From ccda3846c05aefd77be2c5d9f8becb0f15f8e624 Mon Sep 17 00:00:00 2001
From: Timothy ODonnell <odonnt02@li03c03.chimera.hpc.mssm.edu>
Date: Tue, 30 Jul 2019 12:13:58 -0400
Subject: [PATCH] pudate
---
.../cluster_submit_script_header.mssm_hpc.lsf | 18 +++++++-----------
1 file changed, 7 insertions(+), 11 deletions(-)
diff --git a/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf b/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf
index a5199e86..28a5e157 100644
--- a/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf
+++ b/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf
@@ -1,33 +1,29 @@
#!/bin/bash
#BSUB -J MHCf-{work_item_num} # Job name
#BSUB -P acc_nkcancer # allocation account or Unix group
-#BSUB -q normal # queue
+#BSUB -q gpu # queue
+#BSUB -R rusage[ngpus_excl_p=1] # 1 exclusive GPU
#BSUB -R span[hosts=1] # one node
#BSUB -n 1 # number of compute cores
-#BSUB -W 36:00 # walltime in HH:MM
+#BSUB -W 46:00 # walltime in HH:MM
#BSUB -R rusage[mem=30000] # mb memory requested
#BSUB -o {work_dir}/%J.stdout # output log (%J : JobID)
#BSUB -eo {work_dir}/%J.stderr # error log
#BSUB -L /bin/bash # Initialize the execution environment
#
-#IGNORE -R rusage[ngpus_excl_p=1] # 1 exclusive GPU
export TMPDIR=/local/JOBS/mhcflurry-{work_item_num}
-export PATH=$HOME/.conda/envs/tf-cpu/bin/:$PATH
+export PATH=$HOME/.conda/envs/py36b/bin/:$PATH
export PYTHONUNBUFFERED=1
-
-# See https://www.tensorflow.org/guide/performance/overview
-export KMP_AFFINITY=granularity=fine,verbose,compact,1,0
export KMP_SETTINGS=1
-export KMP_BLOCKTIME=0
-export OMP_NUM_THREADS=16
set -e
free -m
-#module load cuda/10.1.105
-#module load cudnn/7.1.1
+module load cuda/10.1.105
+module load cudnn/7.1.1
+env
cd {work_dir}
--
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