From c055ef50f6bd6a567aa2579975a0f7719fcff25f Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Mon, 31 Jul 2017 10:33:20 -0400
Subject: [PATCH] Parallelize models_class1_experiments1 GENERATE script
---
downloads-generation/models_class1_experiments1/GENERATE.sh | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/downloads-generation/models_class1_experiments1/GENERATE.sh b/downloads-generation/models_class1_experiments1/GENERATE.sh
index 989fb5ce..50d39f49 100755
--- a/downloads-generation/models_class1_experiments1/GENERATE.sh
+++ b/downloads-generation/models_class1_experiments1/GENERATE.sh
@@ -31,7 +31,7 @@ time mhcflurry-class1-train-allele-specific-models \
--only-quantitative \
--hyperparameters hyperparameters-standard.json \
--out-models-dir models-standard-quantitative \
- --min-measurements-per-allele 100
+ --min-measurements-per-allele 100 &
# Model variations on qualitative + quantitative
for mod in 0local_noL1 0local 1local dense16 dense64 noL1
@@ -42,8 +42,9 @@ do
--data "$(mhcflurry-downloads path data_curated)/curated_training_data.csv.bz2" \
--hyperparameters hyperparameters-${mod}.json \
--out-models-dir models-${mod} \
- --min-measurements-per-allele 100
+ --min-measurements-per-allele 100 &
done
+wait
cp $SCRIPT_ABSOLUTE_PATH .
bzip2 LOG.txt
--
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