713 -P94015,Candida albicans,I,Bloodstream,a/a,LEE,37,-0.27706,0.28252,-0.0714,0.05421,-0.17423,0.22793 -P94015,Candida albicans,I,Bloodstream,a/a,YPD,37,0.0572,0.04868,-0.08802,0.11699,-0.01541,0.11532 -SC5314,Candida albicans,I,Bloodstream,a/α,YPD,30,0.28722,0.09674,0.18579,0.15501,0.23651,0.1388 -SC5314,Candida albicans,I,Bloodstream,a/α,YPD,37,-0.23334,0.14927,-0.00995,0.08179,-0.12164,0.1642 -SC5314,Candida albicans,I,Bloodstream,a/α,LEE,37,-0.11099,0.06829,-0.08615,0.00656,-0.09857,0.05007 -SC5314,Candida albicans,I,Bloodstream,a/α,LEE,30,-0.01106,0.08714,-0.09,0.01917,-0.05053,0.07442 -SC5314,Candida albicans,I,Bloodstream,a/α,SPI,37,0.67101,0.2304,0.50393,0.16271,0.58747,0.21624 -SC5314,Candida albicans,I,Bloodstream,a/α,SPI,30,0.5454,0.12933,0.47513,0.15885,0.51027,0.14905 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,30,-,-,1.28226,0.48597,1.28226,0.48597 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,30,-,-,-0.04144,0.03337,-0.04144,0.03337 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,30,-,-,0.15073,0.05365,0.15073,0.05365 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,37,-,-,-0.00447,0.03905,-0.00447,0.03905 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,37,-,-,0.10756,0.11855,0.10756,0.11855 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,37,-,-,0.67078,0.17697,0.67078,0.17697 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,30,-0.03575,0.06478,-0.26474,0.38331,-0.15025,0.29778 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,30,0.15643,0.00544,0.11431,0.09245,0.13537,0.06879 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,37,1.22802,0.23879,0.71508,0.44828,0.97155,0.44132 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,37,-0.38543,0.26521,-0.34904,0.30265,-0.36724,0.28513 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,37,0.09713,0.0234,0.1322,0.09448,0.11466,0.07102 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,30,1.36474,0.92771,0.43757,0.2214,0.90116,0.81838 diff --git a/invasion_scores_sorted.csv b/invasion_scores_sorted.csv deleted file mode 100644 index 2564fc6c9fd4de30812232f84d4ff1e957275103..0000000000000000000000000000000000000000 --- a/invasion_scores_sorted.csv +++ /dev/null @@ -1,205 +0,0 @@ -MAY Strain #,Species,Soll Clade,Isolation Site, MTL Genotype, Media,Temperature(°C),MJD Phenotype Score,MJD Score St. Dev.,RJF Phenotype Score,RJF Score St. Dev.,Total Average Phenotype Score,Total Phenotype Score St. Dev. -12C,Candida albicans,I,Oral cavity,a/a,LEE,37,0.02448,0.00746,0.02399,0.00652,0.02423,0.00701 -12C,Candida albicans,I,Oral cavity,a/a,YPD,37,0.68093,0.01071,0.61408,0.02662,0.64082,0.03929 -12C,Candida albicans,I,Oral cavity,a/a,LEE,30,0.03817,0.02733,0.02217,0.01603,0.03017,0.02379 -12C,Candida albicans,I,Oral cavity,a/a,SPI,37,0.40171,0.08558,0.48821,0.07159,0.44496,0.08997 -12C,Candida albicans,I,Oral cavity,a/a,YPD,30,0.78618,0.01644,0.73301,0.06967,0.7596,0.05717 -12C,Candida albicans,I,Oral cavity,a/a,SPI,30,0.82793,0.12708,0.61876,0.1542,0.72335,0.17579 -19F,Candida albicans,I,Vagina,α/α,YPD,37,0.10936,0.06266,0.11311,0.03415,0.11124,0.05049 -19F,Candida albicans,I,Vagina,α/α,LEE,30,0.04989,0.02389,0.01114,0.00204,0.03439,0.02654 -19F,Candida albicans,I,Vagina,α/α,LEE,37,0.03473,0.00956,0.01771,0.00462,0.02622,0.01135 -19F,Candida albicans,I,Vagina,α/α,SPI,30,0.06744,0.04867,0.03685,0.04141,0.05215,0.0477 -19F,Candida albicans,I,Vagina,α/α,YPD,30,0.26531,0.06375,0.245,0.03492,0.25515,0.05239 -19F,Candida albicans,I,Vagina,α/α,SPI,37,0.41642,0.02187,0.2746,0.146,0.34551,0.1262 -529L,Candida albicans,529L,Oral cavity,a/α,SPI,37,0.28098,0.04302,0.21823,0.04747,0.24961,0.0551 -529L,Candida albicans,529L,Oral cavity,a/α,YPD,30,0.49648,0.04984,0.43892,0.08436,0.4677,0.07502 -529L,Candida albicans,529L,Oral cavity,a/α,LEE,30,0.04886,0.00972,0.0588,0.01459,0.05383,0.01336 -529L,Candida albicans,529L,Oral cavity,a/α,YPD,37,0.52249,0.05964,0.48237,0.11294,0.50243,0.09252 -529L,Candida albicans,529L,Oral cavity,a/α,SPI,30,0.59825,0.16603,0.52675,0.00464,0.5625,0.12276 -529L,Candida albicans,529L,Oral cavity,a/α,LEE,37,0.581,0.09418,0.56779,0.04772,0.57439,0.07495 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,30,0.30654,0.02423,0.26392,0.04002,0.28523,0.03935 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,37,0.70757,0.02372,0.69363,0.06282,0.7006,0.04799 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,37,0.3895,0.0433,0.35357,0.0055,0.37153,0.03571 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,30,0.82251,0.01095,0.72593,0.05826,0.77422,0.06394 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,30,0.65342,0.02298,0.58308,0.02888,0.61825,0.0438 -C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,37,0.8021,0.053,0.80941,0.02359,0.80576,0.04118 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,30,0.4324,0.0,0.57498,0.0432,0.52745,0.07591 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,37,0.52634,0.15667,0.33724,0.13725,0.43179,0.17502 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,30,0.11168,0.02914,0.18742,0.07307,0.14955,0.06729 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,30,0.96266,0.05281,0.60765,0.04898,0.82065,0.18133 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,37,0.66593,0.19499,0.6084,0.00838,0.64292,0.15374 -C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,37,0.22189,0.02527,0.27282,0.02732,0.24735,0.03662 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,37,0.76823,0.26682,0.53362,0.22012,0.65093,0.27126 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,30,0.4684,0.08259,0.7152,0.20233,0.5918,0.19775 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,37,0.89338,0.07985,0.92412,0.10731,0.90875,0.09582 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,30,0.74607,0.01236,0.7721,0.08078,0.75908,0.05924 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,37,0.39222,0.15638,0.54297,0.08064,0.4676,0.14546 -C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,30,0.83338,0.0269,0.83411,0.05656,0.83374,0.04429 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,30,0.34941,0.27714,0.2975,0.14146,0.32346,0.22155 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,30,0.30342,0.1516,0.25767,0.14496,0.28055,0.15007 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,37,0.26549,0.06474,0.12356,0.07491,0.19452,0.09969 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,37,0.20683,0.04697,0.46655,0.36483,0.33669,0.29072 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,37,0.20345,0.1442,0.44617,0.0665,0.32481,0.16533 -C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,30,0.33783,0.01885,0.30857,0.03199,0.3232,0.03006 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.73181,0.02848,0.73173,0.01013,0.73177,0.02138 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.30029,0.1361,0.38609,0.03088,0.34319,0.1076 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.6468,0.03698,0.7179,0.03078,0.68235,0.0492 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.45833,0.12857,0.52345,0.04435,0.49089,0.10153 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,30,0.75226,0.01031,0.74619,0.06103,0.74923,0.04387 -C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.68147,0.02751,0.68035,0.02705,0.68091,0.02729 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,30,0.61617,0.09739,0.38426,0.04853,0.50021,0.13916 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,30,0.4454,0.13386,0.49556,0.03,0.47048,0.10019 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,37,0.32808,0.0111,0.35854,0.04361,0.34331,0.03527 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,37,0.41607,0.07054,0.33561,0.01638,0.37584,0.06512 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,30,0.61969,0.01844,0.64575,0.01332,0.63272,0.0207 -C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,37,0.43681,0.05087,0.35385,0.04936,0.39533,0.06506 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.94099,0.00204,0.94241,0.01137,0.9417,0.0082 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.97824,0.01053,0.92918,0.01622,0.95371,0.02808 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.99386,0.00868,0.96994,0.04252,0.9819,0.03293 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.99423,0.00472,0.94047,0.02992,0.96735,0.03437 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.69471,0.04214,0.71962,0.03157,0.70716,0.03926 -C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,30,0.86361,0.02547,0.88896,0.01773,0.87629,0.02534 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,30,1.0,0.0,0.98101,0.02685,0.99051,0.02123 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,37,0.8577,0.0748,0.89626,0.07652,0.87698,0.07808 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,37,0.99661,0.00479,0.97685,0.03275,0.98673,0.0254 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,30,0.86525,0.17011,0.87031,0.1834,0.86778,0.1769 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,30,0.99043,0.01061,0.93706,0.04452,0.96374,0.04195 -C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,37,0.93801,0.03327,0.9528,0.03439,0.9454,0.03463 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,30,0.67298,0.26699,0.28238,0.05961,0.47768,0.27488 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,30,0.58941,0.04569,0.50172,0.22797,0.54557,0.17015 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,37,0.93949,0.08557,1.0,0.0,0.96974,0.06765 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,37,0.7074,0.04797,1.0,0.0,0.8537,0.15018 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,30,0.12853,0.12021,0.02462,0.02123,0.07658,0.10075 -D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,37,0.48275,0.28576,1.0,0.0,0.74137,0.3282 -GC75,Candida albicans,SA,Oral cavity,a/α,SPI,37,0.15272,0.11125,0.14363,0.0057,0.14818,0.0789 -GC75,Candida albicans,SA,Oral cavity,a/α,YPD,37,0.49733,0.022,0.11014,0.04516,0.30373,0.19683 -GC75,Candida albicans,SA,Oral cavity,a/α,YPD,30,0.09882,0.06738,0.12243,0.04562,0.11062,0.05873 -GC75,Candida albicans,SA,Oral cavity,a/α,LEE,30,0.01802,0.02114,0.02085,0.02215,0.01944,0.0217 -GC75,Candida albicans,SA,Oral cavity,a/α,SPI,30,0.00625,0.00296,0.06599,0.03845,0.04209,0.0418 -GC75,Candida albicans,SA,Oral cavity,a/α,LEE,37,0.01331,0.00556,0.0187,0.00287,0.01601,0.00518 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,30,0.27258,0.0159,0.1907,0.07513,0.23164,0.06801 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,30,0.81034,0.01491,0.75941,0.04526,0.78487,0.04224 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,37,0.30374,0.17936,0.3205,0.17961,0.31212,0.17968 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,30,0.58887,0.03126,0.55456,0.01794,0.57171,0.03072 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,37,0.69281,0.0629,0.53376,0.25039,0.61329,0.19913 -L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,37,0.34746,0.02037,0.42371,0.09529,0.38559,0.07875 -L26,Candida albicans,I,Vagina,a/a,LEE,30,0.03355,0.02283,0.0491,0.0359,0.04132,0.03107 -L26,Candida albicans,I,Vagina,a/a,LEE,37,0.03704,0.03129,0.01949,0.00864,0.02827,0.02458 -L26,Candida albicans,I,Vagina,a/a,YPD,30,0.67327,0.10005,0.65267,0.04901,0.66297,0.07945 -L26,Candida albicans,I,Vagina,a/a,SPI,30,0.26736,0.11858,0.23906,0.0644,0.25321,0.09646 -L26,Candida albicans,I,Vagina,a/a,YPD,37,0.67622,0.064,0.72153,0.02386,0.69887,0.05334 -L26,Candida albicans,I,Vagina,a/a,SPI,37,0.24988,0.037,0.23664,0.06438,0.24194,0.05546 -P34048,Candida albicans,III,Bloodstream,a/α,LEE,30,0.14195,0.08182,0.11547,0.08178,0.12871,0.08287 -P34048,Candida albicans,III,Bloodstream,a/α,SPI,37,0.26382,0.07863,0.20863,0.14597,0.23622,0.12044 -P34048,Candida albicans,III,Bloodstream,a/α,SPI,30,0.09094,0.08502,0.09485,0.08103,0.0929,0.08308 -P34048,Candida albicans,III,Bloodstream,a/α,LEE,37,0.07275,0.04506,0.07182,0.06726,0.07229,0.05725 -P34048,Candida albicans,III,Bloodstream,a/α,YPD,37,0.55893,0.06283,0.30529,0.13371,0.42058,0.16582 -P34048,Candida albicans,III,Bloodstream,a/α,YPD,30,0.3699,0.06271,0.24104,0.14096,0.30547,0.1267 -P37005,Candida albicans,I,Oral cavity,a/a,SPI,37,0.2094,0.16055,0.20993,0.09116,0.20972,0.12368 -P37005,Candida albicans,I,Oral cavity,a/a,YPD,30,0.33445,0.07006,0.51052,0.05803,0.42248,0.10903 -P37005,Candida albicans,I,Oral cavity,a/a,SPI,30,0.38957,0.22116,0.14755,0.07015,0.26856,0.20386 -P37005,Candida albicans,I,Oral cavity,a/a,LEE,37,0.07893,0.02843,0.03387,0.01011,0.0564,0.03103 -P37005,Candida albicans,I,Oral cavity,a/a,YPD,37,0.42005,0.05842,0.40877,0.08216,0.41441,0.07151 -P37005,Candida albicans,I,Oral cavity,a/a,LEE,30,0.0331,0.00741,0.03436,0.0114,0.03373,0.00964 -P37037,Candida albicans,I,Oral cavity,a/α,YPD,37,0.2383,0.22991,0.3949,0.11151,0.3166,0.19692 -P37037,Candida albicans,I,Oral cavity,a/α,SPI,30,0.39665,0.29413,0.08097,0.06118,0.23881,0.26465 -P37037,Candida albicans,I,Oral cavity,a/α,YPD,30,0.45832,0.13866,0.242,0.16268,0.35016,0.18586 -P37037,Candida albicans,I,Oral cavity,a/α,LEE,30,0.15982,0.08804,0.07127,0.02823,0.11554,0.07896 -P37037,Candida albicans,I,Oral cavity,a/α,LEE,37,0.09021,0.04888,0.04174,0.00472,0.06598,0.04234 -P37037,Candida albicans,I,Oral cavity,a/α,SPI,37,0.24209,0.213,0.06532,0.04082,0.15371,0.177 -P37039,Candida albicans,I,Bloodstream,a/α,YPD,37,0.36433,0.14421,0.25377,0.08006,0.30905,0.12907 -P37039,Candida albicans,I,Bloodstream,a/α,LEE,37,0.02903,0.01205,0.02618,0.0139,0.0276,0.01308 -P37039,Candida albicans,I,Bloodstream,a/α,SPI,30,0.31517,0.16455,0.19525,0.11266,0.25521,0.15323 -P37039,Candida albicans,I,Bloodstream,a/α,SPI,37,0.3642,0.08498,0.4672,0.1238,0.4157,0.11801 -P37039,Candida albicans,I,Bloodstream,a/α,LEE,30,0.02077,0.00909,0.05373,0.04047,0.03725,0.03364 -P37039,Candida albicans,I,Bloodstream,a/α,YPD,30,0.27806,0.07975,0.19083,0.09499,0.23444,0.09795 -P57055,Candida albicans,III,Bloodstream,a/α,LEE,37,0.01867,0.01278,0.05101,0.04916,0.03484,0.03939 -P57055,Candida albicans,III,Bloodstream,a/α,YPD,30,0.46581,0.11926,0.50242,0.14036,0.48412,0.13152 -P57055,Candida albicans,III,Bloodstream,a/α,LEE,30,0.02837,0.01308,0.08544,0.10099,0.0569,0.07746 -P57055,Candida albicans,III,Bloodstream,a/α,SPI,30,0.16614,0.06825,0.1057,0.10104,0.13592,0.09137 -P57055,Candida albicans,III,Bloodstream,a/α,SPI,37,0.19619,0.05391,0.14958,0.08527,0.17289,0.07504 -P57055,Candida albicans,III,Bloodstream,a/α,YPD,37,0.49469,0.07462,0.40608,0.15895,0.45039,0.13183 -P57072,Candida albicans,II,Bloodstream,α/α,YPD,37,0.64694,0.12155,0.5825,0.10295,0.61472,0.11715 -P57072,Candida albicans,II,Bloodstream,α/α,LEE,30,0.38247,0.29736,0.5065,0.47115,0.44449,0.39881 -P57072,Candida albicans,II,Bloodstream,α/α,SPI,30,0.48708,0.30079,0.49774,0.22524,0.49241,0.26577 -P57072,Candida albicans,II,Bloodstream,α/α,YPD,30,0.51701,0.03141,0.42434,0.14905,0.47068,0.11725 -P57072,Candida albicans,II,Bloodstream,α/α,SPI,37,0.05232,0.03199,0.06933,0.01465,0.06082,0.02629 -P57072,Candida albicans,II,Bloodstream,α/α,LEE,37,0.43145,0.33746,0.23659,0.21148,0.33402,0.29798 -P60002,Candida albicans,SA,Bloodstream,a/a,LEE,37,0.01832,0.00821,0.02884,0.01897,0.02358,0.01553 -P60002,Candida albicans,SA,Bloodstream,a/a,SPI,37,0.53897,0.08691,0.48224,0.20257,0.5106,0.15842 -P60002,Candida albicans,SA,Bloodstream,a/a,YPD,30,0.5149,0.37242,0.42545,0.28168,0.47018,0.3332 -P60002,Candida albicans,SA,Bloodstream,a/a,SPI,30,0.67841,0.31215,0.35775,0.30709,0.51808,0.34868 -P60002,Candida albicans,SA,Bloodstream,a/a,LEE,30,0.10975,0.06659,0.08957,0.07167,0.09966,0.06991 -P60002,Candida albicans,SA,Bloodstream,a/a,YPD,37,0.44121,0.26979,0.36421,0.22243,0.40271,0.25023 -P75010,Candida albicans,E,Bloodstream,a/α,LEE,30,0.03914,0.04533,0.02354,0.01732,0.03134,0.03519 -P75010,Candida albicans,E,Bloodstream,a/α,SPI,37,0.33646,0.14253,0.36342,0.09994,0.34994,0.12383 -P75010,Candida albicans,E,Bloodstream,a/α,LEE,37,0.01344,0.0052,0.01703,0.01834,0.01523,0.0136 -P75010,Candida albicans,E,Bloodstream,a/α,YPD,30,0.68989,0.13151,0.7232,0.1498,0.70655,0.14193 -P75010,Candida albicans,E,Bloodstream,a/α,SPI,30,0.35418,0.1657,0.4791,0.10519,0.41664,0.15219 -P75010,Candida albicans,E,Bloodstream,a/α,YPD,37,0.62849,0.03307,0.6783,0.12799,0.6534,0.09674 -P75016,Candida albicans,SA,Bloodstream,a/α,LEE,37,0.06993,0.07992,0.1406,0.10665,0.10527,0.10065 -P75016,Candida albicans,SA,Bloodstream,a/α,LEE,30,0.0863,0.09679,0.11996,0.0915,0.10313,0.09568 -P75016,Candida albicans,SA,Bloodstream,a/α,SPI,30,0.76282,0.24459,0.57969,0.19947,0.67125,0.24123 -P75016,Candida albicans,SA,Bloodstream,a/α,YPD,30,0.61974,0.05117,0.42325,0.20437,0.52149,0.17845 -P75016,Candida albicans,SA,Bloodstream,a/α,SPI,37,0.65615,0.05019,0.62589,0.10369,0.64102,0.08285 -P75016,Candida albicans,SA,Bloodstream,a/α,YPD,37,0.45649,0.08838,0.32538,0.23858,0.39094,0.19148 -P75063,Candida albicans,SA,Bloodstream,α/-,LEE,30,0.03202,0.01924,0.02276,0.0048,0.02739,0.01476 -P75063,Candida albicans,SA,Bloodstream,α/-,LEE,37,0.05132,0.02707,0.01624,0.00282,0.03378,0.02604 -P75063,Candida albicans,SA,Bloodstream,α/-,SPI,30,0.17878,0.10697,0.08416,0.06652,0.13147,0.10086 -P75063,Candida albicans,SA,Bloodstream,α/-,YPD,30,0.25119,0.01975,0.38456,0.06049,0.31787,0.08044 -P75063,Candida albicans,SA,Bloodstream,α/-,YPD,37,0.48191,0.0287,0.48663,0.04877,0.48427,0.04008 -P75063,Candida albicans,SA,Bloodstream,α/-,SPI,37,0.33137,0.06543,0.11373,0.03314,0.22255,0.12055 -P76055,Candida albicans,II,Bloodstream,a/α,LEE,30,0.035,0.0186,0.02647,0.01219,0.03073,0.01629 -P76055,Candida albicans,II,Bloodstream,a/α,YPD,30,0.46279,0.0582,0.26596,0.09603,0.36437,0.12645 -P76055,Candida albicans,II,Bloodstream,a/α,YPD,37,0.40027,0.02888,0.22052,0.05256,0.31039,0.09938 -P76055,Candida albicans,II,Bloodstream,a/α,SPI,37,0.43061,0.00815,0.36724,0.03353,0.39259,0.0408 -P76055,Candida albicans,II,Bloodstream,a/α,LEE,37,0.0157,0.00509,0.00951,0.00289,0.0126,0.00517 -P76055,Candida albicans,II,Bloodstream,a/α,SPI,30,0.07854,0.03972,0.0704,0.04567,0.07447,0.04299 -P76067,Candida albicans,II,Bloodstream,a/α,LEE,37,0.06724,0.0615,0.14745,0.17078,0.10734,0.13447 -P76067,Candida albicans,II,Bloodstream,a/α,SPI,37,0.78181,0.09756,0.8426,0.07051,0.8122,0.09038 -P76067,Candida albicans,II,Bloodstream,a/α,LEE,30,0.08479,0.08607,0.05899,0.03141,0.07189,0.06605 -P76067,Candida albicans,II,Bloodstream,a/α,YPD,30,1.0,0.0,0.98663,0.0299,0.99271,0.02307 -P76067,Candida albicans,II,Bloodstream,a/α,YPD,37,0.98119,0.01927,0.9075,0.07531,0.94435,0.06617 -P76067,Candida albicans,II,Bloodstream,a/α,SPI,30,0.97471,0.03686,0.99599,0.00896,0.98632,0.02782 -P78042,Candida albicans,III,Bloodstream,a/α,SPI,30,0.99913,0.00123,0.52207,0.16914,0.7606,0.26684 -P78042,Candida albicans,III,Bloodstream,a/α,LEE,30,0.03552,0.0203,0.01921,0.00289,0.02737,0.01663 -P78042,Candida albicans,III,Bloodstream,a/α,LEE,37,0.01518,0.00666,0.01649,0.00089,0.01583,0.0048 -P78042,Candida albicans,III,Bloodstream,a/α,SPI,37,0.56305,0.0685,0.42333,0.0852,0.49319,0.1042 -P78042,Candida albicans,III,Bloodstream,a/α,YPD,37,0.72383,0.0552,0.56955,0.07314,0.64669,0.10074 -P78042,Candida albicans,III,Bloodstream,a/α,YPD,30,0.87304,0.06833,0.72027,0.06147,0.79665,0.10029 -P78048,Candida albicans,I,Bloodstream,α/α,YPD,37,0.22056,0.1053,0.13292,0.07596,0.17674,0.10173 -P78048,Candida albicans,I,Bloodstream,α/α,LEE,30,0.07652,0.06388,0.05592,0.02566,0.06622,0.04975 -P78048,Candida albicans,I,Bloodstream,α/α,YPD,30,0.43189,0.09024,0.42998,0.08187,0.43094,0.08616 -P78048,Candida albicans,I,Bloodstream,α/α,SPI,37,0.20943,0.11239,0.23981,0.06562,0.22462,0.09327 -P78048,Candida albicans,I,Bloodstream,α/α,SPI,30,0.30174,0.0561,0.40948,0.13845,0.36639,0.12468 -P78048,Candida albicans,I,Bloodstream,α/α,LEE,37,0.38843,0.37503,0.21575,0.23362,0.30209,0.32414 -P87,Candida albicans,SA,Oral cavity,a/a,LEE,30,0.0844,0.05966,0.06683,0.05509,0.07561,0.05809 -P87,Candida albicans,SA,Oral cavity,a/a,YPD,37,0.88483,0.11788,0.82153,0.1236,0.85318,0.12485 -P87,Candida albicans,SA,Oral cavity,a/a,YPD,30,0.46065,0.26402,0.36627,0.22954,0.41346,0.25184 -P87,Candida albicans,SA,Oral cavity,a/a,SPI,37,0.82561,0.16137,0.83463,0.0373,0.83012,0.1172 -P87,Candida albicans,SA,Oral cavity,a/a,SPI,30,0.0666,0.04775,0.08923,0.0459,0.07792,0.04818 -P87,Candida albicans,SA,Oral cavity,a/a,LEE,37,0.13366,0.10189,0.221,0.22164,0.17733,0.17793 -P94015,Candida albicans,I,Bloodstream,a/a,YPD,30,0.49668,0.11005,0.64057,0.31092,0.56862,0.24406 -P94015,Candida albicans,I,Bloodstream,a/a,YPD,37,0.37129,0.08841,0.3182,0.09442,0.34233,0.09547 -P94015,Candida albicans,I,Bloodstream,a/a,LEE,37,0.38109,0.17592,0.3918,0.20351,0.38644,0.19029 -P94015,Candida albicans,I,Bloodstream,a/a,SPI,37,0.59941,0.28423,0.59199,0.18482,0.5957,0.23976 -P94015,Candida albicans,I,Bloodstream,a/a,SPI,30,0.73761,0.09084,0.86549,0.13464,0.80155,0.13144 -P94015,Candida albicans,I,Bloodstream,a/a,LEE,30,0.61161,0.19176,0.69291,0.15635,0.65226,0.17962 -SC5314,Candida albicans,I,Bloodstream,a/α,SPI,37,0.65525,0.03979,0.61975,0.0301,0.6375,0.03949 -SC5314,Candida albicans,I,Bloodstream,a/α,LEE,30,0.18746,0.20959,0.25806,0.31553,0.22276,0.27017 -SC5314,Candida albicans,I,Bloodstream,a/α,YPD,37,0.9248,0.01514,0.82914,0.12286,0.87697,0.09975 -SC5314,Candida albicans,I,Bloodstream,a/α,LEE,37,0.74106,0.08601,0.77784,0.21525,0.75945,0.16494 -SC5314,Candida albicans,I,Bloodstream,a/α,YPD,30,1.0,0.0,1.0,0.0,1.0,0.0 -SC5314,Candida albicans,I,Bloodstream,a/α,SPI,30,0.92653,0.07311,0.88006,0.05069,0.9033,0.06706 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,37,-,-,1.0,0.0,1.0,0.0 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,30,-,-,0.9317,0.06887,0.9317,0.06887 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,30,-,-,1.0,0.0,1.0,0.0 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,37,-,-,0.82,0.05612,0.82,0.05612 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,30,-,-,0.19679,0.05523,0.19679,0.05523 -SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,37,-,-,0.92551,0.01533,0.92551,0.01533 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,30,0.47941,0.04806,0.44671,0.05691,0.46306,0.05515 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,37,0.43027,0.05191,0.36889,0.06242,0.39958,0.06509 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,37,0.0854,0.00865,0.09276,0.02846,0.08908,0.02135 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,30,0.10327,0.05274,0.21018,0.06962,0.15672,0.08168 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,30,0.71322,0.05879,0.52849,0.0471,0.62085,0.10662 -WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,37,0.56838,0.05006,0.35209,0.05282,0.46024,0.11976 diff --git a/nc_adhesion_scores_sorted.csv b/nc_adhesion_scores_sorted.csv deleted file mode 100644 index 3a14edb6f308ac4056735ef0aad63b1f08a9cf22..0000000000000000000000000000000000000000 --- a/nc_adhesion_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -May Strain, Species, Soll Clade, Isolation Site, MTL Genotype, Media, Temperature (°C), MJD Phenotype Score, MJD Score St. Dev., RJF Phenotype Score, RJF Score St. Dev., Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores -"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.40436","0.05654","0.32061","0.08573",0.36248,0.08383,0.370045797093798 -"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.15948","0.05864","0.24497","0.06442",0.20222,0.07498,0.158534492998456 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.1274","0.01752","0.15739","0.04949",0.14239,0.04004,0.0795708007232509 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.31109","0.08324","0.24456","0.04805",0.27783,0.07567,0.258324644643588 -"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.11858","0.02737","0.19708","0.02142",0.15783,0.04631,0.0999485277620135 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.26181","0.07878","0.15512","0.07884",0.20847,0.09517,0.166783249086038 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.08135","0.02328","0.24382","0.09556",0.16258,0.10694,0.106217582388576 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.3105","0.08328","0.23153","0.09308",0.27102,0.09674,0.249336800010558 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.16264","0.04631","0.1451","0.0605",0.15387,0.05458,0.0947221159049215 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.10856","0.03489","0.21571","0.08742",0.16213,0.08544,0.10562367195027 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.2575","0.07505","0.44473","0.31395",0.35111,0.24671,0.355039660019269 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.18884","0.07321","0.20839","0.05588",0.19862,0.06585,0.153783209492009 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.17602","0.07286","0.20442","0.08652",0.19022,0.08123,0.142696881310298 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.20169","0.07452","0.28724","0.09075",0.24446,0.0934,0.21428288614077 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.23349","0.02271","0.1584","0.01762",0.19594,0.04269,0.150246142881653 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.32406","0.03246","0.37088","0.123",0.34747,0.09295,0.350235584473861 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.07391","0.06126","0.09194","0.07791",0.0821,0.06991,0 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.15916","0.0304","0.26966","0.1231",0.21441,0.10532,0.174622866871676 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.2034","0.0736","0.15831","0.04921",0.18085,0.06654,0.130330346183795 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.25116","0.11163","0.14601","0.04573",0.19858,0.1002,0.153730417453048 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.80052","0.24837","0.87906","0.13587",0.83979,0.204,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.17586","0.12293","0.39536","0.06949",0.28561,0.14838,0.26859269622141 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.09402","0.01649","0.08434","0.03859",0.08918,0.03007,0.00934419089601287 -"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.25164","0.11526","0.1191","0.06192",0.18537,0.1138,0.163377244386105 -"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.22801","0.12081","0.12552","0.10411",0.17677,0.12387,0.153298016970606 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.32246","0.028","0.37487","0.05085",0.34866,0.0487,0.354753644929914 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.10527","0.00646","0.03499","0.00405",0.07013,0.03555,0.0283155970184239 -"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.06624","0.0356","0.09794","0.07738",0.08209,0.06228,0.042332755145094 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.23132","0.05614","0.06809","0.02142",0.1497,0.09202,0.121571890675543 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.12591","0.02525","0.03691","0.02207",0.08141,0.05043,0.0415357929773569 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.64167","0.27566","0.43363","0.20496",0.53765,0.26423,0.576250527401434 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.10193","0.04626","0.05361","0.02397",0.07777,0.04405,0.0372697013735877 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.04006","0.02071","0.09068","0.04648",0.06537,0.04399,0.0227368618442642 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.15329","0.06512","0.15873","0.10503",0.15601,0.08742,0.128967230790868 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.13993","0.05973","0.07499","0.03658",0.10746,0.05922,0.0720664760208148 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.10765","0.05497","0.05846","0.0471",0.08306,0.05679,0.0434695982373072 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06247","0.02983","0.09085","0.04115",0.07666,0.03864,0.0359687778350757 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.16472","0.06514","0.08328","0.03977",0.124,0.0676,0.0914514087478318 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.14465","0.04937","0.05299","0.00119",0.09882,0.05762,0.0619403684778023 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.04013","0.03626","0.05182","0.04795",0.04597,0.04291,0 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.09","0.03182","0.0812","0.02335",0.0856,0.02825,0.0464464863344428 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.25647","0.21209","0.19529","0.2114",0.22588,0.21394,0.210855093525854 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.09922","0.02733","0.2285","0.20024",0.16386,0.15684,0.13816745581548 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.84961","0.19931","0.9488","0.0882",0.89921,0.1619,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.45062","0.23578","0.52365","0.17176",0.48713,0.20948,0.51704092635132 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.11826","0.07866","0.08255","0.02993",0.10041,0.06213,0.0638038535464816 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.03713","0.03013","0.15927","0.0677",0.0982,0.08047,0.0690805864677548 -"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.1376","0.10131","0.07287","0.01717",0.10524,0.07954,0.0797106920138312 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.2137","0.09117","0.11156","0.02141",0.16263,0.08362,0.166367191628792 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.04399","0.02055","0.13808","0.04951",0.09103,0.06041,0.0582541863590379 -"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.06118","0.0323","0.04371","0.0123",0.05245,0.02595,0 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.07587","0.05797","0.11829","0.06029",0.09708,0.06283,0.0673894333126972 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.10218","0.07352","0.0792","0.05128",0.09069,0.06442,0.057740800579824 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.10666","0.05126","0.21475","0.14279",0.1607,0.12012,0.163452972352666 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.23123","0.12379","0.18296","0.07651",0.2071,0.10569,0.233515031633624 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09138","0.07086","0.09668","0.03768",0.09403,0.05681,0.0627840608815136 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.31698","0.29241","0.08156","0.0525",0.19927,0.2408,0.221692059129962 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.20847","0.0641","0.02556","0.00252",0.11701,0.10209,0.0974828997236777 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.15561","0.12283","0.19498","0.13731",0.1753,0.13175,0.185498361695381 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.20962","0.07886","0.18925","0.05945",0.19944,0.07057,0.221948752019569 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.03226","0.01597","0.12031","0.02159",0.07629,0.04794,0.0359974028719404 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.06731","0.05024","0.13541","0.05233",0.10136,0.06157,0.073852054298096 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.76981","0.26568","0.43608","0.28171",0.58777,0.32092,0.808310809790569 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.24403","0.12318","0.07548","0.0362",0.15975,0.12387,0.162018512087215 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.09296","0.05803","0.23065","0.16411",0.16181,0.14103,0.165129025925982 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.09186","0.08274","0.07591","0.02051",0.08316,0.05835,0.0463708155284099 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.51867","0.36484","0.42939","0.20735",0.47403,0.30007,0.636568167061772 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.90286","0.07192","0.52658","0.05493",0.71472,0.19872,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.07615","0.02668","0.10551","0.01848",0.09083,0.02724,0.0579521947242061 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.16356","0.08142","0.17102","0.04669",0.16729,0.06647,0.177445193004016 -"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.14409","0.07049","0.06683","0.05303",0.10546,0.07337,0.109603019596656 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.11518","0.02917","0.02711","0.0122",0.07115,0.04939,0.0719568127455068 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.13688","0.03178","0.0628","0.01808",0.09984,0.04517,0.10343654677522 -"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.00753","0.0075","0.00427","0.0029",0.00557,0.00548,0 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.16561","0.08857","0.08871","0.06018",0.12716,0.08492,0.133413065900064 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.00339","0.00277","0.02131","0.00775",0.01414,0.01078,0.00940332243411091 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.03031","0.01226","0.06998","0.04102",0.05014,0.03619,0.0489038600803178 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.08762","0.05006","0.06852","0.02908",0.07807,0.04203,0.0795496938708332 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.1018","0.10917","0.10321","0.05984",0.1025,0.08804,0.106355197612412 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.06999","0.10789","0.00236","0.0023",0.03617,0.08346,0.0335754569992758 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.33427","0.343","0.31403","0.21948",0.32415,0.28812,0.349557813425794 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.11189","0.08451","0.13228","0.05773",0.12209,0.07309,0.12785007351489 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.16396","0.09244","0.10888","0.07948",0.13642,0.0905,0.143573481972394 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.06425","0.01249","0.05389","0.05717",0.05907,0.0417,0.0587021878908907 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.02649","0.01886","0.07213","0.03876",0.05388,0.03929,0.0530075270468959 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.18256","0.12145","0.13611","0.13072",0.15934,0.12829,0.168722157607145 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.06098","0.02017","0.12882","0.12385",0.0949,0.09499,0.0980161952204349 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.08774","0.11834","0.11535","0.0612",0.10154,0.09521,0.105301849941846 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.50462","0.36976","0.25544","0.19731",0.38003,0.32148,0.410871425749961 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.4998","0.11333","0.22974","0.12861",0.36477,0.18145,0.394127586736597 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"1.0","0.0","0.8339","0.1185",0.91695,0.11797,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.17179","0.02492","0.13819","0.07767",0.15499,0.06008,0.163949175974895 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.39405","0.04549","0.56385","0.08526",0.47895,0.10898,0.0281911738154806 -"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.46491","0.11488","0.48053","0.09357",0.47272,0.10506,0.0121224626653942 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.61432","0.0298","0.66708","0.08144",0.6407,0.06675,0.445384436821336 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.50564","0.08554","0.62897","0.09409",0.56731,0.10903,0.256093471924892 -"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.59612","0.10421","0.55963","0.10643",0.57788,0.10689,0.283356116685151 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.65115","0.19124","0.54811","0.15243",0.59963,0.18044,0.339454747104795 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.70757","0.21187","0.88699","0.11268",0.79728,0.19194,0.849242990895257 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.79183","0.22266","0.68098","0.15271",0.73641,0.1988,0.692244203141523 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.55325","0.13944","0.55712","0.12697",0.55519,0.13336,0.224832993732429 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.52573","0.08604","0.49517","0.10916",0.51045,0.09946,0.109437466147378 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.6314","0.11966","0.58915","0.17981",0.61028,0.15418,0.366923731655103 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.47863","0.04573","0.5838","0.02883",0.53121,0.06501,0.162982641665162 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.47489","0.13595","0.50155","0.0844",0.48822,0.11393,0.052100796987439 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.48031","0.11021","0.56073","0.10101",0.52052,0.1131,0.135410487219829 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.51937","0.13251","0.72099","0.07673",0.62018,0.14794,0.392458280673699 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.24004","0.05309","0.696","0.15599",0.46802,0.25603,0 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.48709","0.06416","0.50157","0.10367",0.49499,0.08823,0.069562301720358 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.51096","0.05616","0.45124","0.12315",0.4811,0.10026,0.0337365556730547 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.56296","0.15388","0.56255","0.10673",0.56276,0.13242,0.244357896365841 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.54269","0.17894","0.61894","0.10128",0.58081,0.15031,0.290913311495706 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.77746","0.16655","0.93399","0.10599",0.85573,0.16004,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.41339","0.02825","0.64693","0.03716",0.50681,0.11883,0.100049005700137 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.65838","0.12181","0.7831","0.1131",0.72074,0.13305,0.651827396765624 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.36551","0.10623","0.5587","0.02997",0.48142,0.11837,0.189534327489029 -"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.43244","0.03875","0.60468","0.09646",0.51856,0.11322,0.266778977142738 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.78417","0.17975","0.65753","0.12574",0.72085,0.16754,0.687506499448847 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.46326","0.07061","0.51721","0.08596",0.49024,0.08315,0.207878371914062 -"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.50838","0.06669","0.63416","0.10398",0.57127,0.10763,0.376406480730434 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.50186","0.17053","0.63349","0.14099",0.57366,0.16839,0.381377259208419 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.51884","0.04168","0.50801","0.02032",0.51342,0.03323,0.256088683679624 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.4938","0.12506","0.52802","0.15591",0.51091,0.14236,0.250868326365924 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.40261","0.11039","0.40341","0.07045",0.40301,0.0926,0.0264553565857614 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.44092","0.08319","0.47094","0.03778",0.45593,0.06632,0.136519623135958 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.47157","0.135","0.52886","0.18005",0.50022,0.16169,0.228635011751003 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.54455","0.22942","0.51176","0.10306",0.52816,0.1786,0.286745283999917 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.44623","0.12472","0.51861","0.18453",0.48242,0.1616,0.191614151119985 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.52239","0.13155","0.45116","0.07877",0.48678,0.11412,0.200682182150954 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.3455","0.07704","0.48618","0.11849",0.41584,0.12221,0.0531394937709282 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.29302","0.04316","0.48757","0.16887",0.39029,0.15701,0 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.45448","0.11775","0.45207","0.06482",0.45328,0.09506,0.131008090513924 