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    942601b3
    Big refactor to prepare for release · 942601b3
    Tim O'Donnell authored
    Lazily putting this all in one commit.
    
    * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command)
    * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models
    * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone)
    * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`)
    * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors
    * make Class1BindingPredictor pickleable and remove old serialization code
    * move code particular to class 1 allele-specific predictors into its own submodule
    * remove unused code including arg parsing, plotting, and ensembles
    * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py)
    * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed
    * update README
    942601b3
    History
    Big refactor to prepare for release
    Tim O'Donnell authored
    Lazily putting this all in one commit.
    
    * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command)
    * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models
    * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone)
    * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`)
    * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors
    * make Class1BindingPredictor pickleable and remove old serialization code
    * move code particular to class 1 allele-specific predictors into its own submodule
    * remove unused code including arg parsing, plotting, and ensembles
    * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py)
    * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed
    * update README