Commits · cb88dac8c3c6a3dce91148a18e08edee77ed4762 · Patrick Skillman-Lawrence / mhc_rank · GitLab

Snippets Groups Projects

Mar 24, 2017
- rename Dataset to AffinityMeasurementDataset, fix bug in tests/test_ensemble.py · 73ad3f22
  Tim O'Donnell authored 8 years ago
  
  73ad3f22
- move measurement collection to parent module · 3e4ab623
  Tim O'Donnell authored 8 years ago
  
  3e4ab623
- First cut on class1 ensemble models · 1d0a6813
  Tim O'Donnell authored 8 years ago
  
  1d0a6813
Sep 26, 2016
- mhcflurry.predict can now work with custom model loaders · c1189219
  Tim O'Donnell authored 8 years ago
  
  c1189219
Jun 03, 2016
- if no imputation, return empty Dataset · 274d769a
  Alex Rubinsteyn authored 8 years ago
  
  274d769a
Jun 02, 2016
- skip imputation in Dataset method if algorithm is 'none' · fc1e981a
  Alex Rubinsteyn authored 8 years ago
  
  fc1e981a
- Moving shared functionality from deep within Dataset to helper functions in common.py · 9508c208
  Alex Rubinsteyn authored 8 years ago
  
  9508c208
- pass dropout to Embedding instead of creating Dropout layer · 53496d26
  Alex Rubinsteyn authored 8 years ago
  
  53496d26
May 21, 2016
- updates to dataset size sensitivity script · 52a88ace
  Alex Rubinsteyn authored 8 years ago
  
  52a88ace
May 19, 2016
- using stratified sampling for dataset size sensitivity · d122c743
  Alex Rubinsteyn authored 8 years ago
  
  d122c743
- faster algorithm for converting Dataset to nested dictionary · 8c5a4ca5
  Alex Rubinsteyn authored 8 years ago
  
  8c5a4ca5
May 18, 2016
- added intersection operator to Dataset · 180575f6
  Alex Rubinsteyn authored 8 years ago
  
  180575f6
May 17, 2016
- added cross_validation iterator to Dataset · 4b337b22
  Alex Rubinsteyn authored 8 years ago
  
  4b337b22
- added helpers to Dataset · 37e0372b
  Alex Rubinsteyn authored 8 years ago
  
  37e0372b
May 14, 2016
- added Dataset tests · 2c380b44
  Alex Rubinsteyn authored 8 years ago
  
  2c380b44
May 13, 2016
- added min_ arguments to to_dense_pMHC_matrix · a2e339d5
  Alex Rubinsteyn authored 8 years ago
  
  a2e339d5
- added random negative samples to training · ce1bbda1
  Alex Rubinsteyn authored 8 years ago
  
  ce1bbda1
- added dataset-size-sensitivity script · 7fef98d0
  Alex Rubinsteyn authored 8 years ago
  
  7fef98d0
May 11, 2016
- small fixes · 629baf60
  Alex Rubinsteyn authored 8 years ago
  
  629baf60
May 10, 2016
- working on liberating the titration script from the experiments directory · d1aa3d76
  Alex Rubinsteyn authored 8 years ago
  
  d1aa3d76
- fixed obscure shape bug on empty arrays · fa353a34
  Alex Rubinsteyn authored 8 years ago
  
  fa353a34
May 09, 2016
- fixing training script · 345869a0
  Alex Rubinsteyn authored 8 years ago
  
  345869a0
- imputation seems to be better than not for A0205 · f661d99f
  Alex Rubinsteyn authored 8 years ago
  
  f661d99f
- moved main impute method onto Dataset · 294f70ee
  Alex Rubinsteyn authored 8 years ago
  
  294f70ee
- debugging imputation with Dataset · bb35d247
  Alex Rubinsteyn authored 8 years ago
  
  bb35d247
May 06, 2016
- changed load_allele_datasets test to work on Datatset, added quality over datasets · 14705f3f
  Alex Rubinsteyn authored 8 years ago
  
  14705f3f
- changing imputation logic to use Dataset · ec233b8c
  Alex Rubinsteyn authored 8 years ago
  
  ec233b8c
- moving encoding to dataset · 9e3c4c8b
  Alex Rubinsteyn authored 8 years ago
  
  9e3c4c8b
- fixed class1_binding_predictor tests · 5a66b6fa
  Alex Rubinsteyn authored 8 years ago
  
  5a66b6fa
- split up some of the class1_binding_predictor methods, moved code to... · ca453c69
  Alex Rubinsteyn authored 8 years ago
  
  split up some of the class1_binding_predictor methods, moved code to training_helpers and Dataset, fixing broken unit tests
  ca453c69
May 05, 2016
- added Dataset module · 682b7930
  Alex Rubinsteyn authored 8 years ago
  
  682b7930