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.37452","0.08104","0.543","0.1719",0.45876,0.1586,0.142405524011564 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.47471","0.09132","0.63763","0.15857",0.55617,0.1529,0.345001143902997 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.51085","0.12898","0.46492","0.20497",0.48788,0.17278,0.202969988145005 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.82542","0.1505","0.90916","0.09297",0.8711,0.12942,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.23814","0.19592","0.73597","0.13796",0.48706,0.30111,0.201264532767621 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.72552","0.15428","0.60079","0.06865",0.66316,0.13471,0.56752147417899 diff --git a/nc_biofilm_scores_sorted.csv b/nc_biofilm_scores_sorted.csv deleted file mode 100644 index 63eb56e1479c1c1b4b6c31a29711294da16a568e..0000000000000000000000000000000000000000 --- a/nc_biofilm_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -May Strain, Species, Soll Clade, Isolation Site, Media, Temperature (°C), Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores -"12C","Candida albicans","I","Oral cavity","LEE",30,0.095333333,0.020572365,0.313043477483122 -"19F","Candida albicans","I","Vagina","LEE",30,0.116333333,0.03058322,0.469565216224683 -"529L","Candida albicans","529L","Oral cavity","LEE",30,0.172138889,0.029546325,0.885507247489423 -"GC75","Candida albicans","SA","Oral cavity","LEE",30,0.142,0.022211108,0.660869566059951 -"L26","Candida albicans","I","Vagina","LEE",30,0.092666667,0.021644219,0.293167706103931 -"P34048","Candida albicans","III","Bloodstream","LEE",30,0.1875,0.013313527,1 -"P37005","Candida albicans","I","Oral cavity","LEE",30,0.094333333,0.013421583,0.305590061352571 -"P37037","Candida albicans","I","Oral cavity","LEE",30,0.102166667,0.004633813,0.363975159344161 -"P37039","Candida albicans","I","Bloodstream","LEE",30,0.08,0.014302292,0.198757765965819 -"P57055","Candida albicans","III","Bloodstream","LEE",30,0.122666667,0.01060922,0.516770190020447 -"P57072","Candida albicans","II","Bloodstream","LEE",30,0.142833333,0.03977611,0.667080743684271 -"P60002","Candida albicans","SA","Bloodstream","LEE",30,0.130333333,0.023534844,0.57391304205239 -"P75010","Candida albicans","E","Bloodstream","LEE",30,0.100833333,0.028121265,0.35403726620115 -"P75016","Candida albicans","SA","Bloodstream","LEE",30,0.134166667,0.013973189,0.602484475521778 -"P75063","Candida albicans","SA","Bloodstream","LEE",30,0.097833333,0.028726681,0.331677017809498 -"P76055","Candida albicans","II","Bloodstream","LEE",30,0.099166667,0.022549329,0.34161491095251 -"P76067","Candida albicans","II","Bloodstream","LEE",30,0.0745,0.026060293,0.157763977247791 -"P78042","Candida albicans","III","Bloodstream","LEE",30,0.1085,0.025751483,0.411180125686509 -"P78048","Candida albicans","I","Bloodstream","LEE",30,0.130666667,0.009546669,0.576397519064851 -"P87","Candida albicans","SA","Oral cavity","LEE",30,0.1075,0.013503086,0.403726709555958 -"P94015","Candida albicans","I","Bloodstream","LEE",30,0.053333333,0.006497863,0 -"SC5314","Candida albicans","I","Bloodstream","LEE",30,0.136166667,0.015614274,0.617391307782879 -"WO-1","Candida albicans","WO-1","Bloodstream","LEE",30,0.085166667,0.022086321,0.237267085124802 -"12C","Candida albicans","I","Oral cavity","LEE",37,0.070166667,0.007717225,0.3673647486911 -"19F","Candida albicans","I","Vagina","LEE",37,0.0315,0.035251478,0.164921465968586 -"529L","Candida albicans","529L","Oral cavity","LEE",37,0.029566667,0.004127953,0.154799303664921 -"GC75","Candida albicans","SA","Oral cavity","LEE",37,0.036,0.019735051,0.18848167539267 -"L26","Candida albicans","I","Vagina","LEE",37,0.0385,0.010011105,0.201570680628272 -"P34048","Candida albicans","III","Bloodstream","LEE",37,0.067833333,0.009994443,0.355148340314136 -"P37005","Candida albicans","I","Oral cavity","LEE",37,0.043,0.009788031,0.225130890052356 -"P37037","Candida albicans","I","Oral cavity","LEE",37,0.116166667,0.089786166,0.608202445026178 -"P37039","Candida albicans","I","Bloodstream","LEE",37,0.032666667,0.007371115,0.171029670157068 -"P57055","Candida albicans","III","Bloodstream","LEE",37,0.0255,0.008205689,0.133507853403141 -"P57072","Candida albicans","II","Bloodstream","LEE",37,0.093166667,0.01338739,0.487783596858639 -"P60002","Candida albicans","SA","Bloodstream","LEE",37,0.093,0.056799844,0.486910994764398 -"P75010","Candida albicans","E","Bloodstream","LEE",37,0.0405,0.009616248,0.212041884816754 -"P75016","Candida albicans","SA","Bloodstream","LEE",37,0.054166667,0.025584826,0.283595115183246 -"P75063","Candida albicans","SA","Bloodstream","LEE",37,0.031333333,0.010563301,0.164048863874346 -"P76055","Candida albicans","II","Bloodstream","LEE",37,0.087833333,0.047346242,0.459860382198953 -"P76067","Candida albicans","II","Bloodstream","LEE",37,0,0.015227898,0 -"P78042","Candida albicans","III","Bloodstream","LEE",37,0.066833333,0.017062793,0.349912738219895 -"P78048","Candida albicans","I","Bloodstream","LEE",37,0.038666667,0.007289643,0.202443282722513 -"P87","Candida albicans","SA","Oral cavity","LEE",37,0.033666667,0.007559027,0.176265272251309 -"P94015","Candida albicans","I","Bloodstream","LEE",37,0.069666667,0.007243771,0.364746947643979 -"SC5314","Candida albicans","I","Bloodstream","LEE",37,0.191,0.035179303,1 -"WO-1","Candida albicans","WO-1","Bloodstream","LEE",37,0.027,0.012212243,0.141361256544503 -"12C","Candida albicans","I","Oral cavity","SPI",30,0.201,0.017663522,0.666471278624234 -"19F","Candida albicans","I","Vagina","SPI",30,0.288833333,0.108809849,0.975381008177469 -"529L","Candida albicans","529L","Oral cavity","SPI",30,0.228333333,0.020055479,0.762602578854165 -"GC75","Candida albicans","SA","Oral cavity","SPI",30,0.191666667,0.02208066,0.633645957366525 -"L26","Candida albicans","I","Vagina","SPI",30,0.240166667,0.011728408,0.804220400708348 -"P34048","Candida albicans","III","Bloodstream","SPI",30,0.2645,0.018282505,0.889800704442908 -"P37005","Candida albicans","I","Oral cavity","SPI",30,0.271833333,0.012432037,0.915592028037036 -"P37037","Candida albicans","I","Oral cavity","SPI",30,0.193,0.018015425,0.638335287969912 -"P37039","Candida albicans","I","Bloodstream","SPI",30,0.233166667,0.018697148,0.779601408885816 -"P57055","Candida albicans","III","Bloodstream","SPI",30,0.243166667,0.011710631,0.814771397203718 -"P57072","Candida albicans","II","Bloodstream","SPI",30,0.224166667,0.099432417,0.747948419399705 -"P60002","Candida albicans","SA","Bloodstream","SPI",30,0.200666667,0.012569805,0.665298946852637 -"P75010","Candida albicans","E","Bloodstream","SPI",30,0.251,0.129727492,0.842321220213741 -"P75016","Candida albicans","SA","Bloodstream","SPI",30,0.187333333,0.014161764,0.618405626750769 -"P75063","Candida albicans","SA","Bloodstream","SPI",30,0.2305,0.118026833,0.770222744162043 -"P76055","Candida albicans","II","Bloodstream","SPI",30,0.185166667,0.023723523,0.610785464959889 -"P76067","Candida albicans","II","Bloodstream","SPI",30,0.229,0.090368997,0.764947245914358 -"P78042","Candida albicans","III","Bloodstream","SPI",30,0.263666667,0.015362291,0.886869873255416 -"P78048","Candida albicans","I","Bloodstream","SPI",30,0.227,0.010657548,0.757913248250778 -"P87","Candida albicans","SA","Oral cavity","SPI",30,0.198333333,0.018568941,0.65709261390046 -"P94015","Candida albicans","I","Bloodstream","SPI",30,0.0115,0.003947573,0 -"SC5314","Candida albicans","I","Bloodstream","SPI",30,0.295833333,0.01332604,1 -"WO-1","Candida albicans","WO-1","Bloodstream","SPI",30,0.182333333,0.038016078,0.600820632591818 -"12C","Candida albicans","I","Oral cavity","SPI",37,0.091333333,0.009358597,0.166666665829146 -"19F","Candida albicans","I","Vagina","SPI",37,0.158166667,0.156771242,0.33458961557789 -"529L","Candida albicans","529L","Oral cavity","SPI",37,0.047,0.017198999,0.0552763819095477 -"GC75","Candida albicans","SA","Oral cavity","SPI",37,0.1405,0.044180187,0.290201005025126 -"L26","Candida albicans","I","Vagina","SPI",37,0.189666667,0.084082136,0.413735344221106 -"P34048","Candida albicans","III","Bloodstream","SPI",37,0.099666667,0.012829004,0.187604690954774 -"P37005","Candida albicans","I","Oral cavity","SPI",37,0.140166667,0.016079663,0.289363484924623 -"P37037","Candida albicans","I","Oral cavity","SPI",37,0.025,0.028732966,0 -"P37039","Candida albicans","I","Bloodstream","SPI",37,0.081333333,0.017240134,0.141541037688442 -"P57055","Candida albicans","III","Bloodstream","SPI",37,0.2765,0.062311048,0.631909547738694 -"P57072","Candida albicans","II","Bloodstream","SPI",37,0.149166667,0.081202764,0.311976550251256 -"P60002","Candida albicans","SA","Bloodstream","SPI",37,0.262,0.128355842,0.595477386934673 -"P75010","Candida albicans","E","Bloodstream","SPI",37,0.309833333,0.112417995,0.715661640703518 -"P75016","Candida albicans","SA","Bloodstream","SPI",37,0.1315,0.052787046,0.267587939698493 -"P75063","Candida albicans","SA","Bloodstream","SPI",37,0.127333333,0.049466319,0.257118927135678 -"P76055","Candida albicans","II","Bloodstream","SPI",37,0.1255,0.041322579,0.25251256281407 -"P76067","Candida albicans","II","Bloodstream","SPI",37,0.252666667,0.080844329,0.572026801507538 -"P78042","Candida albicans","III","Bloodstream","SPI",37,0.265666667,0.060271607,0.604690118090452 -"P78048","Candida albicans","I","Bloodstream","SPI",37,0.0675,0.009706813,0.10678391959799 -"P87","Candida albicans","SA","Oral cavity","SPI",37,0.423,0.023212185,1 -"P94015","Candida albicans","I","Bloodstream","SPI",37,0.033833333,0.008698659,0.0221943040201005 -"SC5314","Candida albicans","I","Bloodstream","SPI",37,0.2955,0.018147543,0.67964824120603 -"WO-1","Candida albicans","WO-1","Bloodstream","SPI",37,0.080833333,0.038594761,0.140284756281407 -"12C","Candida albicans","I","Oral cavity","YPD",30,0.687833333,0.051020965,0.64463579208251 -"19F","Candida albicans","I","Vagina","YPD",30,0.552333333,0.026159766,0.455434023230565 -"529L","Candida albicans","529L","Oral cavity","YPD",30,0.525833333,0.121769477,0.41843146327059 -"GC75","Candida albicans","SA","Oral cavity","YPD",30,0.382666667,0.021959559,0.218524552216453 -"L26","Candida albicans","I","Vagina","YPD",30,0.578,0.052860666,0.491272981141515 -"P34048","Candida albicans","III","Bloodstream","YPD",30,0.4895,0.046867722,0.367698394105374 -"P37005","Candida albicans","I","Oral cavity","YPD",30,0.825666667,0.018649546,0.837095648905837 -"P37037","Candida albicans","I","Oral cavity","YPD",30,0.525666667,0.050334437,0.418198743698579 -"P37039","Candida albicans","I","Bloodstream","YPD",30,0.761166667,0.03512715,0.747032814286277 -"P57055","Candida albicans","III","Bloodstream","YPD",30,0.384833333,0.014314911,0.221549917823179 -"P57072","Candida albicans","II","Bloodstream","YPD",30,0.522666667,0.051629019,0.414009774646507 -"P60002","Candida albicans","SA","Bloodstream","YPD",30,0.312,0.133677057,0.119851058524413 -"P75010","Candida albicans","E","Bloodstream","YPD",30,0.549,0.043755635,0.450779613638147 -"P75016","Candida albicans","SA","Bloodstream","YPD",30,0.3835,0.076235199,0.219688154265477 -"P75063","Candida albicans","SA","Bloodstream","YPD",30,0.481333333,0.018397615,0.35629508899818 -"P76055","Candida albicans","II","Bloodstream","YPD",30,0.585333333,0.059951833,0.501512682803363 -"P76067","Candida albicans","II","Bloodstream","YPD",30,0.547666667,0.272198253,0.448917850080445 -"P78042","Candida albicans","III","Bloodstream","YPD",30,0.616333333,0.050002222,0.544798696341446 -"P78048","Candida albicans","I","Bloodstream","YPD",30,0.7795,0.022375582,0.772632069139057 -"P87","Candida albicans","SA","Oral cavity","YPD",30,0.555833333,0.046129046,0.460321153791316 -"P94015","Candida albicans","I","Bloodstream","YPD",30,0.226166667,0.022637849,0 -"SC5314","Candida albicans","I","Bloodstream","YPD",30,0.942333333,0.112602546,1 -"WO-1","Candida albicans","WO-1","Bloodstream","YPD",30,0.3555,0.085379057,0.180591109779466 -"12C","Candida albicans","I","Oral cavity","YPD",37,0.311,0.041115353,0.235687168109339 -"19F","Candida albicans","I","Vagina","YPD",37,0.527,0.176534935,0.432498102050114 -"529L","Candida albicans","529L","Oral cavity","YPD",37,0.222833333,0.025597309,0.155353075170843 -"GC75","Candida albicans","SA","Oral cavity","YPD",37,0.739,0.154473748,0.625664389066059 -"L26","Candida albicans","I","Vagina","YPD",37,0.200166667,0.004818944,0.134700076537585 -"P34048","Candida albicans","III","Bloodstream","YPD",37,0.186833333,0.046366894,0.12255125284738 -"P37005","Candida albicans","I","Oral cavity","YPD",37,0.476833333,0.064052062,0.386788154897494 -"P37037","Candida albicans","I","Oral cavity","YPD",37,0.092833333,0.039630235,0.0369020501138952 -"P37039","Candida albicans","I","Bloodstream","YPD",37,0.556833333,0.214545579,0.459681093394078 -"P57055","Candida albicans","III","Bloodstream","YPD",37,0.442,0.199082688,0.355049354897494 -"P57072","Candida albicans","II","Bloodstream","YPD",37,0.999,0.15214622,0.862566439179955 -"P60002","Candida albicans","SA","Bloodstream","YPD",37,0.834,0.229289967,0.712224753530752 -"P75010","Candida albicans","E","Bloodstream","YPD",37,0.148666667,0.063838337,0.08777524738041 -"P75016","Candida albicans","SA","Bloodstream","YPD",37,0.055333333,0.025249862,0.00273348519362186 -"P75063","Candida albicans","SA","Bloodstream","YPD",37,0.230666667,0.085450603,0.162490509339408 -"P76055","Candida albicans","II","Bloodstream","YPD",37,1.149833333,0.061313403,1 -"P76067","Candida albicans","II","Bloodstream","YPD",37,0.515833333,0.261253176,0.422323462414579 -"P78042","Candida albicans","III","Bloodstream","YPD",37,0.330333333,0.219723817,0.253302961275626 -"P78048","Candida albicans","I","Bloodstream","YPD",37,0.285666667,0.064599837,0.212604404555809 -"P87","Candida albicans","SA","Oral cavity","YPD",37,0.125333333,0.067227846,0.0665148063781321 -"P94015","Candida albicans","I","Bloodstream","YPD",37,0.052333333,0.007932003,0 -"SC5314","Candida albicans","I","Bloodstream","YPD",37,1.090166667,0.034047353,0.945634017312073 -"WO-1","Candida albicans","WO-1","Bloodstream","YPD",37,0.178166667,0.123078566,0.114654518451025 diff --git a/nc_filamentation_scores_sorted.csv b/nc_filamentation_scores_sorted.csv deleted file mode 100644 index 487fc8e2c7cf0e83f2211bd6c46a3fef5de0801b..0000000000000000000000000000000000000000 --- a/nc_filamentation_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -May Strain, Species, Soll Clade, Isolation Site, MTL Genotype, Media, Temperature (°C), MJD Phenotype Score, MJD Score St. Dev., RJF Phenotype Score, RJF Score St. Dev., Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores -"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.04099","0.04034",-0.08852,0.00525,-0.06476,0.03731,0.836297385839406 -"19F","Candida albicans","I","Vagina","α/α","LEE",30,"-0.03515","0.0075",-0.06619,0.06579,-0.05067,0.04932,0.883399077355085 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"-0.02499","0.05624",-0.06038,0.05067,-0.04269,0.05638,0.910075549909741 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"-0.1212","0.04089",-0.50867,0.11858,-0.31493,0.21307,0 -"L26","Candida albicans","I","Vagina","a/a","LEE",30,"-0.04675","0.03686",-0.41031,0.36015,-0.22853,0.31397,0.288827973524102 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.13806","0.25482",-0.19441,0.21593,-0.16624,0.23785,0.497058233602995 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.27506","0.35284",-0.05103,0.08298,-0.16304,0.27971,0.50775556595574 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"-0.01747","0.02972",-0.0878,0.02925,-0.05264,0.04589,0.876813532125426 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.0126","0.05173",-0.19819,0.31891,-0.1054,0.24658,0.700441264959551 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.04046","0.05759",-0.31142,0.36746,-0.17594,0.29585,0.464631944908738 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"-0.23778","0.20026",-0.02885,0.06863,-0.13332,0.18254,0.607107040181855 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"-0.09777","0.05773",-0.08857,0.0586,-0.09317,0.05835,0.741325132045196 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"-0.1085","0.05142",-0.1093,0.04122,-0.1089,0.0466,0.688741057698736 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"-0.1514","0.10162",-0.12686,0.0782,-0.13913,0.0915,0.587684696128903 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"-0.00565","0.04619",-0.03542,0.08033,-0.02053,0.06719,0.984154576452497 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.01368","0.06578",-0.01791,0.05565,-0.01579,0.06096,1 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.08998","0.07848",-0.06208,0.08878,-0.0773,0.08447,0.794377214682089 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.02409","0.06358",-0.06982,0.01683,-0.04696,0.05182,0.895801297051548 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"-0.04377","0.05186",-0.19432,0.22102,-0.11905,0.1773,0.654810456642375 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"-0.18624","0.26727",-0.10737,0.1309,-0.14681,0.2141,0.562011098482316 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"-0.19419","0.28298",-0.19917,0.27956,-0.19668,0.28129,0.395299859597513 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.01106","0.08714",-0.09,0.01917,-0.05053,0.07442,0.883867085645517 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"-0.03575","0.06478",-0.26474,0.38331,-0.15025,0.29778,0.550511466203116 -"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.27621","0.27175",-0.51195,0.25542,-0.39408,0.28885,0.234671065483038 -"19F","Candida albicans","I","Vagina","α/α","LEE",37,"-0.08923","0.03871",-0.27054,0.18985,-0.17988,0.16428,0.699585440496603 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"-0.172","0.03372",-0.05364,0.05817,-0.11282,0.07591,0.845137065092353 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"-0.10733","0.12608",-0.32594,0.13508,-0.21664,0.17035,0.619799014607254 -"L26","Candida albicans","I","Vagina","a/a","LEE",37,"-0.18102","0.15419",-0.82338,0.02109,-0.5022,0.33951,0 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.07721","0.06021",-0.56364,0.23517,-0.32043,0.29769,0.394526078180279 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.05025","0.07355",-0.03269,0.04913,-0.04147,0.06316,1 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"-0.1874","0.20732",-0.02009,0.05022,-0.10374,0.17248,0.864844920018232 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.06909","0.06682",-0.17973,0.24474,-0.12441,0.18773,0.819981333970004 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.09342","0.13074",-0.08379,0.04193,-0.08861,0.09721,0.897684109999349 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"-0.25818","0.29755",-0.377,0.26048,-0.31759,0.28587,0.400690209016127 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"-0.10764","0.08043",-0.09909,0.04194,-0.10337,0.06428,0.865647993401775 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"-0.09211","0.0736",-0.15669,0.08917,-0.1244,0.0879,0.820003038656046 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"-0.06784","0.073",-0.07824,0.03059,-0.07304,0.05621,0.931478306166301 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"-0.51613","0.27766",-0.01219,0.00601,-0.26416,0.31946,0.516658346537017 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.128","0.02438",-0.25605,0.13317,-0.19203,0.11517,0.673214246955918 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.06589","0.06482",-0.14899,0.09736,-0.10744,0.09255,0.856814186182797 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.08498","0.02669",-0.1091,0.02424,-0.09704,0.0282,0.879387059666182 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"-0.2315","0.11715",-0.17935,0.13163,-0.20542,0.1273,0.64415167234606 