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  1. Nov 14, 2017
  2. Nov 13, 2017
  3. Oct 13, 2017
  4. Aug 10, 2017
  5. May 25, 2017
  6. May 24, 2017
  7. Mar 24, 2017
  8. Feb 04, 2017
  9. Dec 11, 2016
    • Tim O'Donnell's avatar
      Pin keras version · 5bb1f547
      Tim O'Donnell authored
      Pin keras version. Also add note on KERAS_BACKEND to README.md.
      
      Closes #67. Closes #65.
      5bb1f547
  10. Sep 26, 2016
  11. Sep 17, 2016
  12. Sep 16, 2016
  13. Sep 15, 2016
    • Tim O'Donnell's avatar
      Big refactor to prepare for release · 942601b3
      Tim O'Donnell authored
      Lazily putting this all in one commit.
      
      * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command)
      * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models
      * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone)
      * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`)
      * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors
      * make Class1BindingPredictor pickleable and remove old serialization code
      * move code particular to class 1 allele-specific predictors into its own submodule
      * remove unused code including arg parsing, plotting, and ensembles
      * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py)
      * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed
      * update README
      942601b3
  14. Aug 03, 2016
  15. Jun 24, 2016
  16. Apr 28, 2016
  17. Apr 21, 2016
    • Tim O'Donnell's avatar
      Minor fixes · eefe769e
      Tim O'Donnell authored
       - Add default values and usage to argparse help messages
       - Require theano >=0.8.2 (was getting errors instantiating a model at 0.7.0)
      eefe769e
  18. Apr 20, 2016
  19. Apr 19, 2016
  20. Jul 14, 2015
  21. Jun 29, 2015
  22. Jun 28, 2015
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