Merge pull request #84 from hammerlab/add-class1-ensemble-rebased
Add class1 ensemble models, with model selection using imputation
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- .travis.yml 2 additions, 0 deletions.travis.yml
- Dockerfile 3 additions, 5 deletionsDockerfile
- README.md 37 additions, 17 deletionsREADME.md
- downloads-generation/data_combined_iedb_kim2014/create-combined-class1-dataset.py 1 addition, 1 deletion...a_combined_iedb_kim2014/create-combined-class1-dataset.py
- downloads-generation/models_class1_allele_specific_ensemble/GENERATE.sh 53 additions, 0 deletions...ration/models_class1_allele_specific_ensemble/GENERATE.sh
- downloads-generation/models_class1_allele_specific_ensemble/README.md 29 additions, 0 deletions...neration/models_class1_allele_specific_ensemble/README.md
- downloads-generation/models_class1_allele_specific_ensemble/models-summary/README.md 12 additions, 0 deletions..._class1_allele_specific_ensemble/models-summary/README.md
- downloads-generation/models_class1_allele_specific_ensemble/models-summary/report.html 18543 additions, 0 deletions...lass1_allele_specific_ensemble/models-summary/report.html
- downloads-generation/models_class1_allele_specific_ensemble/models-summary/report.ipynb 1093 additions, 0 deletions...ass1_allele_specific_ensemble/models-summary/report.ipynb
- downloads-generation/models_class1_allele_specific_ensemble/models.py 24 additions, 0 deletions...neration/models_class1_allele_specific_ensemble/models.py
- examples/class1_allele_specific_models.ipynb 155 additions, 166 deletionsexamples/class1_allele_specific_models.ipynb
- mhcflurry/__init__.py 9 additions, 1 deletionmhcflurry/__init__.py
- mhcflurry/affinity_measurement_dataset.py 34 additions, 31 deletionsmhcflurry/affinity_measurement_dataset.py
- mhcflurry/antigen_presentation/__init__.py 2 additions, 1 deletionmhcflurry/antigen_presentation/__init__.py
- mhcflurry/antigen_presentation/presentation_component_models/expression.py 1 addition, 1 deletion..._presentation/presentation_component_models/expression.py
- mhcflurry/antigen_presentation/presentation_component_models/fixed_affinity_predictions.py 3 additions, 0 deletions...esentation_component_models/fixed_affinity_predictions.py
- mhcflurry/antigen_presentation/presentation_component_models/mhc_binding_component_model_base.py 1 addition, 1 deletion...tion_component_models/mhc_binding_component_model_base.py
- mhcflurry/antigen_presentation/presentation_component_models/mhcflurry_released.py 22 additions, 8 deletions...ation/presentation_component_models/mhcflurry_released.py
- mhcflurry/antigen_presentation/presentation_component_models/mhcflurry_trained_on_hits.py 3 additions, 3 deletions...resentation_component_models/mhcflurry_trained_on_hits.py
- mhcflurry/antigen_presentation/presentation_component_models/presentation_component_model.py 9 additions, 2 deletions...entation_component_models/presentation_component_model.py
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