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"-0.24112","0.19811",-0.1087,0.06223,-0.17491,0.16107,0.710372669459336 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"-0.27706","0.28252",-0.0714,0.05421,-0.17423,0.22793,0.711848588110173 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.11099","0.06829",-0.08615,0.00656,-0.09857,0.05007,0.876066242701799 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"-0.38543","0.26521",-0.34904,0.30265,-0.36724,0.28513,0.292926442819005 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.2469","0.01296",0.39794,0.17955,0.32242,0.14801,0.0865159461569008 -"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.32672","0.0526",0.2889,0.00079,0.30781,0.04173,0.0765127966368603 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.76397","0.3195",0.35123,0.14109,0.5576,0.32184,0.247538581620497 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.28803","0.12367",0.28736,0.02878,0.2877,0.08979,0.0627439166335739 -"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.1824","0.03441",0.28318,0.05332,0.23279,0.06747,0.0251482328453859 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34379","0.15011",0.24816,0.06084,0.29598,0.12411,0.0684130527065332 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.22349","0.06303",0.19419,0.03096,0.20884,0.05177,0.00875018828652415 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.42458","0.16919",0.20811,0.03882,0.31635,0.16365,0.0823599490599367 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.17708","0.03416",0.25065,0.05002,0.21387,0.05646,0.01219411998302 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34398","0.28243",0.23475,0.03919,0.28936,0.20889,0.0638804825612445 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.27147","0.09582",0.18553,0.05762,0.2285,0.08998,0.0222109630684541 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.28738","0.09165",0.41674,0.36199,0.35206,0.27185,0.106809810070248 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.30983","0.13422",0.37159,0.34613,0.34071,0.26432,0.0990387117093678 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.27907","0.12028",0.28337,0.1203,0.28122,0.12031,0.0583072014460405 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.23418","0.04655",0.24566,0.07532,0.23992,0.06287,0.030029988908212 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.27443","0.13986",0.16728,0.03279,0.22086,0.11484,0.0169800210880907 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"1.96451","1.08699",1.40001,0.48797,1.6566,0.86369,1 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.48766","0.13675",0.38665,0.0365,0.43716,0.1121,0.165075930820108 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.22606","0.10838",0.29909,0.08999,0.26257,0.10609,0.0455379517164884 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.1748","0.01382",0.20668,0.05681,0.19606,0.04941,0 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.94036","0.56363",1.02914,0.41858,0.98475,0.49841,0.539998904514769 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.5454","0.12933",0.47513,0.15885,0.51027,0.14905,0.215132759116491 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"1.36474","0.92771",0.43757,0.2214,0.90116,0.81838,0.482766647952127 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.36402","0.11843",0.46793,0.3715,0.42637,0.30168,0.235425285744338 -"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.36736","0.15235",0.3179,0.00507,0.34263,0.11059,0.117986115980646 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.441","0.16246",0.62106,0.24005,0.53103,0.22386,0.382203211555992 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.22402","0.02924",0.35762,0.06411,0.29082,0.08333,0.0453264146974266 -"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.14651","0.01592",0.47404,0.16117,0.34302,0.20355,0.118533062197602 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.40667","0.19144",0.33579,0.15025,0.37123,0.17569,0.158095505224038 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.37134","0.084",0.21147,0.05498,0.27542,0.10378,0.0237290512586775 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.57556","0.08937",0.47688,0.29484,0.52622,0.22336,0.375457541546876 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.22933","0.06008",0.28768,0.06033,0.2585,0.06691,0 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.37073","0.21586",0.30106,0.08404,0.3359,0.16746,0.108547787672674 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.28902","0.08601",0.47858,0.20827,0.37518,0.18072,0.163635088703457 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.38247","0.11911",0.33901,0.11068,0.36074,0.11701,0.143384054414136 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.2752","0.04497",0.33501,0.10986,0.3051,0.08911,0.0653530607951756 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.37552","0.15942",0.36015,0.1474,0.36784,0.15372,0.153341280415118 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.25639","0.0595",0.32908,0.09455,0.29274,0.08695,0.0480190729962836 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.47839","0.23091",0.24837,0.08096,0.36338,0.20776,0.147086459575065 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.48725","0.12839",0.37463,0.0877,0.43094,0.12353,0.241834373466096 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.36157","0.11721",0.31645,0.0139,0.33901,0.08645,0.112909333146343 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.28549","0.07521",0.24891,0.06627,0.2672,0.0732,0.0122011079166959 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.78745","0.32976",0.78296,0.27819,0.78521,0.30508,0.738671902391137 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.41015","0.29012",0.44398,0.20491,0.42707,0.25173,0.236406984082463 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.67101","0.2304",0.50393,0.16271,0.58747,0.21624,0.46135614613281 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"1.22802","0.23879",0.71508,0.44828,0.97155,0.44132,1 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.24524","0.14067",0.21748,0.09501,0.23136,0.12083,0.574409139104559 -"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.25653","0.15647",0.21744,0.10667,0.23699,0.13532,0.593665560762048 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.10265","0.05696",0.13797,0.02159,0.12031,0.04655,0.194582207476827 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.143","0.06843",0.02702,0.03582,0.08501,0.07966,0.0738447857167288 -"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.22953","0.02028",0.1358,0.08309,0.18267,0.07651,0.407873584841126 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.0484","0.052",0.07903,0.0754,0.06372,0.06655,0.00102609706878269 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.08293","0.07678",0.05511,0.03795,0.06902,0.06214,0.0191538119506105 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.18345","0.18786",0.17751,0.13348,0.18048,0.16298,0.400383076239012 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.15024","0.12527",0.093,0.10566,0.12162,0.11937,0.199062831343845 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.11791","0.01678",0.07271,0.04972,0.09531,0.04345,0.109074118411602 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.1332","0.08506",0.06669,0.09986,0.09995,0.09854,0.124944419742108 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.08737","0.11095",0.03946,0.09158,0.06342,0.10451,0 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.12261","0.07198",0.18336,0.03999,0.15298,0.06567,0.306324178267264 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.10861","0.11907",0.12807,0.13663,0.11834,0.12852,0.187844170058487 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.0826","0.09144",0.04716,0.02888,0.06488,0.07008,0.00499367240140914 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.18004","0.16851",0.25785,0.09205,0.21895,0.14124,0.531962923692581 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46645","0.09227",0.26357,0.13443,0.35579,0.1547,1 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.16136","0.18463",0.20492,0.08911,0.18314,0.14659,0.409481136915552 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.06269","0.04443",0.06479,0.08043,0.06374,0.06498,0.00109450354003489 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.0996","0.09517",0.1064,0.11316,0.103,0.10461,0.135376406608065 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.14206","0.11834",0.074,0.20584,0.10803,0.1713,0.152580634127988 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.28722","0.09674",0.18579,0.15501,0.23651,0.1388,0.592023805451996 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.15643","0.00544",0.11431,0.09245,0.13537,0.06879,0.246092280329719 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.14053","0.01972",0.15817,0.03985,0.15111,0.0344,0.591392020815265 -"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.07693","0.05958",0.01134,0.07934,0.04413,0.07745,0.359431916738942 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.07727","0.04461",0.19281,0.05065,0.13504,0.07494,0.55654813529922 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.12178","0.04529",0.05406,0.0492,0.08792,0.05816,0.454379878577624 -"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.4013","0.31601",0.09973,0.04673,0.30077,0.29583,0.915893321769297 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.24187","0.38409",0.13585,0.14936,0.19643,0.31083,0.689657415437988 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.40995","0.30997",0.1583,0.13341,0.32607,0.28993,0.970750216825672 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.02876","0.06888",0.15137,0.05448,0.09882,0.08609,0.478013876843018 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.08914","0.14993",0.07312,0.10835,0.08113,0.13105,0.439657415437988 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.04478","0.0718",0.01312,0.17319,0.02895,0.13351,0.326517779705117 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.1785","0.28389",0.06796,0.07799,0.13113,0.22728,0.54807025151778 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.02769","0.04956",0.07541,0.06554,0.05155,0.06281,0.375520381613183 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.09349","0.07765",0.10463,0.08116,0.09906,0.07962,0.478534258456201 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.06838","0.07971",0.05395,0.04039,0.06117,0.0636,0.396379011274935 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.43639","0.31586",0.14589,0.11791,0.33956,0.29983,1 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.12133","0.08353",0.25196,0.12111,0.18664,0.12284,0.668430182133565 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.13529","0.06662",0.12782,0.12149,0.13155,0.09805,0.54898091934085 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.15053","0.10597",0.11878,0.19145,0.13465,0.15554,0.555702515177797 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.25629","0.21899",0.14078,0.0667,0.21008,0.18373,0.719254119687771 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.28004","0.29705",0.07121,0.22865,0.19651,0.29038,0.689830875975716 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.0572","0.04868",-0.08802,0.11699,-0.01541,0.11532,0.230333911535126 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"-0.23334","0.14927",-0.00995,0.08179,-0.12164,0.1642,0 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.09713","0.0234",0.1322,0.09448,0.11466,0.07102,0.512359063313096 diff --git a/nc_invasion_scores_sorted.csv b/nc_invasion_scores_sorted.csv deleted file mode 100644 index e3c0983c6b886612682a21a135126b1c080cec80..0000000000000000000000000000000000000000 --- a/nc_invasion_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -May Strain, Species, Soll Clade, Isolation Site, MTL Genotype, Media, Temperature (°C), MJD Phenotype Score, MJD Score St. Dev., RJF Phenotype Score, RJF Score St. Dev., Total Average Phenotype Score, Total Phenotype Score St. Dev., Normalized Scores -"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.03817","0.02733",0.02217,0.01603,0.03017,0.02379,0.0169558484245125 -"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.04989","0.02389",0.01114,0.00204,0.03439,0.02654,0.0236244113650011 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.04886","0.00972",0.0588,0.01459,0.05383,0.01336,0.0543440472804273 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.01802","0.02114",0.02085,0.02215,0.01944,0.0217,0 -"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.03355","0.02283",0.0491,0.0359,0.04132,0.03107,0.034575392686704 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.14195","0.08182",0.11547,0.08178,0.12871,0.08287,0.172671533769476 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.0331","0.00741",0.03436,0.0114,0.03373,0.00964,0.0225814607629342 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.15982","0.08804",0.07127,0.02823,0.11554,0.07896,0.151859928573686 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.02077","0.00909",0.05373,0.04047,0.03725,0.03364,0.0281438639739578 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.02837","0.01308",0.08544,0.10099,0.0569,0.07746,0.0591953478082235 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.38247","0.29736",0.5065,0.47115,0.44449,0.39881,0.671675990012958 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.10975","0.06659",0.08957,0.07167,0.09966,0.06991,0.126765904996682 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.03914","0.04533",0.02354,0.01732,0.03134,0.03519,0.0188047154009039 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.0863","0.09679",0.11996,0.0915,0.10313,0.09568,0.132249296798458 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.03202","0.01924",0.02276,0.0048,0.02739,0.01476,0.0125628140703518 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.035","0.0186",0.02647,0.01219,0.03073,0.01629,0.0178407762080845 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.08479","0.08607",0.05899,0.03141,0.07189,0.06605,0.0828829683006226 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.03552","0.0203",0.01921,0.00289,0.02737,0.01663,0.0125312095066528 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.07652","0.06388",0.05592,0.02566,0.06622,0.04975,0.0739230744919566 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.0844","0.05966",0.06683,0.05509,0.07561,0.05809,0.0887614171486363 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.61161","0.19176",0.69291,0.15635,0.65226,0.17962,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.18746","0.20959",0.25806,0.31553,0.22276,0.27017,0.321291994564015 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.10327","0.05274",0.21018,0.06962,0.15672,0.08168,0.216933725229923 -"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.02448","0.00746",0.02399,0.00652,0.02423,0.00701,0.0155720693579701 -"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.03473","0.00956",0.01771,0.00462,0.02622,0.01135,0.0182365936935128 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.581","0.09418",0.56779,0.04772,0.57439,0.07495,0.752212626364062 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.01331","0.00556",0.0187,0.00287,0.01601,0.00518,0.00456584320814086 -"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.03704","0.03129",0.01949,0.00864,0.02827,0.02458,0.0209814554462074 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.07275","0.04506",0.07182,0.06726,0.07229,0.05725,0.079922340496753 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.07893","0.02843",0.03387,0.01011,0.0564,0.03103,0.0586463145209881 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.09021","0.04888",0.04174,0.00472,0.06598,0.04234,0.0714735221262636 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.02903","0.01205",0.02618,0.0139,0.0276,0.01308,0.0200843542880096 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01867","0.01278",0.05101,0.04916,0.03484,0.03939,0.0297784026243556 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.43145","0.33746",0.23659,0.21148,0.33402,0.29798,0.43036754368347 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.01832","0.00821",0.02884,0.01897,0.02358,0.01553,0.0147017473388231 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.01344","0.0052",0.01703,0.01834,0.01523,0.0136,0.00352145678516436 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06993","0.07992",0.1406,0.10665,0.10527,0.10065,0.124081140791324 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.05132","0.02707",0.01624,0.00282,0.03378,0.02604,0.0283591082546696 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.0157","0.00509",0.00951,0.00289,0.0126,0.00517,0 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.06724","0.0615",0.14745,0.17078,0.10734,0.13447,0.126852781683069 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01518","0.00666",0.01649,0.00089,0.01583,0.0048,0.00432483095668474 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.38843","0.37503",0.21575,0.23362,0.30209,0.32414,0.387614648189061 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.13366","0.10189",0.221,0.22164,0.17733,0.17793,0.220566378790922 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.38109","0.17592",0.3918,0.20351,0.38644,0.19029,0.500555667135302 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.74106","0.08601",0.77784,0.21525,0.75945,0.16494,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.0854","0.00865",0.09276,0.02846,0.08908,0.02135,0.102403427729798 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.82793","0.12708",0.61876,0.1542,0.72335,0.17579,0.721497940120522 -"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.06744","0.04867",0.03685,0.04141,0.05215,0.0477,0.010654183832329 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.59825","0.16603",0.52675,0.00464,0.5625,0.12276,0.551147495843174 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.00625","0.00296",0.06599,0.03845,0.04209,0.0418,0 -"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.26736","0.11858",0.23906,0.0644,0.25321,0.09646,0.223589591519015 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09094","0.08502",0.09485,0.08103,0.0929,0.08308,0.053811041801256 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.38957","0.22116",0.14755,0.07015,0.26856,0.20386,0.239846223907311 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.39665","0.29413",0.08097,0.06118,0.23881,0.26465,0.208339069929996 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.31517","0.16455",0.19525,0.11266,0.25521,0.15323,0.22570771951749 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.16614","0.06825",0.1057,0.10104,0.13592,0.09137,0.0993719750484522 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.48708","0.30079",0.49774,0.22524,0.49241,0.26577,0.476917700136619 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.67841","0.31215",0.35775,0.30709,0.51808,0.34868,0.504103872997045 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.35418","0.1657",0.4791,0.10519,0.41664,0.15219,0.396672420914396 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.76282","0.24459",0.57969,0.19947,0.67125,0.24123,0.666320705760249 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.17878","0.10697",0.08416,0.06652,0.13147,0.10086,0.0946591402518454 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.07854","0.03972",0.0704,0.04567,0.07447,0.04299,0.0342924922953094 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.97471","0.03686",0.99599,0.00896,0.98632,0.02782,1 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.99913","0.00123",0.52207,0.16914,0.7606,0.26684,0.760948074092118 