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Commit 78cdb265 authored by Tim O'Donnell's avatar Tim O'Donnell
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fix

parent 1ca484c7
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......@@ -8,6 +8,9 @@ SCRATCH_DIR=${TMPDIR-/tmp}/mhcflurry-downloads-generation
SCRIPT_ABSOLUTE_PATH="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)/$(basename "${BASH_SOURCE[0]}")"
SCRIPT_DIR=$(dirname "$SCRIPT_ABSOLUTE_PATH")
# Terminate children on exit
trap "trap - SIGTERM && kill -- -$$" SIGINT SIGTERM EXIT
mkdir -p "$SCRATCH_DIR"
rm -rf "$SCRATCH_DIR/$DOWNLOAD_NAME"
mkdir "$SCRATCH_DIR/$DOWNLOAD_NAME"
......@@ -37,7 +40,7 @@ time mhcflurry-class1-train-allele-specific-models \
--allele $ALLELES 2>&1 | tee -a LOG.standard.txt &
# Model variations on qualitative + quantitative
for mod in 0local_noL1 0local 2local widelocal dense8 dense16 dense64 noL1 onehot embedding
for mod in 0local_noL1 0local 2local widelocal dense8 dense32 dense64 noL1 onehot embedding
do
cp $SCRIPT_DIR/hyperparameters-${mod}.yaml .
mkdir models-${mod}
......
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