pudate

downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf

 #!/bin/bash
 #BSUB -J MHCf-{work_item_num} # Job name
 #BSUB -P acc_nkcancer # allocation account or Unix group
-#BSUB -q normal # queue
+#BSUB -q gpu # queue
+#BSUB -R rusage[ngpus_excl_p=1]  # 1 exclusive GPU
 #BSUB -R span[hosts=1] # one node
 #BSUB -n 1 # number of compute cores
-#BSUB -W 36:00 # walltime in HH:MM
+#BSUB -W 46:00 # walltime in HH:MM
 #BSUB -R rusage[mem=30000] # mb memory requested
 #BSUB -o {work_dir}/%J.stdout # output log (%J : JobID)
 #BSUB -eo {work_dir}/%J.stderr # error log
 #BSUB -L /bin/bash # Initialize the execution environment
 #
-#IGNORE -R rusage[ngpus_excl_p=1]  # 1 exclusive GPU
 
 export TMPDIR=/local/JOBS/mhcflurry-{work_item_num}
-export PATH=$HOME/.conda/envs/tf-cpu/bin/:$PATH
+export PATH=$HOME/.conda/envs/py36b/bin/:$PATH
 export PYTHONUNBUFFERED=1
-
-# See https://www.tensorflow.org/guide/performance/overview
-export KMP_AFFINITY=granularity=fine,verbose,compact,1,0
 export KMP_SETTINGS=1
-export KMP_BLOCKTIME=0
-export OMP_NUM_THREADS=16
 
 set -e
 free -m
 
-#module load cuda/10.1.105
-#module load cudnn/7.1.1
+module load cuda/10.1.105
+module load cudnn/7.1.1
 
+env
 
 cd {work_dir}