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.30174","0.0561",0.40948,0.13845,0.36639,0.12468,0.343454454952713 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.0666","0.04775",0.08923,0.0459,0.07792,0.04818,0.0379462630926787 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.73761","0.09084",0.86549,0.13464,0.80155,0.13144,0.804316744860892 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.92653","0.07311",0.88006,0.05069,0.9033,0.06706,0.912076506783305 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.47941","0.04806",0.44671,0.05691,0.46306,0.05515,0.445834171758999 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.40171","0.08558",0.48821,0.07159,0.44496,0.08997,0.49933705966463 -"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.41642","0.02187",0.2746,0.146,0.34551,0.1262,0.370063694267516 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.28098","0.04302",0.21823,0.04747,0.24961,0.0551,0.24540491355778 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.15272","0.11125",0.14363,0.0057,0.14818,0.0789,0.113557779799818 -"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.24988","0.037",0.23664,0.06438,0.24194,0.05546,0.235434810867022 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.26382","0.07863",0.20863,0.14597,0.23622,0.12044,0.227999480046796 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.2094","0.16055",0.20993,0.09116,0.20972,0.12368,0.193552580267776 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.24209","0.213",0.06532,0.04082,0.15371,0.177,0.120746132848044 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.3642","0.08498",0.4672,0.1238,0.4157,0.11801,0.46130248277655 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.19619","0.05391",0.14958,0.08527,0.17289,0.07504,0.145677888989991 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.05232","0.03199",0.06933,0.01465,0.06082,0.02629,0 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.53897","0.08691",0.48224,0.20257,0.5106,0.15842,0.584661380475757 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.33646","0.14253",0.36342,0.09994,0.34994,0.12383,0.37582217600416 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.65615","0.05019",0.62589,0.10369,0.64102,0.08285,0.754192122708956 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.33137","0.06543",0.11373,0.03314,0.22255,0.12055,0.210230079292864 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.43061","0.00815",0.36724,0.03353,0.39259,0.0408,0.431262186403224 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.78181","0.09756",0.8426,0.07051,0.8122,0.09038,0.97670609645132 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.56305","0.0685",0.42333,0.0852,0.49319,0.1042,0.562030417262446 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.20943","0.11239",0.23981,0.06562,0.22462,0.09327,0.212920837124659 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.82561","0.16137",0.83463,0.0373,0.83012,0.1172,1 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.59941","0.28423",0.59199,0.18482,0.5957,0.23976,0.69528142467178 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.65525","0.03979",0.61975,0.0301,0.6375,0.03949,0.749616534511894 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.43027","0.05191",0.36889,0.06242,0.39958,0.06509,0.440348368646822 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.78618","0.01644",0.73301,0.06967,0.7596,0.05717,0.729699341114035 -"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.26531","0.06375",0.245,0.03492,0.25515,0.05239,0.162506465177989 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.49648","0.04984",0.43892,0.08436,0.4677,0.07502,0.401493175020801 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.09882","0.06738",0.12243,0.04562,0.11062,0.05873,0 -"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.67327","0.10005",0.65267,0.04901,0.66297,0.07945,0.621050619532708 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.3699","0.06271",0.24104,0.14096,0.30547,0.1267,0.219085205424003 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.33445","0.07006",0.51052,0.05803,0.42248,0.10903,0.350648766556478 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.45832","0.13866",0.242,0.16268,0.35016,0.18586,0.269333693134543 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.27806","0.07975",0.19083,0.09499,0.23444,0.09795,0.139220580629202 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.46581","0.11926",0.50242,0.14036,0.48412,0.13152,0.419955474600283 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.51701","0.03141",0.42434,0.14905,0.47068,0.11725,0.404843823787357 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.5149","0.37242",0.42545,0.28168,0.47018,0.3332,0.404281634396996 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.68989","0.13151",0.7232,0.1498,0.70655,0.14193,0.670051046796645 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.61974","0.05117",0.42325,0.20437,0.52149,0.17845,0.461973509635926 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.25119","0.01975",0.38456,0.06049,0.31787,0.08044,0.233027502304976 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46279","0.0582",0.26596,0.09603,0.36437,0.12645,0.285311115608626 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"1.0","0.0",0.98663,0.0299,0.99271,0.02307,0.991803278688525 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.87304","0.06833",0.72027,0.06147,0.79665,0.10029,0.771357574939846 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.43189","0.09024",0.42998,0.08187,0.43094,0.08616,0.3601610110414 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.46065","0.26402",0.36627,0.22954,0.41346,0.25184,0.34050686995435 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.49668","0.11005",0.64057,0.31092,0.56862,0.24406,0.514965481571432 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"1.0","0.0",1,0,1,0,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.71322","0.05879",0.52849,0.0471,0.62085,0.10662,0.573691785288628 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.68093","0.01071",0.61408,0.02662,0.64082,0.03929,0.6356663585841 -"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.10936","0.06266",0.11311,0.03415,0.11124,0.05049,0 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.52249","0.05964",0.48237,0.11294,0.50243,0.09252,0.469553840429235 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.49733","0.022",0.11014,0.04516,0.30373,0.19683,0.23104992137893 -"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.67622","0.064",0.72153,0.02386,0.69887,0.05334,0.705345032468702 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.55893","0.06283",0.30529,0.13371,0.42058,0.16582,0.371307510412791 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.42005","0.05842",0.40877,0.08216,0.41441,0.07151,0.363901525608863 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.2383","0.22991",0.3949,0.11151,0.3166,0.19692,0.246498061480477 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.36433","0.14421",0.25377,0.08006,0.30905,0.12907,0.237435632749577 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.49469","0.07462",0.40608,0.15895,0.45039,0.13183,0.407089099878768 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.64694","0.12155",0.5825,0.10295,0.61472,0.11715,0.60433796257397 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.44121","0.26979",0.36421,0.22243,0.40271,0.25023,0.349857761880184 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.62849","0.03307",0.6783,0.12799,0.6534,0.09674,0.650766405396646 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.45649","0.08838",0.32538,0.23858,0.39094,0.19148,0.33572997563347 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.48191","0.0287",0.48663,0.04877,0.48427,0.04008,0.447755998607627 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.40027","0.02888",0.22052,0.05256,0.31039,0.09938,0.239044063809101 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.98119","0.01927",0.9075,0.07531,0.94435,0.06617,1 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.72383","0.0552",0.56955,0.07314,0.64669,0.10074,0.642712246882164 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.22056","0.1053",0.13292,0.07596,0.17674,0.10173,0.0786210704468798 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.88483","0.11788",0.82153,0.1236,0.85318,0.12485,0.890566671868061 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.37129","0.08841",0.3182,0.09442,0.34233,0.09547,0.277382338466709 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.9248","0.01514",0.82914,0.12286,0.87697,0.09975,0.919122324783042 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.56838","0.05006",0.35209,0.05282,0.46024,0.11976,0.418912268487955 diff --git a/norm_adhesion_scores_sorted.csv b/norm_adhesion_scores_sorted.csv deleted file mode 100644 index 1438186fef99082ef4620578b050d4d570420b69..0000000000000000000000000000000000000000 --- a/norm_adhesion_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -"MAY.Strain..","Species","Soll.Clade","Isolation.Site","MTL.Genotype","Media","Temperature..C.","MJD.Phenotype.Score","MJD.Score.St..Dev.","RJF.Phenotype.Score","RJF.Score.St..Dev.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores" -"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.40436","0.05654","0.32061","0.08573",0.36248,0.08383,0.370045797093798 -"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.15948","0.05864","0.24497","0.06442",0.20222,0.07498,0.158534492998456 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.1274","0.01752","0.15739","0.04949",0.14239,0.04004,0.0795708007232509 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.31109","0.08324","0.24456","0.04805",0.27783,0.07567,0.258324644643588 -"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.11858","0.02737","0.19708","0.02142",0.15783,0.04631,0.0999485277620135 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.26181","0.07878","0.15512","0.07884",0.20847,0.09517,0.166783249086038 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.08135","0.02328","0.24382","0.09556",0.16258,0.10694,0.106217582388576 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.3105","0.08328","0.23153","0.09308",0.27102,0.09674,0.249336800010558 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.16264","0.04631","0.1451","0.0605",0.15387,0.05458,0.0947221159049215 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.10856","0.03489","0.21571","0.08742",0.16213,0.08544,0.10562367195027 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.2575","0.07505","0.44473","0.31395",0.35111,0.24671,0.355039660019269 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.18884","0.07321","0.20839","0.05588",0.19862,0.06585,0.153783209492009 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.17602","0.07286","0.20442","0.08652",0.19022,0.08123,0.142696881310298 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.20169","0.07452","0.28724","0.09075",0.24446,0.0934,0.21428288614077 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.23349","0.02271","0.1584","0.01762",0.19594,0.04269,0.150246142881653 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.32406","0.03246","0.37088","0.123",0.34747,0.09295,0.350235584473861 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.07391","0.06126","0.09194","0.07791",0.0821,0.06991,0 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.15916","0.0304","0.26966","0.1231",0.21441,0.10532,0.174622866871676 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.2034","0.0736","0.15831","0.04921",0.18085,0.06654,0.130330346183795 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.25116","0.11163","0.14601","0.04573",0.19858,0.1002,0.153730417453048 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.80052","0.24837","0.87906","0.13587",0.83979,0.204,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.17586","0.12293","0.39536","0.06949",0.28561,0.14838,0.26859269622141 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.09402","0.01649","0.08434","0.03859",0.08918,0.03007,0.00934419089601287 -"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.25164","0.11526","0.1191","0.06192",0.18537,0.1138,0.163377244386105 -"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.22801","0.12081","0.12552","0.10411",0.17677,0.12387,0.153298016970606 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.32246","0.028","0.37487","0.05085",0.34866,0.0487,0.354753644929914 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.10527","0.00646","0.03499","0.00405",0.07013,0.03555,0.0283155970184239 -"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.06624","0.0356","0.09794","0.07738",0.08209,0.06228,0.042332755145094 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.23132","0.05614","0.06809","0.02142",0.1497,0.09202,0.121571890675543 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.12591","0.02525","0.03691","0.02207",0.08141,0.05043,0.0415357929773569 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.64167","0.27566","0.43363","0.20496",0.53765,0.26423,0.576250527401434 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.10193","0.04626","0.05361","0.02397",0.07777,0.04405,0.0372697013735877 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.04006","0.02071","0.09068","0.04648",0.06537,0.04399,0.0227368618442642 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.15329","0.06512","0.15873","0.10503",0.15601,0.08742,0.128967230790868 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.13993","0.05973","0.07499","0.03658",0.10746,0.05922,0.0720664760208148 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.10765","0.05497","0.05846","0.0471",0.08306,0.05679,0.0434695982373072 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06247","0.02983","0.09085","0.04115",0.07666,0.03864,0.0359687778350757 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.16472","0.06514","0.08328","0.03977",0.124,0.0676,0.0914514087478318 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.14465","0.04937","0.05299","0.00119",0.09882,0.05762,0.0619403684778023 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.04013","0.03626","0.05182","0.04795",0.04597,0.04291,0 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.09","0.03182","0.0812","0.02335",0.0856,0.02825,0.0464464863344428 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.25647","0.21209","0.19529","0.2114",0.22588,0.21394,0.210855093525854 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.09922","0.02733","0.2285","0.20024",0.16386,0.15684,0.13816745581548 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.84961","0.19931","0.9488","0.0882",0.89921,0.1619,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.45062","0.23578","0.52365","0.17176",0.48713,0.20948,0.51704092635132 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.11826","0.07866","0.08255","0.02993",0.10041,0.06213,0.0638038535464816 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.03713","0.03013","0.15927","0.0677",0.0982,0.08047,0.0690805864677548 -"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.1376","0.10131","0.07287","0.01717",0.10524,0.07954,0.0797106920138312 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.2137","0.09117","0.11156","0.02141",0.16263,0.08362,0.166367191628792 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.04399","0.02055","0.13808","0.04951",0.09103,0.06041,0.0582541863590379 -"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.06118","0.0323","0.04371","0.0123",0.05245,0.02595,0 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.07587","0.05797","0.11829","0.06029",0.09708,0.06283,0.0673894333126972 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.10218","0.07352","0.0792","0.05128",0.09069,0.06442,0.057740800579824 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.10666","0.05126","0.21475","0.14279",0.1607,0.12012,0.163452972352666 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.23123","0.12379","0.18296","0.07651",0.2071,0.10569,0.233515031633624 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09138","0.07086","0.09668","0.03768",0.09403,0.05681,0.0627840608815136 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.31698","0.29241","0.08156","0.0525",0.19927,0.2408,0.221692059129962 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.20847","0.0641","0.02556","0.00252",0.11701,0.10209,0.0974828997236777 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.15561","0.12283","0.19498","0.13731",0.1753,0.13175,0.185498361695381 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.20962","0.07886","0.18925","0.05945",0.19944,0.07057,0.221948752019569 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.03226","0.01597","0.12031","0.02159",0.07629,0.04794,0.0359974028719404 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.06731","0.05024","0.13541","0.05233",0.10136,0.06157,0.073852054298096 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.76981","0.26568","0.43608","0.28171",0.58777,0.32092,0.808310809790569 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.24403","0.12318","0.07548","0.0362",0.15975,0.12387,0.162018512087215 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.09296","0.05803","0.23065","0.16411",0.16181,0.14103,0.165129025925982 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.09186","0.08274","0.07591","0.02051",0.08316,0.05835,0.0463708155284099 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.51867","0.36484","0.42939","0.20735",0.47403,0.30007,0.636568167061772 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.90286","0.07192","0.52658","0.05493",0.71472,0.19872,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.07615","0.02668","0.10551","0.01848",0.09083,0.02724,0.0579521947242061 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.16356","0.08142","0.17102","0.04669",0.16729,0.06647,0.177445193004016 -"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.14409","0.07049","0.06683","0.05303",0.10546,0.07337,0.109603019596656 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.11518","0.02917","0.02711","0.0122",0.07115,0.04939,0.0719568127455068 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.13688","0.03178","0.0628","0.01808",0.09984,0.04517,0.10343654677522 -"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.00753","0.0075","0.00427","0.0029",0.00557,0.00548,0 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.16561","0.08857","0.08871","0.06018",0.12716,0.08492,0.133413065900064 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.00339","0.00277","0.02131","0.00775",0.01414,0.01078,0.00940332243411091 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.03031","0.01226","0.06998","0.04102",0.05014,0.03619,0.0489038600803178 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.08762","0.05006","0.06852","0.02908",0.07807,0.04203,0.0795496938708332 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.1018","0.10917","0.10321","0.05984",0.1025,0.08804,0.106355197612412 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.06999","0.10789","0.00236","0.0023",0.03617,0.08346,0.0335754569992758 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.33427","0.343","0.31403","0.21948",0.32415,0.28812,0.349557813425794 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.11189","0.08451","0.13228","0.05773",0.12209,0.07309,0.12785007351489 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.16396","0.09244","0.10888","0.07948",0.13642,0.0905,0.143573481972394 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.06425","0.01249","0.05389","0.05717",0.05907,0.0417,0.0587021878908907 