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  1. Nov 13, 2017
  2. Oct 13, 2017
  3. Aug 16, 2017
  4. Aug 15, 2017
  5. Jul 27, 2017
  6. May 25, 2017
  7. May 24, 2017
  8. May 22, 2017
  9. May 17, 2017
  10. Mar 24, 2017
  11. Feb 09, 2017
  12. Jan 09, 2017
  13. Dec 11, 2016
    • Tim O'Donnell's avatar
      Pin keras version · 5bb1f547
      Tim O'Donnell authored
      Pin keras version. Also add note on KERAS_BACKEND to README.md.
      
      Closes #67. Closes #65.
      5bb1f547
  14. Sep 26, 2016
  15. Sep 17, 2016
  16. Sep 15, 2016
    • Tim O'Donnell's avatar
      Big refactor to prepare for release · 942601b3
      Tim O'Donnell authored
      Lazily putting this all in one commit.
      
      * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command)
      * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models
      * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone)
      * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`)
      * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors
      * make Class1BindingPredictor pickleable and remove old serialization code
      * move code particular to class 1 allele-specific predictors into its own submodule
      * remove unused code including arg parsing, plotting, and ensembles
      * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py)
      * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed
      * update README
      942601b3
  17. Jul 12, 2016
  18. May 21, 2016
  19. May 09, 2016
  20. Apr 29, 2016
  21. Apr 21, 2016
    • Tim O'Donnell's avatar
      Minor fixes · eefe769e
      Tim O'Donnell authored
       - Add default values and usage to argparse help messages
       - Require theano >=0.8.2 (was getting errors instantiating a model at 0.7.0)
      eefe769e
  22. Apr 20, 2016
  23. Apr 19, 2016
  24. Feb 17, 2016
  25. Jul 14, 2015
  26. Jun 29, 2015
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