Merge pull request #84 from hammerlab/add-class1-ensemble-rebased (cb88dac8) · Commits · Patrick Skillman-Lawrence / mhc_rank · GitLab

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cb88dac8

Commit cb88dac8 authored 8 years ago by Tim O'Donnell Committed by GitHub 8 years ago

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Merge pull request #84 from hammerlab/add-class1-ensemble-rebased

Add class1 ensemble models, with model selection using imputation

parents e93299b6 741d873e

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Changes 54

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requirements.txt 1 addition, 1 deletion

requirements.txt
setup.py 9 additions, 3 deletions

setup.py
test/__init__.py 11 additions, 0 deletions

test/__init__.py
test/test_affinity_measurement_dataset.py 11 additions, 11 deletions

test/test_affinity_measurement_dataset.py
test/test_antigen_presentation.py 24 additions, 12 deletions

test/test_antigen_presentation.py
test/test_class1_allele_specific_cv_and_train_command.py 7 additions, 3 deletions

test/test_class1_allele_specific_cv_and_train_command.py
test/test_class1_binding_predictor_A0205.py 3 additions, 3 deletions

test/test_class1_binding_predictor_A0205.py
test/test_class1_binding_predictor_with_dummy_models.py 15 additions, 11 deletions

test/test_class1_binding_predictor_with_dummy_models.py
test/test_cross_validation.py 5 additions, 3 deletions

test/test_cross_validation.py
test/test_ensemble.py 203 additions, 0 deletions

test/test_ensemble.py
test/test_imputation.py 5 additions, 5 deletions

test/test_imputation.py
test/test_known_class1_epitopes.py 21 additions, 19 deletions

test/test_known_class1_epitopes.py
test/test_load_allele_datasets.py 2 additions, 2 deletions

test/test_load_allele_datasets.py
test/test_predict.py 14 additions, 0 deletions

test/test_predict.py

with 331 additions and 73 deletions

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