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.02649","0.01886","0.07213","0.03876",0.05388,0.03929,0.0530075270468959 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.18256","0.12145","0.13611","0.13072",0.15934,0.12829,0.168722157607145 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.06098","0.02017","0.12882","0.12385",0.0949,0.09499,0.0980161952204349 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.08774","0.11834","0.11535","0.0612",0.10154,0.09521,0.105301849941846 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.50462","0.36976","0.25544","0.19731",0.38003,0.32148,0.410871425749961 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.4998","0.11333","0.22974","0.12861",0.36477,0.18145,0.394127586736597 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"1.0","0.0","0.8339","0.1185",0.91695,0.11797,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.17179","0.02492","0.13819","0.07767",0.15499,0.06008,0.163949175974895 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.39405","0.04549","0.56385","0.08526",0.47895,0.10898,0.0281911738154806 -"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.46491","0.11488","0.48053","0.09357",0.47272,0.10506,0.0121224626653942 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.61432","0.0298","0.66708","0.08144",0.6407,0.06675,0.445384436821336 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.50564","0.08554","0.62897","0.09409",0.56731,0.10903,0.256093471924892 -"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.59612","0.10421","0.55963","0.10643",0.57788,0.10689,0.283356116685151 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.65115","0.19124","0.54811","0.15243",0.59963,0.18044,0.339454747104795 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.70757","0.21187","0.88699","0.11268",0.79728,0.19194,0.849242990895257 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.79183","0.22266","0.68098","0.15271",0.73641,0.1988,0.692244203141523 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.55325","0.13944","0.55712","0.12697",0.55519,0.13336,0.224832993732429 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.52573","0.08604","0.49517","0.10916",0.51045,0.09946,0.109437466147378 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.6314","0.11966","0.58915","0.17981",0.61028,0.15418,0.366923731655103 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.47863","0.04573","0.5838","0.02883",0.53121,0.06501,0.162982641665162 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.47489","0.13595","0.50155","0.0844",0.48822,0.11393,0.052100796987439 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.48031","0.11021","0.56073","0.10101",0.52052,0.1131,0.135410487219829 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.51937","0.13251","0.72099","0.07673",0.62018,0.14794,0.392458280673699 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.24004","0.05309","0.696","0.15599",0.46802,0.25603,0 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.48709","0.06416","0.50157","0.10367",0.49499,0.08823,0.069562301720358 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.51096","0.05616","0.45124","0.12315",0.4811,0.10026,0.0337365556730547 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.56296","0.15388","0.56255","0.10673",0.56276,0.13242,0.244357896365841 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.54269","0.17894","0.61894","0.10128",0.58081,0.15031,0.290913311495706 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.77746","0.16655","0.93399","0.10599",0.85573,0.16004,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.41339","0.02825","0.64693","0.03716",0.50681,0.11883,0.100049005700137 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.65838","0.12181","0.7831","0.1131",0.72074,0.13305,0.651827396765624 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.36551","0.10623","0.5587","0.02997",0.48142,0.11837,0.189534327489029 -"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.43244","0.03875","0.60468","0.09646",0.51856,0.11322,0.266778977142738 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.78417","0.17975","0.65753","0.12574",0.72085,0.16754,0.687506499448847 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.46326","0.07061","0.51721","0.08596",0.49024,0.08315,0.207878371914062 -"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.50838","0.06669","0.63416","0.10398",0.57127,0.10763,0.376406480730434 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.50186","0.17053","0.63349","0.14099",0.57366,0.16839,0.381377259208419 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.51884","0.04168","0.50801","0.02032",0.51342,0.03323,0.256088683679624 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.4938","0.12506","0.52802","0.15591",0.51091,0.14236,0.250868326365924 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.40261","0.11039","0.40341","0.07045",0.40301,0.0926,0.0264553565857614 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.44092","0.08319","0.47094","0.03778",0.45593,0.06632,0.136519623135958 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.47157","0.135","0.52886","0.18005",0.50022,0.16169,0.228635011751003 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.54455","0.22942","0.51176","0.10306",0.52816,0.1786,0.286745283999917 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.44623","0.12472","0.51861","0.18453",0.48242,0.1616,0.191614151119985 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.52239","0.13155","0.45116","0.07877",0.48678,0.11412,0.200682182150954 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.3455","0.07704","0.48618","0.11849",0.41584,0.12221,0.0531394937709282 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.29302","0.04316","0.48757","0.16887",0.39029,0.15701,0 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.45448","0.11775","0.45207","0.06482",0.45328,0.09506,0.131008090513924 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.37452","0.08104","0.543","0.1719",0.45876,0.1586,0.142405524011564 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.47471","0.09132","0.63763","0.15857",0.55617,0.1529,0.345001143902997 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.51085","0.12898","0.46492","0.20497",0.48788,0.17278,0.202969988145005 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.82542","0.1505","0.90916","0.09297",0.8711,0.12942,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.23814","0.19592","0.73597","0.13796",0.48706,0.30111,0.201264532767621 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.72552","0.15428","0.60079","0.06865",0.66316,0.13471,0.56752147417899 diff --git a/norm_biofilm_scores_sorted.csv b/norm_biofilm_scores_sorted.csv deleted file mode 100644 index 893768518a52dbc0bf3099cd72a4ede4207be261..0000000000000000000000000000000000000000 --- a/norm_biofilm_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -"MAY.Strain..","Species","Soll.Clade","Isolation.Site","Media","Temperature..C.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores" -"12C","Candida albicans","I","Oral cavity","LEE",30,0.095333333,0.020572365,0.313043477483122 -"19F","Candida albicans","I","Vagina","LEE",30,0.116333333,0.03058322,0.469565216224683 -"529L","Candida albicans","529L","Oral cavity","LEE",30,0.172138889,0.029546325,0.885507247489423 -"GC75","Candida albicans","SA","Oral cavity","LEE",30,0.142,0.022211108,0.660869566059951 -"L26","Candida albicans","I","Vagina","LEE",30,0.092666667,0.021644219,0.293167706103931 -"P34048","Candida albicans","III","Bloodstream","LEE",30,0.1875,0.013313527,1 -"P37005","Candida albicans","I","Oral cavity","LEE",30,0.094333333,0.013421583,0.305590061352571 -"P37037","Candida albicans","I","Oral cavity","LEE",30,0.102166667,0.004633813,0.363975159344161 -"P37039","Candida albicans","I","Bloodstream","LEE",30,0.08,0.014302292,0.198757765965819 -"P57055","Candida albicans","III","Bloodstream","LEE",30,0.122666667,0.01060922,0.516770190020447 -"P57072","Candida albicans","II","Bloodstream","LEE",30,0.142833333,0.03977611,0.667080743684271 -"P60002","Candida albicans","SA","Bloodstream","LEE",30,0.130333333,0.023534844,0.57391304205239 -"P75010","Candida albicans","E","Bloodstream","LEE",30,0.100833333,0.028121265,0.35403726620115 -"P75016","Candida albicans","SA","Bloodstream","LEE",30,0.134166667,0.013973189,0.602484475521778 -"P75063","Candida albicans","SA","Bloodstream","LEE",30,0.097833333,0.028726681,0.331677017809498 -"P76055","Candida albicans","II","Bloodstream","LEE",30,0.099166667,0.022549329,0.34161491095251 -"P76067","Candida albicans","II","Bloodstream","LEE",30,0.0745,0.026060293,0.157763977247791 -"P78042","Candida albicans","III","Bloodstream","LEE",30,0.1085,0.025751483,0.411180125686509 -"P78048","Candida albicans","I","Bloodstream","LEE",30,0.130666667,0.009546669,0.576397519064851 -"P87","Candida albicans","SA","Oral cavity","LEE",30,0.1075,0.013503086,0.403726709555958 -"P94015","Candida albicans","I","Bloodstream","LEE",30,0.053333333,0.006497863,0 -"SC5314","Candida albicans","I","Bloodstream","LEE",30,0.136166667,0.015614274,0.617391307782879 -"WO-1","Candida albicans","WO-1","Bloodstream","LEE",30,0.085166667,0.022086321,0.237267085124802 -"12C","Candida albicans","I","Oral cavity","LEE",37,0.070166667,0.007717225,0.3673647486911 -"19F","Candida albicans","I","Vagina","LEE",37,0.0315,0.035251478,0.164921465968586 -"529L","Candida albicans","529L","Oral cavity","LEE",37,0.029566667,0.004127953,0.154799303664921 -"GC75","Candida albicans","SA","Oral cavity","LEE",37,0.036,0.019735051,0.18848167539267 -"L26","Candida albicans","I","Vagina","LEE",37,0.0385,0.010011105,0.201570680628272 -"P34048","Candida albicans","III","Bloodstream","LEE",37,0.067833333,0.009994443,0.355148340314136 -"P37005","Candida albicans","I","Oral cavity","LEE",37,0.043,0.009788031,0.225130890052356 -"P37037","Candida albicans","I","Oral cavity","LEE",37,0.116166667,0.089786166,0.608202445026178 -"P37039","Candida albicans","I","Bloodstream","LEE",37,0.032666667,0.007371115,0.171029670157068 -"P57055","Candida albicans","III","Bloodstream","LEE",37,0.0255,0.008205689,0.133507853403141 -"P57072","Candida albicans","II","Bloodstream","LEE",37,0.093166667,0.01338739,0.487783596858639 -"P60002","Candida albicans","SA","Bloodstream","LEE",37,0.093,0.056799844,0.486910994764398 -"P75010","Candida albicans","E","Bloodstream","LEE",37,0.0405,0.009616248,0.212041884816754 -"P75016","Candida albicans","SA","Bloodstream","LEE",37,0.054166667,0.025584826,0.283595115183246 -"P75063","Candida albicans","SA","Bloodstream","LEE",37,0.031333333,0.010563301,0.164048863874346 -"P76055","Candida albicans","II","Bloodstream","LEE",37,0.087833333,0.047346242,0.459860382198953 -"P76067","Candida albicans","II","Bloodstream","LEE",37,0,0.015227898,0 -"P78042","Candida albicans","III","Bloodstream","LEE",37,0.066833333,0.017062793,0.349912738219895 -"P78048","Candida albicans","I","Bloodstream","LEE",37,0.038666667,0.007289643,0.202443282722513 -"P87","Candida albicans","SA","Oral cavity","LEE",37,0.033666667,0.007559027,0.176265272251309 -"P94015","Candida albicans","I","Bloodstream","LEE",37,0.069666667,0.007243771,0.364746947643979 -"SC5314","Candida albicans","I","Bloodstream","LEE",37,0.191,0.035179303,1 -"WO-1","Candida albicans","WO-1","Bloodstream","LEE",37,0.027,0.012212243,0.141361256544503 -"12C","Candida albicans","I","Oral cavity","SPI",30,0.201,0.017663522,0.666471278624234 -"19F","Candida albicans","I","Vagina","SPI",30,0.288833333,0.108809849,0.975381008177469 -"529L","Candida albicans","529L","Oral cavity","SPI",30,0.228333333,0.020055479,0.762602578854165 -"GC75","Candida albicans","SA","Oral cavity","SPI",30,0.191666667,0.02208066,0.633645957366525 -"L26","Candida albicans","I","Vagina","SPI",30,0.240166667,0.011728408,0.804220400708348 -"P34048","Candida albicans","III","Bloodstream","SPI",30,0.2645,0.018282505,0.889800704442908 -"P37005","Candida albicans","I","Oral cavity","SPI",30,0.271833333,0.012432037,0.915592028037036 -"P37037","Candida albicans","I","Oral cavity","SPI",30,0.193,0.018015425,0.638335287969912 -"P37039","Candida albicans","I","Bloodstream","SPI",30,0.233166667,0.018697148,0.779601408885816 -"P57055","Candida albicans","III","Bloodstream","SPI",30,0.243166667,0.011710631,0.814771397203718 -"P57072","Candida albicans","II","Bloodstream","SPI",30,0.224166667,0.099432417,0.747948419399705 -"P60002","Candida albicans","SA","Bloodstream","SPI",30,0.200666667,0.012569805,0.665298946852637 -"P75010","Candida albicans","E","Bloodstream","SPI",30,0.251,0.129727492,0.842321220213741 -"P75016","Candida albicans","SA","Bloodstream","SPI",30,0.187333333,0.014161764,0.618405626750769 -"P75063","Candida albicans","SA","Bloodstream","SPI",30,0.2305,0.118026833,0.770222744162043 -"P76055","Candida albicans","II","Bloodstream","SPI",30,0.185166667,0.023723523,0.610785464959889 -"P76067","Candida albicans","II","Bloodstream","SPI",30,0.229,0.090368997,0.764947245914358 -"P78042","Candida albicans","III","Bloodstream","SPI",30,0.263666667,0.015362291,0.886869873255416 -"P78048","Candida albicans","I","Bloodstream","SPI",30,0.227,0.010657548,0.757913248250778 -"P87","Candida albicans","SA","Oral cavity","SPI",30,0.198333333,0.018568941,0.65709261390046 -"P94015","Candida albicans","I","Bloodstream","SPI",30,0.0115,0.003947573,0 -"SC5314","Candida albicans","I","Bloodstream","SPI",30,0.295833333,0.01332604,1 -"WO-1","Candida albicans","WO-1","Bloodstream","SPI",30,0.182333333,0.038016078,0.600820632591818 -"12C","Candida albicans","I","Oral cavity","SPI",37,0.091333333,0.009358597,0.166666665829146 -"19F","Candida albicans","I","Vagina","SPI",37,0.158166667,0.156771242,0.33458961557789 -"529L","Candida albicans","529L","Oral cavity","SPI",37,0.047,0.017198999,0.0552763819095477 -"GC75","Candida albicans","SA","Oral cavity","SPI",37,0.1405,0.044180187,0.290201005025126 -"L26","Candida albicans","I","Vagina","SPI",37,0.189666667,0.084082136,0.413735344221106 -"P34048","Candida albicans","III","Bloodstream","SPI",37,0.099666667,0.012829004,0.187604690954774 -"P37005","Candida albicans","I","Oral cavity","SPI",37,0.140166667,0.016079663,0.289363484924623 -"P37037","Candida albicans","I","Oral cavity","SPI",37,0.025,0.028732966,0 -"P37039","Candida albicans","I","Bloodstream","SPI",37,0.081333333,0.017240134,0.141541037688442 -"P57055","Candida albicans","III","Bloodstream","SPI",37,0.2765,0.062311048,0.631909547738694 -"P57072","Candida albicans","II","Bloodstream","SPI",37,0.149166667,0.081202764,0.311976550251256 -"P60002","Candida albicans","SA","Bloodstream","SPI",37,0.262,0.128355842,0.595477386934673 -"P75010","Candida albicans","E","Bloodstream","SPI",37,0.309833333,0.112417995,0.715661640703518 -"P75016","Candida albicans","SA","Bloodstream","SPI",37,0.1315,0.052787046,0.267587939698493 -"P75063","Candida albicans","SA","Bloodstream","SPI",37,0.127333333,0.049466319,0.257118927135678 -"P76055","Candida albicans","II","Bloodstream","SPI",37,0.1255,0.041322579,0.25251256281407 -"P76067","Candida albicans","II","Bloodstream","SPI",37,0.252666667,0.080844329,0.572026801507538 -"P78042","Candida albicans","III","Bloodstream","SPI",37,0.265666667,0.060271607,0.604690118090452 -"P78048","Candida albicans","I","Bloodstream","SPI",37,0.0675,0.009706813,0.10678391959799 -"P87","Candida albicans","SA","Oral cavity","SPI",37,0.423,0.023212185,1 -"P94015","Candida albicans","I","Bloodstream","SPI",37,0.033833333,0.008698659,0.0221943040201005 -"SC5314","Candida albicans","I","Bloodstream","SPI",37,0.2955,0.018147543,0.67964824120603 -"WO-1","Candida albicans","WO-1","Bloodstream","SPI",37,0.080833333,0.038594761,0.140284756281407 -"12C","Candida albicans","I","Oral cavity","YPD",30,0.687833333,0.051020965,0.64463579208251 -"19F","Candida albicans","I","Vagina","YPD",30,0.552333333,0.026159766,0.455434023230565 -"529L","Candida albicans","529L","Oral cavity","YPD",30,0.525833333,0.121769477,0.41843146327059 -"GC75","Candida albicans","SA","Oral cavity","YPD",30,0.382666667,0.021959559,0.218524552216453 -"L26","Candida albicans","I","Vagina","YPD",30,0.578,0.052860666,0.491272981141515 -"P34048","Candida albicans","III","Bloodstream","YPD",30,0.4895,0.046867722,0.367698394105374 -"P37005","Candida albicans","I","Oral cavity","YPD",30,0.825666667,0.018649546,0.837095648905837 -"P37037","Candida albicans","I","Oral cavity","YPD",30,0.525666667,0.050334437,0.418198743698579 -"P37039","Candida albicans","I","Bloodstream","YPD",30,0.761166667,0.03512715,0.747032814286277 -"P57055","Candida albicans","III","Bloodstream","YPD",30,0.384833333,0.014314911,0.221549917823179 -"P57072","Candida albicans","II","Bloodstream","YPD",30,0.522666667,0.051629019,0.414009774646507 -"P60002","Candida albicans","SA","Bloodstream","YPD",30,0.312,0.133677057,0.119851058524413 -"P75010","Candida albicans","E","Bloodstream","YPD",30,0.549,0.043755635,0.450779613638147 -"P75016","Candida albicans","SA","Bloodstream","YPD",30,0.3835,0.076235199,0.219688154265477 -"P75063","Candida albicans","SA","Bloodstream","YPD",30,0.481333333,0.018397615,0.35629508899818 -"P76055","Candida albicans","II","Bloodstream","YPD",30,0.585333333,0.059951833,0.501512682803363 -"P76067","Candida albicans","II","Bloodstream","YPD",30,0.547666667,0.272198253,0.448917850080445 -"P78042","Candida albicans","III","Bloodstream","YPD",30,0.616333333,0.050002222,0.544798696341446 -"P78048","Candida albicans","I","Bloodstream","YPD",30,0.7795,0.022375582,0.772632069139057 -"P87","Candida albicans","SA","Oral cavity","YPD",30,0.555833333,0.046129046,0.460321153791316 -"P94015","Candida albicans","I","Bloodstream","YPD",30,0.226166667,0.022637849,0 -"SC5314","Candida albicans","I","Bloodstream","YPD",30,0.942333333,0.112602546,1 -"WO-1","Candida albicans","WO-1","Bloodstream","YPD",30,0.3555,0.085379057,0.180591109779466 -"12C","Candida albicans","I","Oral cavity","YPD",37,0.311,0.041115353,0.235687168109339 -"19F","Candida albicans","I","Vagina","YPD",37,0.527,0.176534935,0.432498102050114 -"529L","Candida albicans","529L","Oral cavity","YPD",37,0.222833333,0.025597309,0.155353075170843 -"GC75","Candida albicans","SA","Oral cavity","YPD",37,0.739,0.154473748,0.625664389066059 -"L26","Candida albicans","I","Vagina","YPD",37,0.200166667,0.004818944,0.134700076537585 -"P34048","Candida albicans","III","Bloodstream","YPD",37,0.186833333,0.046366894,0.12255125284738 -"P37005","Candida albicans","I","Oral cavity","YPD",37,0.476833333,0.064052062,0.386788154897494 -"P37037","Candida albicans","I","Oral cavity","YPD",37,0.092833333,0.039630235,0.0369020501138952 -"P37039","Candida albicans","I","Bloodstream","YPD",37,0.556833333,0.214545579,0.459681093394078 -"P57055","Candida albicans","III","Bloodstream","YPD",37,0.442,0.199082688,0.355049354897494 -"P57072","Candida albicans","II","Bloodstream","YPD",37,0.999,0.15214622,0.862566439179955 -"P60002","Candida albicans","SA","Bloodstream","YPD",37,0.834,0.229289967,0.712224753530752 -"P75010","Candida albicans","E","Bloodstream","YPD",37,0.148666667,0.063838337,0.08777524738041 -"P75016","Candida albicans","SA","Bloodstream","YPD",37,0.055333333,0.025249862,0.00273348519362186 -"P75063","Candida albicans","SA","Bloodstream","YPD",37,0.230666667,0.085450603,0.162490509339408 -"P76055","Candida albicans","II","Bloodstream","YPD",37,1.149833333,0.061313403,1 -"P76067","Candida albicans","II","Bloodstream","YPD",37,0.515833333,0.261253176,0.422323462414579 -"P78042","Candida albicans","III","Bloodstream","YPD",37,0.330333333,0.219723817,0.253302961275626 -"P78048","Candida albicans","I","Bloodstream","YPD",37,0.285666667,0.064599837,0.212604404555809 -"P87","Candida albicans","SA","Oral cavity","YPD",37,0.125333333,0.067227846,0.0665148063781321 -"P94015","Candida albicans","I","Bloodstream","YPD",37,0.052333333,0.007932003,0 -"SC5314","Candida albicans","I","Bloodstream","YPD",37,1.090166667,0.034047353,0.945634017312073 -"WO-1","Candida albicans","WO-1","Bloodstream","YPD",37,0.178166667,0.123078566,0.114654518451025 diff --git a/norm_filamentation_scores_sorted.csv b/norm_filamentation_scores_sorted.csv deleted file mode 100644 index b6da0a47f9e36445019c033ed095b796adaafc92..0000000000000000000000000000000000000000 --- a/norm_filamentation_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -"MAY.Strain..","Species","Soll.Clade","Isolation.Site","MTL.Genotype","Media","Temperature..C.","MJD.Phenotype.Score","MJD.Score.St..Dev.","RJF.Phenotype.Score","RJF.Score.St..Dev.