Commits · d583f540b91447fcf5176a499ceaf74c99c946da · Patrick Skillman-Lawrence / mhc_rank

Feb 13, 2017
- fix · d583f540
  Tim O'Donnell authored 8 years ago
  
  d583f540
Feb 12, 2017
- fix · de179804
  Tim O'Donnell authored 8 years ago
  
  de179804
- Simpler cache handling · 1c1e75c6
  Tim O'Donnell authored 8 years ago
  
  1c1e75c6
Feb 11, 2017
- More test output · 337b1039
  Tim O'Donnell authored 8 years ago
  
  337b1039
- codes cleanup · 14cf5749
  Tim O'Donnell authored 8 years ago
  
  14cf5749
- Add test for PresentationModel · ec75a7b6
  Tim O'Donnell authored 8 years ago
  
  ec75a7b6
Feb 10, 2017
- Initial implementation of antigen presentation prediction infrastructure · dfdbd8a4
  Tim O'Donnell authored 8 years ago
  
  dfdbd8a4
- remove spurious absolute mhcflurry import · fd6fdd75
  Tim O'Donnell authored 8 years ago
  
  fd6fdd75
- Merge pull request #81 from hammerlab/kubeface-model-training · 8f08993d
  Tim O'Donnell authored 8 years ago
  
  Kubeface model training
  8f08993d
- Comment tweaks · 9d5d36b0
  Tim O'Donnell authored 8 years ago
  
  9d5d36b0
Feb 09, 2017
- fix · c3cf271d
  Tim O'Donnell authored 8 years ago
  
  c3cf271d
- fixes · 2015dfd6
  Tim O'Donnell authored 8 years ago
  
  2015dfd6
Feb 04, 2017
- Update README.md · 41c0c018
  Tim O'Donnell authored 8 years ago
  
  41c0c018
Jan 09, 2017
- fixes for kubeface-based model training · 33dd8ee8
  Tim O'Donnell authored 8 years ago
  
  33dd8ee8
- Swith to using parallel_backend.map instead of parallel_backend.submit, to be... · fc26e687
  Tim O'Donnell authored 8 years ago
  
  Swith to using parallel_backend.map instead of parallel_backend.submit, to be compatable with kubeface
  fc26e687
- basic support for kubeface · bc78f82f
  Tim O'Donnell authored 8 years ago
  
  bc78f82f
- Merge pull request #73 from hammerlab/fix-setup-for-py3 · 4e3ccd35
  Alex Rubinsteyn authored 8 years ago
  
  only install futures for PY2
  4e3ccd35
- use major version by name in setup · e443254b
  Alex Rubinsteyn authored 8 years ago
  
  e443254b
- allow commas in peptide and allele strings for mhcflurry-predict, incrememented keras version · 9ef82bae
  Alex Rubinsteyn authored 8 years ago
  
  9ef82bae
- only install futures for PY2 · c116016a
  Alex Rubinsteyn authored 8 years ago
  
  c116016a
Dec 11, 2016
- Merge pull request #68 from hammerlab/pin-keras · fd492b92
  Tim O'Donnell authored 8 years ago
  
  Pin keras version
  fd492b92
- Pin keras version · 5bb1f547
  Tim O'Donnell authored 8 years ago
  
  Pin keras version. Also add note on KERAS_BACKEND to README.md. Closes #67. Closes #65.
  5bb1f547
Sep 26, 2016
- Merge pull request #60 from hammerlab/additions2 · eeb07c9a
  Tim O'Donnell authored 8 years ago
  
  Kim2014 comparison, mhcflurry-predict tool, reimplement parallelization with futures
  eeb07c9a
- update readme · 00d545ec
  Tim O'Donnell authored 8 years ago
  
  00d545ec
- Add notebook of examples · 32bdcb55
  Tim O'Donnell authored 8 years ago
  
  32bdcb55
- Update docs · 03f44c8f
  Tim O'Donnell authored 8 years ago
  
  03f44c8f
- attempt to fix travis · 9727cf7e
  Tim O'Donnell authored 8 years ago
  
  9727cf7e
- Update README · 1d1f5aef
  Tim O'Donnell authored 8 years ago
  
  1d1f5aef
- attempt to fix travis · a8dae372
  Tim O'Donnell authored 8 years ago
  
  a8dae372
- reorganize parallel code using ParallelBackend class · c6f884c5
  Tim O'Donnell authored 8 years ago
  
  c6f884c5
- Add mhcflurry-predict tool · d5f9f405
  Tim O'Donnell authored 8 years ago
  
  Fixes #54
  d5f9f405
- Tweak GENERATE scripts to disable python output buffering · a7ee0cb7
  Tim O'Donnell authored 8 years ago
  
  a7ee0cb7
- Switch off joblib in favor of concurrent.futures · 20de13c4
  Tim O'Donnell authored 8 years ago
  
  Fixes #59
  20de13c4
- tweak travis · 573c0736
  Tim O'Donnell authored 8 years ago
  
  573c0736
- Update models_class1_allele_specific_single_kim2014_only to use... · f052583d
  Tim O'Donnell authored 8 years ago
  
  Update models_class1_allele_specific_single_kim2014_only to use hyperparameters roughly the same as preprint
  f052583d
- Fix Dockerfile to use theano backend for now · a3d88172
  Tim O'Donnell authored 8 years ago
  
  a3d88172
- First pass on models_class1_allele_specific_single_kim2014_only · 7cd518a6
  Tim O'Donnell authored 8 years ago
  
  7cd518a6
- fix keras backend=theano in travis config · 7b293d95
  Tim O'Donnell authored 8 years ago
  
  7b293d95
- mhcflurry.predict can now work with custom model loaders · c1189219
  Tim O'Donnell authored 8 years ago
  
  c1189219
Sep 17, 2016
- Add units to readme · 770a1e21
  Tim O'Donnell authored 8 years ago
  
  770a1e21