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Commit a1a2cdb8 authored by Tim O'Donnell's avatar Tim O'Donnell
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update tests

parent b26a9392
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......@@ -96,6 +96,7 @@ def test_a1_known_epitopes_in_newly_trained_model():
allele=allele,
peptides=df.peptide.values,
affinities=df.measurement_value.values,
verbose=0,
)
predict_and_check("HLA-A*01:01", "EVDPIGHLY", predictor=predictor)
......@@ -157,6 +158,7 @@ def test_class1_affinity_predictor_a0205_memorize_training_data():
allele=allele,
peptides=df.peptide.values,
affinities=df.measurement_value.values,
verbose=0,
)
predictor.calibrate_percentile_ranks(num_peptides_per_length=1000)
ic50_pred = predictor.predict(df.peptide.values, allele=allele)
......
......@@ -13,6 +13,7 @@ from mhcflurry.class1_neural_network import Class1NeuralNetwork
from mhcflurry.downloads import get_path
from mhcflurry.common import random_peptides
def test_class1_neural_network_a0205_training_accuracy():
# Memorize the dataset.
hyperparameters = dict(
......@@ -80,7 +81,7 @@ def test_class1_neural_network_a0205_training_accuracy():
dense_layer_l1_regularization=0.0,
dropout_probability=0.0)
predictor2 = Class1NeuralNetwork(**hyperparameters2)
predictor2.fit(df.peptide.values, df.measurement_value.values)
predictor2.fit(df.peptide.values, df.measurement_value.values, verbose=0)
eq_(predictor.network().to_json(), predictor2.network().to_json())
......
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