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores" -"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.04099","0.04034",-0.08852,0.00525,-0.06476,0.03731,0.836297385839406 -"19F","Candida albicans","I","Vagina","α/α","LEE",30,"-0.03515","0.0075",-0.06619,0.06579,-0.05067,0.04932,0.883399077355085 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"-0.02499","0.05624",-0.06038,0.05067,-0.04269,0.05638,0.910075549909741 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"-0.1212","0.04089",-0.50867,0.11858,-0.31493,0.21307,0 -"L26","Candida albicans","I","Vagina","a/a","LEE",30,"-0.04675","0.03686",-0.41031,0.36015,-0.22853,0.31397,0.288827973524102 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.13806","0.25482",-0.19441,0.21593,-0.16624,0.23785,0.497058233602995 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"-0.27506","0.35284",-0.05103,0.08298,-0.16304,0.27971,0.50775556595574 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"-0.01747","0.02972",-0.0878,0.02925,-0.05264,0.04589,0.876813532125426 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.0126","0.05173",-0.19819,0.31891,-0.1054,0.24658,0.700441264959551 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.04046","0.05759",-0.31142,0.36746,-0.17594,0.29585,0.464631944908738 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"-0.23778","0.20026",-0.02885,0.06863,-0.13332,0.18254,0.607107040181855 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"-0.09777","0.05773",-0.08857,0.0586,-0.09317,0.05835,0.741325132045196 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"-0.1085","0.05142",-0.1093,0.04122,-0.1089,0.0466,0.688741057698736 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"-0.1514","0.10162",-0.12686,0.0782,-0.13913,0.0915,0.587684696128903 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"-0.00565","0.04619",-0.03542,0.08033,-0.02053,0.06719,0.984154576452497 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.01368","0.06578",-0.01791,0.05565,-0.01579,0.06096,1 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"-0.08998","0.07848",-0.06208,0.08878,-0.0773,0.08447,0.794377214682089 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"-0.02409","0.06358",-0.06982,0.01683,-0.04696,0.05182,0.895801297051548 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"-0.04377","0.05186",-0.19432,0.22102,-0.11905,0.1773,0.654810456642375 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"-0.18624","0.26727",-0.10737,0.1309,-0.14681,0.2141,0.562011098482316 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"-0.19419","0.28298",-0.19917,0.27956,-0.19668,0.28129,0.395299859597513 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"-0.01106","0.08714",-0.09,0.01917,-0.05053,0.07442,0.883867085645517 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"-0.03575","0.06478",-0.26474,0.38331,-0.15025,0.29778,0.550511466203116 -"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.27621","0.27175",-0.51195,0.25542,-0.39408,0.28885,0.234671065483038 -"19F","Candida albicans","I","Vagina","α/α","LEE",37,"-0.08923","0.03871",-0.27054,0.18985,-0.17988,0.16428,0.699585440496603 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"-0.172","0.03372",-0.05364,0.05817,-0.11282,0.07591,0.845137065092353 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"-0.10733","0.12608",-0.32594,0.13508,-0.21664,0.17035,0.619799014607254 -"L26","Candida albicans","I","Vagina","a/a","LEE",37,"-0.18102","0.15419",-0.82338,0.02109,-0.5022,0.33951,0 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.07721","0.06021",-0.56364,0.23517,-0.32043,0.29769,0.394526078180279 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"-0.05025","0.07355",-0.03269,0.04913,-0.04147,0.06316,1 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"-0.1874","0.20732",-0.02009,0.05022,-0.10374,0.17248,0.864844920018232 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.06909","0.06682",-0.17973,0.24474,-0.12441,0.18773,0.819981333970004 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.09342","0.13074",-0.08379,0.04193,-0.08861,0.09721,0.897684109999349 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"-0.25818","0.29755",-0.377,0.26048,-0.31759,0.28587,0.400690209016127 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"-0.10764","0.08043",-0.09909,0.04194,-0.10337,0.06428,0.865647993401775 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"-0.09211","0.0736",-0.15669,0.08917,-0.1244,0.0879,0.820003038656046 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"-0.06784","0.073",-0.07824,0.03059,-0.07304,0.05621,0.931478306166301 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"-0.51613","0.27766",-0.01219,0.00601,-0.26416,0.31946,0.516658346537017 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.128","0.02438",-0.25605,0.13317,-0.19203,0.11517,0.673214246955918 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"-0.06589","0.06482",-0.14899,0.09736,-0.10744,0.09255,0.856814186182797 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"-0.08498","0.02669",-0.1091,0.02424,-0.09704,0.0282,0.879387059666182 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"-0.2315","0.11715",-0.17935,0.13163,-0.20542,0.1273,0.64415167234606 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"-0.24112","0.19811",-0.1087,0.06223,-0.17491,0.16107,0.710372669459336 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"-0.27706","0.28252",-0.0714,0.05421,-0.17423,0.22793,0.711848588110173 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"-0.11099","0.06829",-0.08615,0.00656,-0.09857,0.05007,0.876066242701799 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"-0.38543","0.26521",-0.34904,0.30265,-0.36724,0.28513,0.292926442819005 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.2469","0.01296",0.39794,0.17955,0.32242,0.14801,0.0865159461569008 -"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.32672","0.0526",0.2889,0.00079,0.30781,0.04173,0.0765127966368603 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.76397","0.3195",0.35123,0.14109,0.5576,0.32184,0.247538581620497 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.28803","0.12367",0.28736,0.02878,0.2877,0.08979,0.0627439166335739 -"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.1824","0.03441",0.28318,0.05332,0.23279,0.06747,0.0251482328453859 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34379","0.15011",0.24816,0.06084,0.29598,0.12411,0.0684130527065332 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.22349","0.06303",0.19419,0.03096,0.20884,0.05177,0.00875018828652415 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.42458","0.16919",0.20811,0.03882,0.31635,0.16365,0.0823599490599367 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.17708","0.03416",0.25065,0.05002,0.21387,0.05646,0.01219411998302 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.34398","0.28243",0.23475,0.03919,0.28936,0.20889,0.0638804825612445 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.27147","0.09582",0.18553,0.05762,0.2285,0.08998,0.0222109630684541 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.28738","0.09165",0.41674,0.36199,0.35206,0.27185,0.106809810070248 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.30983","0.13422",0.37159,0.34613,0.34071,0.26432,0.0990387117093678 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.27907","0.12028",0.28337,0.1203,0.28122,0.12031,0.0583072014460405 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.23418","0.04655",0.24566,0.07532,0.23992,0.06287,0.030029988908212 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.27443","0.13986",0.16728,0.03279,0.22086,0.11484,0.0169800210880907 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"1.96451","1.08699",1.40001,0.48797,1.6566,0.86369,1 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.48766","0.13675",0.38665,0.0365,0.43716,0.1121,0.165075930820108 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.22606","0.10838",0.29909,0.08999,0.26257,0.10609,0.0455379517164884 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.1748","0.01382",0.20668,0.05681,0.19606,0.04941,0 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.94036","0.56363",1.02914,0.41858,0.98475,0.49841,0.539998904514769 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.5454","0.12933",0.47513,0.15885,0.51027,0.14905,0.215132759116491 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"1.36474","0.92771",0.43757,0.2214,0.90116,0.81838,0.482766647952127 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.36402","0.11843",0.46793,0.3715,0.42637,0.30168,0.235425285744338 -"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.36736","0.15235",0.3179,0.00507,0.34263,0.11059,0.117986115980646 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.441","0.16246",0.62106,0.24005,0.53103,0.22386,0.382203211555992 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.22402","0.02924",0.35762,0.06411,0.29082,0.08333,0.0453264146974266 -"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.14651","0.01592",0.47404,0.16117,0.34302,0.20355,0.118533062197602 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.40667","0.19144",0.33579,0.15025,0.37123,0.17569,0.158095505224038 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.37134","0.084",0.21147,0.05498,0.27542,0.10378,0.0237290512586775 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.57556","0.08937",0.47688,0.29484,0.52622,0.22336,0.375457541546876 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.22933","0.06008",0.28768,0.06033,0.2585,0.06691,0 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.37073","0.21586",0.30106,0.08404,0.3359,0.16746,0.108547787672674 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.28902","0.08601",0.47858,0.20827,0.37518,0.18072,0.163635088703457 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.38247","0.11911",0.33901,0.11068,0.36074,0.11701,0.143384054414136 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.2752","0.04497",0.33501,0.10986,0.3051,0.08911,0.0653530607951756 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.37552","0.15942",0.36015,0.1474,0.36784,0.15372,0.153341280415118 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.25639","0.0595",0.32908,0.09455,0.29274,0.08695,0.0480190729962836 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.47839","0.23091",0.24837,0.08096,0.36338,0.20776,0.147086459575065 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.48725","0.12839",0.37463,0.0877,0.43094,0.12353,0.241834373466096 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.36157","0.11721",0.31645,0.0139,0.33901,0.08645,0.112909333146343 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.28549","0.07521",0.24891,0.06627,0.2672,0.0732,0.0122011079166959 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.78745","0.32976",0.78296,0.27819,0.78521,0.30508,0.738671902391137 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.41015","0.29012",0.44398,0.20491,0.42707,0.25173,0.236406984082463 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.67101","0.2304",0.50393,0.16271,0.58747,0.21624,0.46135614613281 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"1.22802","0.23879",0.71508,0.44828,0.97155,0.44132,1 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.24524","0.14067",0.21748,0.09501,0.23136,0.12083,0.574409139104559 -"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.25653","0.15647",0.21744,0.10667,0.23699,0.13532,0.593665560762048 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.10265","0.05696",0.13797,0.02159,0.12031,0.04655,0.194582207476827 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.143","0.06843",0.02702,0.03582,0.08501,0.07966,0.0738447857167288 -"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.22953","0.02028",0.1358,0.08309,0.18267,0.07651,0.407873584841126 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.0484","0.052",0.07903,0.0754,0.06372,0.06655,0.00102609706878269 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.08293","0.07678",0.05511,0.03795,0.06902,0.06214,0.0191538119506105 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.18345","0.18786",0.17751,0.13348,0.18048,0.16298,0.400383076239012 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.15024","0.12527",0.093,0.10566,0.12162,0.11937,0.199062831343845 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.11791","0.01678",0.07271,0.04972,0.09531,0.04345,0.109074118411602 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.1332","0.08506",0.06669,0.09986,0.09995,0.09854,0.124944419742108 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.08737","0.11095",0.03946,0.09158,0.06342,0.10451,0 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.12261","0.07198",0.18336,0.03999,0.15298,0.06567,0.306324178267264 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.10861","0.11907",0.12807,0.13663,0.11834,0.12852,0.187844170058487 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.0826","0.09144",0.04716,0.02888,0.06488,0.07008,0.00499367240140914 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.18004","0.16851",0.25785,0.09205,0.21895,0.14124,0.531962923692581 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46645","0.09227",0.26357,0.13443,0.35579,0.1547,1 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.16136","0.18463",0.20492,0.08911,0.18314,0.14659,0.409481136915552 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.06269","0.04443",0.06479,0.08043,0.06374,0.06498,0.00109450354003489 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.0996","0.09517",0.1064,0.11316,0.103,0.10461,0.135376406608065 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.14206","0.11834",0.074,0.20584,0.10803,0.1713,0.152580634127988 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.28722","0.09674",0.18579,0.15501,0.23651,0.1388,0.592023805451996 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.15643","0.00544",0.11431,0.09245,0.13537,0.06879,0.246092280329719 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.14053","0.01972",0.15817,0.03985,0.15111,0.0344,0.591392020815265 -"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.07693","0.05958",0.01134,0.07934,0.04413,0.07745,0.359431916738942 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.07727","0.04461",0.19281,0.05065,0.13504,0.07494,0.55654813529922 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.12178","0.04529",0.05406,0.0492,0.08792,0.05816,0.454379878577624 -"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.4013","0.31601",0.09973,0.04673,0.30077,0.29583,0.915893321769297 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.24187","0.38409",0.13585,0.14936,0.19643,0.31083,0.689657415437988 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.40995","0.30997",0.1583,0.13341,0.32607,0.28993,0.970750216825672 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.02876","0.06888",0.15137,0.05448,0.09882,0.08609,0.478013876843018 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.08914","0.14993",0.07312,0.10835,0.08113,0.13105,0.439657415437988 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.04478","0.0718",0.01312,0.17319,0.02895,0.13351,0.326517779705117 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.1785","0.28389",0.06796,0.07799,0.13113,0.22728,0.54807025151778 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.02769","0.04956",0.07541,0.06554,0.05155,0.06281,0.375520381613183 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.09349","0.07765",0.10463,0.08116,0.09906,0.07962,0.478534258456201 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.06838","0.07971",0.05395,0.04039,0.06117,0.0636,0.396379011274935 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.43639","0.31586",0.14589,0.11791,0.33956,0.29983,1 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.12133","0.08353",0.25196,0.12111,0.18664,0.12284,0.668430182133565 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.13529","0.06662",0.12782,0.12149,0.13155,0.09805,0.54898091934085 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.15053","0.10597",0.11878,0.19145,0.13465,0.15554,0.555702515177797 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.25629","0.21899",0.14078,0.0667,0.21008,0.18373,0.719254119687771 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.28004","0.29705",0.07121,0.22865,0.19651,0.29038,0.689830875975716 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.0572","0.04868",-0.08802,0.11699,-0.01541,0.11532,0.230333911535126 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"-0.23334","0.14927",-0.00995,0.08179,-0.12164,0.1642,0 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.09713","0.0234",0.1322,0.09448,0.11466,0.07102,0.512359063313096 diff --git a/norm_invasion_scores_sorted.csv b/norm_invasion_scores_sorted.csv deleted file mode 100644 index 81760796bb221da0a471c34faf52df627825867a..0000000000000000000000000000000000000000 --- a/norm_invasion_scores_sorted.csv +++ /dev/null @@ -1,139 +0,0 @@ -"MAY.Strain..","Species","Soll.Clade","Isolation.Site","MTL.Genotype","Media","Temperature..C.","MJD.Phenotype.Score","MJD.Score.St..Dev.","RJF.Phenotype.Score","RJF.Score.St..Dev.","Total.Average.Phenotype.Score","Total.Phenotype.Score.St..Dev.","Normalized.Scores" -"12C","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.03817","0.02733",0.02217,0.01603,0.03017,0.02379,0.0169558484245125 -"19F","Candida albicans","I","Vagina","α/α","LEE",30,"0.04989","0.02389",0.01114,0.00204,0.03439,0.02654,0.0236244113650011 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",30,"0.04886","0.00972",0.0588,0.01459,0.05383,0.01336,0.0543440472804273 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",30,"0.01802","0.02114",0.02085,0.02215,0.01944,0.0217,0 -"L26","Candida albicans","I","Vagina","a/a","LEE",30,"0.03355","0.02283",0.0491,0.0359,0.04132,0.03107,0.034575392686704 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.14195","0.08182",0.11547,0.08178,0.12871,0.08287,0.172671533769476 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",30,"0.0331","0.00741",0.03436,0.0114,0.03373,0.00964,0.0225814607629342 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",30,"0.15982","0.08804",0.07127,0.02823,0.11554,0.07896,0.151859928573686 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.02077","0.00909",0.05373,0.04047,0.03725,0.03364,0.0281438639739578 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.02837","0.01308",0.08544,0.10099,0.0569,0.07746,0.0591953478082235 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",30,"0.38247","0.29736",0.5065,0.47115,0.44449,0.39881,0.671675990012958 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",30,"0.10975","0.06659",0.08957,0.07167,0.09966,0.06991,0.126765904996682 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",30,"0.03914","0.04533",0.02354,0.01732,0.03134,0.03519,0.0188047154009039 