Merge pull request #25 from hammerlab/any-kmer-size
Generalized the fixed vector encoding length and moved around some components for testability
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- .travis.yml 1 addition, 0 deletions.travis.yml
- mhcflurry/amino_acid.py 3 additions, 0 deletionsmhcflurry/amino_acid.py
- mhcflurry/class1_binding_predictor.py 59 additions, 60 deletionsmhcflurry/class1_binding_predictor.py
- mhcflurry/common.py 0 additions, 35 deletionsmhcflurry/common.py
- mhcflurry/data.py 2 additions, 2 deletionsmhcflurry/data.py
- mhcflurry/ensemble.py 1 addition, 1 deletionmhcflurry/ensemble.py
- mhcflurry/feedforward.py 22 additions, 51 deletionsmhcflurry/feedforward.py
- mhcflurry/feedforward_hyperparameters.py 20 additions, 1 deletionmhcflurry/feedforward_hyperparameters.py
- mhcflurry/imputation.py 1 addition, 1 deletionmhcflurry/imputation.py
- mhcflurry/predictor_base.py 28 additions, 18 deletionsmhcflurry/predictor_base.py
- mhcflurry/regression_target.py 51 additions, 0 deletionsmhcflurry/regression_target.py
- mhcflurry/serialization_helpers.py 45 additions, 14 deletionsmhcflurry/serialization_helpers.py
- mhcflurry/training_helpers.py 43 additions, 0 deletionsmhcflurry/training_helpers.py
- script/mhcflurry-train-class1-allele-specific-models.py 6 additions, 15 deletionsscript/mhcflurry-train-class1-allele-specific-models.py
- test/test_class1_binding_predictor.py 0 additions, 9 deletionstest/test_class1_binding_predictor.py
- test/test_imputation.py 14 additions, 1 deletiontest/test_imputation.py
- test/test_neural_nets.py 50 additions, 9 deletionstest/test_neural_nets.py
- test/test_peptide_encoding.py 0 additions, 0 deletionstest/test_peptide_encoding.py
- test/test_regression_target.py 1 addition, 1 deletiontest/test_regression_target.py
- test/test_serialization.py 30 additions, 0 deletionstest/test_serialization.py
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