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",30,"0.0863","0.09679",0.11996,0.0915,0.10313,0.09568,0.132249296798458 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",30,"0.03202","0.01924",0.02276,0.0048,0.02739,0.01476,0.0125628140703518 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.035","0.0186",0.02647,0.01219,0.03073,0.01629,0.0178407762080845 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",30,"0.08479","0.08607",0.05899,0.03141,0.07189,0.06605,0.0828829683006226 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",30,"0.03552","0.0203",0.01921,0.00289,0.02737,0.01663,0.0125312095066528 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",30,"0.07652","0.06388",0.05592,0.02566,0.06622,0.04975,0.0739230744919566 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",30,"0.0844","0.05966",0.06683,0.05509,0.07561,0.05809,0.0887614171486363 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",30,"0.61161","0.19176",0.69291,0.15635,0.65226,0.17962,1 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",30,"0.18746","0.20959",0.25806,0.31553,0.22276,0.27017,0.321291994564015 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",30,"0.10327","0.05274",0.21018,0.06962,0.15672,0.08168,0.216933725229923 -"12C","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.02448","0.00746",0.02399,0.00652,0.02423,0.00701,0.0155720693579701 -"19F","Candida albicans","I","Vagina","α/α","LEE",37,"0.03473","0.00956",0.01771,0.00462,0.02622,0.01135,0.0182365936935128 -"529L","Candida albicans","529L","Oral cavity","a/α","LEE",37,"0.581","0.09418",0.56779,0.04772,0.57439,0.07495,0.752212626364062 -"GC75","Candida albicans","SA","Oral cavity","a/α","LEE",37,"0.01331","0.00556",0.0187,0.00287,0.01601,0.00518,0.00456584320814086 -"L26","Candida albicans","I","Vagina","a/a","LEE",37,"0.03704","0.03129",0.01949,0.00864,0.02827,0.02458,0.0209814554462074 -"P34048","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.07275","0.04506",0.07182,0.06726,0.07229,0.05725,0.079922340496753 -"P37005","Candida albicans","I","Oral cavity","a/a","LEE",37,"0.07893","0.02843",0.03387,0.01011,0.0564,0.03103,0.0586463145209881 -"P37037","Candida albicans","I","Oral cavity","a/α","LEE",37,"0.09021","0.04888",0.04174,0.00472,0.06598,0.04234,0.0714735221262636 -"P37039","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.02903","0.01205",0.02618,0.0139,0.0276,0.01308,0.0200843542880096 -"P57055","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01867","0.01278",0.05101,0.04916,0.03484,0.03939,0.0297784026243556 -"P57072","Candida albicans","II","Bloodstream","α/α","LEE",37,"0.43145","0.33746",0.23659,0.21148,0.33402,0.29798,0.43036754368347 -"P60002","Candida albicans","SA","Bloodstream","a/a","LEE",37,"0.01832","0.00821",0.02884,0.01897,0.02358,0.01553,0.0147017473388231 -"P75010","Candida albicans","E","Bloodstream","a/α","LEE",37,"0.01344","0.0052",0.01703,0.01834,0.01523,0.0136,0.00352145678516436 -"P75016","Candida albicans","SA","Bloodstream","a/α","LEE",37,"0.06993","0.07992",0.1406,0.10665,0.10527,0.10065,0.124081140791324 -"P75063","Candida albicans","SA","Bloodstream","α/-","LEE",37,"0.05132","0.02707",0.01624,0.00282,0.03378,0.02604,0.0283591082546696 -"P76055","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.0157","0.00509",0.00951,0.00289,0.0126,0.00517,0 -"P76067","Candida albicans","II","Bloodstream","a/α","LEE",37,"0.06724","0.0615",0.14745,0.17078,0.10734,0.13447,0.126852781683069 -"P78042","Candida albicans","III","Bloodstream","a/α","LEE",37,"0.01518","0.00666",0.01649,0.00089,0.01583,0.0048,0.00432483095668474 -"P78048","Candida albicans","I","Bloodstream","α/α","LEE",37,"0.38843","0.37503",0.21575,0.23362,0.30209,0.32414,0.387614648189061 -"P87","Candida albicans","SA","Oral cavity","a/a","LEE",37,"0.13366","0.10189",0.221,0.22164,0.17733,0.17793,0.220566378790922 -"P94015","Candida albicans","I","Bloodstream","a/a","LEE",37,"0.38109","0.17592",0.3918,0.20351,0.38644,0.19029,0.500555667135302 -"SC5314","Candida albicans","I","Bloodstream","a/α","LEE",37,"0.74106","0.08601",0.77784,0.21525,0.75945,0.16494,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","LEE",37,"0.0854","0.00865",0.09276,0.02846,0.08908,0.02135,0.102403427729798 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.82793","0.12708",0.61876,0.1542,0.72335,0.17579,0.721497940120522 -"19F","Candida albicans","I","Vagina","α/α","SPI",30,"0.06744","0.04867",0.03685,0.04141,0.05215,0.0477,0.010654183832329 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",30,"0.59825","0.16603",0.52675,0.00464,0.5625,0.12276,0.551147495843174 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",30,"0.00625","0.00296",0.06599,0.03845,0.04209,0.0418,0 -"L26","Candida albicans","I","Vagina","a/a","SPI",30,"0.26736","0.11858",0.23906,0.0644,0.25321,0.09646,0.223589591519015 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.09094","0.08502",0.09485,0.08103,0.0929,0.08308,0.053811041801256 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",30,"0.38957","0.22116",0.14755,0.07015,0.26856,0.20386,0.239846223907311 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",30,"0.39665","0.29413",0.08097,0.06118,0.23881,0.26465,0.208339069929996 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.31517","0.16455",0.19525,0.11266,0.25521,0.15323,0.22570771951749 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.16614","0.06825",0.1057,0.10104,0.13592,0.09137,0.0993719750484522 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",30,"0.48708","0.30079",0.49774,0.22524,0.49241,0.26577,0.476917700136619 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",30,"0.67841","0.31215",0.35775,0.30709,0.51808,0.34868,0.504103872997045 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",30,"0.35418","0.1657",0.4791,0.10519,0.41664,0.15219,0.396672420914396 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",30,"0.76282","0.24459",0.57969,0.19947,0.67125,0.24123,0.666320705760249 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",30,"0.17878","0.10697",0.08416,0.06652,0.13147,0.10086,0.0946591402518454 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.07854","0.03972",0.0704,0.04567,0.07447,0.04299,0.0342924922953094 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",30,"0.97471","0.03686",0.99599,0.00896,0.98632,0.02782,1 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",30,"0.99913","0.00123",0.52207,0.16914,0.7606,0.26684,0.760948074092118 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",30,"0.30174","0.0561",0.40948,0.13845,0.36639,0.12468,0.343454454952713 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",30,"0.0666","0.04775",0.08923,0.0459,0.07792,0.04818,0.0379462630926787 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",30,"0.73761","0.09084",0.86549,0.13464,0.80155,0.13144,0.804316744860892 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",30,"0.92653","0.07311",0.88006,0.05069,0.9033,0.06706,0.912076506783305 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",30,"0.47941","0.04806",0.44671,0.05691,0.46306,0.05515,0.445834171758999 -"12C","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.40171","0.08558",0.48821,0.07159,0.44496,0.08997,0.49933705966463 -"19F","Candida albicans","I","Vagina","α/α","SPI",37,"0.41642","0.02187",0.2746,0.146,0.34551,0.1262,0.370063694267516 -"529L","Candida albicans","529L","Oral cavity","a/α","SPI",37,"0.28098","0.04302",0.21823,0.04747,0.24961,0.0551,0.24540491355778 -"GC75","Candida albicans","SA","Oral cavity","a/α","SPI",37,"0.15272","0.11125",0.14363,0.0057,0.14818,0.0789,0.113557779799818 -"L26","Candida albicans","I","Vagina","a/a","SPI",37,"0.24988","0.037",0.23664,0.06438,0.24194,0.05546,0.235434810867022 -"P34048","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.26382","0.07863",0.20863,0.14597,0.23622,0.12044,0.227999480046796 -"P37005","Candida albicans","I","Oral cavity","a/a","SPI",37,"0.2094","0.16055",0.20993,0.09116,0.20972,0.12368,0.193552580267776 -"P37037","Candida albicans","I","Oral cavity","a/α","SPI",37,"0.24209","0.213",0.06532,0.04082,0.15371,0.177,0.120746132848044 -"P37039","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.3642","0.08498",0.4672,0.1238,0.4157,0.11801,0.46130248277655 -"P57055","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.19619","0.05391",0.14958,0.08527,0.17289,0.07504,0.145677888989991 -"P57072","Candida albicans","II","Bloodstream","α/α","SPI",37,"0.05232","0.03199",0.06933,0.01465,0.06082,0.02629,0 -"P60002","Candida albicans","SA","Bloodstream","a/a","SPI",37,"0.53897","0.08691",0.48224,0.20257,0.5106,0.15842,0.584661380475757 -"P75010","Candida albicans","E","Bloodstream","a/α","SPI",37,"0.33646","0.14253",0.36342,0.09994,0.34994,0.12383,0.37582217600416 -"P75016","Candida albicans","SA","Bloodstream","a/α","SPI",37,"0.65615","0.05019",0.62589,0.10369,0.64102,0.08285,0.754192122708956 -"P75063","Candida albicans","SA","Bloodstream","α/-","SPI",37,"0.33137","0.06543",0.11373,0.03314,0.22255,0.12055,0.210230079292864 -"P76055","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.43061","0.00815",0.36724,0.03353,0.39259,0.0408,0.431262186403224 -"P76067","Candida albicans","II","Bloodstream","a/α","SPI",37,"0.78181","0.09756",0.8426,0.07051,0.8122,0.09038,0.97670609645132 -"P78042","Candida albicans","III","Bloodstream","a/α","SPI",37,"0.56305","0.0685",0.42333,0.0852,0.49319,0.1042,0.562030417262446 -"P78048","Candida albicans","I","Bloodstream","α/α","SPI",37,"0.20943","0.11239",0.23981,0.06562,0.22462,0.09327,0.212920837124659 -"P87","Candida albicans","SA","Oral cavity","a/a","SPI",37,"0.82561","0.16137",0.83463,0.0373,0.83012,0.1172,1 -"P94015","Candida albicans","I","Bloodstream","a/a","SPI",37,"0.59941","0.28423",0.59199,0.18482,0.5957,0.23976,0.69528142467178 -"SC5314","Candida albicans","I","Bloodstream","a/α","SPI",37,"0.65525","0.03979",0.61975,0.0301,0.6375,0.03949,0.749616534511894 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","SPI",37,"0.43027","0.05191",0.36889,0.06242,0.39958,0.06509,0.440348368646822 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.78618","0.01644",0.73301,0.06967,0.7596,0.05717,0.729699341114035 -"19F","Candida albicans","I","Vagina","α/α","YPD",30,"0.26531","0.06375",0.245,0.03492,0.25515,0.05239,0.162506465177989 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",30,"0.49648","0.04984",0.43892,0.08436,0.4677,0.07502,0.401493175020801 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",30,"0.09882","0.06738",0.12243,0.04562,0.11062,0.05873,0 -"L26","Candida albicans","I","Vagina","a/a","YPD",30,"0.67327","0.10005",0.65267,0.04901,0.66297,0.07945,0.621050619532708 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.3699","0.06271",0.24104,0.14096,0.30547,0.1267,0.219085205424003 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",30,"0.33445","0.07006",0.51052,0.05803,0.42248,0.10903,0.350648766556478 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",30,"0.45832","0.13866",0.242,0.16268,0.35016,0.18586,0.269333693134543 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",30,"0.27806","0.07975",0.19083,0.09499,0.23444,0.09795,0.139220580629202 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.46581","0.11926",0.50242,0.14036,0.48412,0.13152,0.419955474600283 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",30,"0.51701","0.03141",0.42434,0.14905,0.47068,0.11725,0.404843823787357 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",30,"0.5149","0.37242",0.42545,0.28168,0.47018,0.3332,0.404281634396996 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",30,"0.68989","0.13151",0.7232,0.1498,0.70655,0.14193,0.670051046796645 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",30,"0.61974","0.05117",0.42325,0.20437,0.52149,0.17845,0.461973509635926 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",30,"0.25119","0.01975",0.38456,0.06049,0.31787,0.08044,0.233027502304976 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",30,"0.46279","0.0582",0.26596,0.09603,0.36437,0.12645,0.285311115608626 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",30,"1.0","0.0",0.98663,0.0299,0.99271,0.02307,0.991803278688525 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",30,"0.87304","0.06833",0.72027,0.06147,0.79665,0.10029,0.771357574939846 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",30,"0.43189","0.09024",0.42998,0.08187,0.43094,0.08616,0.3601610110414 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",30,"0.46065","0.26402",0.36627,0.22954,0.41346,0.25184,0.34050686995435 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",30,"0.49668","0.11005",0.64057,0.31092,0.56862,0.24406,0.514965481571432 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",30,"1.0","0.0",1,0,1,0,1 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",30,"0.71322","0.05879",0.52849,0.0471,0.62085,0.10662,0.573691785288628 -"12C","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.68093","0.01071",0.61408,0.02662,0.64082,0.03929,0.6356663585841 -"19F","Candida albicans","I","Vagina","α/α","YPD",37,"0.10936","0.06266",0.11311,0.03415,0.11124,0.05049,0 -"529L","Candida albicans","529L","Oral cavity","a/α","YPD",37,"0.52249","0.05964",0.48237,0.11294,0.50243,0.09252,0.469553840429235 -"GC75","Candida albicans","SA","Oral cavity","a/α","YPD",37,"0.49733","0.022",0.11014,0.04516,0.30373,0.19683,0.23104992137893 -"L26","Candida albicans","I","Vagina","a/a","YPD",37,"0.67622","0.064",0.72153,0.02386,0.69887,0.05334,0.705345032468702 -"P34048","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.55893","0.06283",0.30529,0.13371,0.42058,0.16582,0.371307510412791 -"P37005","Candida albicans","I","Oral cavity","a/a","YPD",37,"0.42005","0.05842",0.40877,0.08216,0.41441,0.07151,0.363901525608863 -"P37037","Candida albicans","I","Oral cavity","a/α","YPD",37,"0.2383","0.22991",0.3949,0.11151,0.3166,0.19692,0.246498061480477 -"P37039","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.36433","0.14421",0.25377,0.08006,0.30905,0.12907,0.237435632749577 -"P57055","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.49469","0.07462",0.40608,0.15895,0.45039,0.13183,0.407089099878768 -"P57072","Candida albicans","II","Bloodstream","α/α","YPD",37,"0.64694","0.12155",0.5825,0.10295,0.61472,0.11715,0.60433796257397 -"P60002","Candida albicans","SA","Bloodstream","a/a","YPD",37,"0.44121","0.26979",0.36421,0.22243,0.40271,0.25023,0.349857761880184 -"P75010","Candida albicans","E","Bloodstream","a/α","YPD",37,"0.62849","0.03307",0.6783,0.12799,0.6534,0.09674,0.650766405396646 -"P75016","Candida albicans","SA","Bloodstream","a/α","YPD",37,"0.45649","0.08838",0.32538,0.23858,0.39094,0.19148,0.33572997563347 -"P75063","Candida albicans","SA","Bloodstream","α/-","YPD",37,"0.48191","0.0287",0.48663,0.04877,0.48427,0.04008,0.447755998607627 -"P76055","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.40027","0.02888",0.22052,0.05256,0.31039,0.09938,0.239044063809101 -"P76067","Candida albicans","II","Bloodstream","a/α","YPD",37,"0.98119","0.01927",0.9075,0.07531,0.94435,0.06617,1 -"P78042","Candida albicans","III","Bloodstream","a/α","YPD",37,"0.72383","0.0552",0.56955,0.07314,0.64669,0.10074,0.642712246882164 -"P78048","Candida albicans","I","Bloodstream","α/α","YPD",37,"0.22056","0.1053",0.13292,0.07596,0.17674,0.10173,0.0786210704468798 -"P87","Candida albicans","SA","Oral cavity","a/a","YPD",37,"0.88483","0.11788",0.82153,0.1236,0.85318,0.12485,0.890566671868061 -"P94015","Candida albicans","I","Bloodstream","a/a","YPD",37,"0.37129","0.08841",0.3182,0.09442,0.34233,0.09547,0.277382338466709 -"SC5314","Candida albicans","I","Bloodstream","a/α","YPD",37,"0.9248","0.01514",0.82914,0.12286,0.87697,0.09975,0.919122324783042 -"WO-1","Candida albicans","WO-1","Bloodstream","α/α","YPD",37,"0.56838","0.05006",0.35209,0.05282,0.46024,0.11976,0.418912268487955 diff --git a/score_wrangler.R b/score_wrangler.R deleted file mode 100644 index 98e050bccd283150ea464a8070b0576cb41c52d6..0000000000000000000000000000000000000000 --- a/score_wrangler.R +++ /dev/null @@ -1,104 +0,0 @@ -library( "caret" ) -setwd("./") - -assays = c( "adhesion", "filamentation", "invasion", "biofilm" ) -media = c( "LEE", "SPI", "YPD" ) -temps = c( "30", "37" ) - -# assays = c( "adhesion" ) -# media = c( "LEE" ) -# temps = c( "30" ) - -for ( assay in assays ){ - - file_name <- paste0(assay, "_scores_sorted.csv") - new_file_name <- paste0( "norm_", file_name ) - - if (file.exists(new_file_name)){ - - system( paste0("rm ", new_file_name)) - - } - - - data <- data.frame(read.csv( file_name )) - data <- data[ data$Species == "Candida albicans", ] - - exclude <- c( "SC5314 X SC5314 Tetraploid", "D. hansenii", "C. glabrata", "C. lusitaniae", "P94015 w/ Additional SC5314 EFG1 Allele #1", "P94015 w/ Additional SC5314 EFG1 Allele #2", "P94015 w/ SC5314 EFG1 Allele(s) Only" ) # Species and/or strains to be excluded from data - for ( bad_strains in exclude ) { - data <- data[ data$MAY.Strain.. != bad_strains, ] - } - - headers <- c(colnames( data ), "Normalized.Scores") - - for ( medium in media ){ - - med_data <- data[data$Media == medium, ] - - for ( temp in temps ){ - - temp_med_data <- med_data[ med_data$Temperature..C. == temp, ] - - length <- ncol(temp_med_data) - - usable <- as.data.frame(temp_med_data$Total.Average.Phenotype.Score) - - temporary <- preProcess(usable, method=c("range")) - - temp_med_data[,ncol(temp_med_data)+1] <- predict( temporary, usable ) - - colnames(temp_med_data) <- headers # Add the nice new headers (I'm gonna change them in the python program anyways, but I've already added this) - - write.table( temp_med_data, new_file_name, sep = ",", col.names = !file.exists(new_file_name), row.names = FALSE, append = T ) - - } - - } - - system( paste0("python3 column_clean.py ", new_file_name)) - -} - -#Make the new data frame to make the new file - -adh_df <- as.data.frame(read.csv("nc_adhesion_scores_sorted.csv")) -fil_df <- as.data.frame(read.csv("nc_filamentation_scores_sorted.csv")) -inv_df <- as.data.frame(read.csv("nc_invasion_scores_sorted.csv")) -bio_df <- as.data.frame(read.csv("nc_biofilm_scores_sorted.csv")) - -sortables <- c( "adh", "fil", "inv", "bio" ) - -adh_sorted <- adh_df[ order( adh_df[,6], adh_df[,7], adh_df[,1] ), ] -fil_sorted <- fil_df[ order( fil_df[,6], fil_df[,7], fil_df[,1] ), ] -inv_sorted <- inv_df[ order( inv_df[,6], inv_df[,7], inv_df[,1] ), ] -bio_sorted <- bio_df[ order( bio_df[,5], bio_df[,6], bio_df[,1] ), ] - -big_df <- adh_sorted[,c(1:7)] # Start the new df - -big_df$Adhesion <- adh_sorted$Total.Average.Phenotype.Score -big_df$Adhesion.stdev <- adh_sorted$Total.Phenotype.Score.St..Dev. -big_df$Adhesion.norm <- adh_sorted$Normalized.Scores - -big_df$Filamentation <- fil_sorted$Total.Average.Phenotype.Score -big_df$Filamentation.stdev <- fil_sorted$Total.Phenotype.Score.St..Dev. -big_df$Filamentation.norm <- fil_sorted$Normalized.Scores - -big_df$Invasion <- inv_sorted$Total.Average.Phenotype.Score -big_df$Invasion.stdev <- inv_sorted$Total.Phenotype.Score.St..Dev. -big_df$Invasion.norm <- inv_sorted$Normalized.Scores - -big_df$Biofilm <- bio_sorted$Total.Average.Phenotype.Score -big_df$Biofilm.stdev <- bio_sorted$Total.Phenotype.Score.St..Dev. -big_df$Biofilm.norm <- bio_sorted$Normalized.Scores - -# New file -write.csv( big_df, "compiled_data.csv", row.names = FALSE ) - -big_df$adh_fil <- big_df$Adhesion.norm + big_df$Filamentation.norm -big_df$adh_inv <- big_df$Adhesion.norm + big_df$Invasion.norm -big_df$fil_inv <- big_df$Filamentation.norm + big_df$Invasion.norm -big_df$all_sum <- big_df$Adhesion.norm + big_df$Filamentation.norm + big_df$Invasion.norm - -write.csv( big_df, "compiled_and_combination_scores_data.csv", row.names = FALSE ) - -