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Commit f3801341 authored by Robert Fillinger's avatar Robert Fillinger
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More file cleanup

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adhesion_scores_sorted.csv deleted 100644 → 0
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MAY Strain #,Species,Soll Clade,Isolation Site, MTL Genotype, Media,Temperature(°C),MJD Phenotype Score,MJD Score St. Dev.,RJF Phenotype Score,RJF Score St. Dev.,Total Average Phenotype Score,Total Phenotype Score St. Dev.
12C,Candida albicans,I,Oral cavity,a/a,SPI,30,0.03713,0.03013,0.15927,0.0677,0.0982,0.08047
12C,Candida albicans,I,Oral cavity,a/a,LEE,30,0.40436,0.05654,0.32061,0.08573,0.36248,0.08383
12C,Candida albicans,I,Oral cavity,a/a,YPD,37,0.36551,0.10623,0.5587,0.02997,0.48142,0.11837
12C,Candida albicans,I,Oral cavity,a/a,YPD,30,0.39405,0.04549,0.56385,0.08526,0.47895,0.10898
12C,Candida albicans,I,Oral cavity,a/a,SPI,37,0.16356,0.08142,0.17102,0.04669,0.16729,0.06647
12C,Candida albicans,I,Oral cavity,a/a,LEE,37,0.25164,0.11526,0.1191,0.06192,0.18537,0.1138
19F,Candida albicans,I,Vagina,α/α,LEE,37,0.22801,0.12081,0.12552,0.10411,0.17677,0.12387
19F,Candida albicans,I,Vagina,α/α,SPI,30,0.1376,0.10131,0.07287,0.01717,0.10524,0.07954
19F,Candida albicans,I,Vagina,α/α,SPI,37,0.14409,0.07049,0.06683,0.05303,0.10546,0.07337
19F,Candida albicans,I,Vagina,α/α,LEE,30,0.15948,0.05864,0.24497,0.06442,0.20222,0.07498
19F,Candida albicans,I,Vagina,α/α,YPD,30,0.46491,0.11488,0.48053,0.09357,0.47272,0.10506
19F,Candida albicans,I,Vagina,α/α,YPD,37,0.43244,0.03875,0.60468,0.09646,0.51856,0.11322
529L,Candida albicans,529L,Oral cavity,a/α,SPI,30,0.2137,0.09117,0.11156,0.02141,0.16263,0.08362
529L,Candida albicans,529L,Oral cavity,a/α,YPD,37,0.78417,0.17975,0.65753,0.12574,0.72085,0.16754
529L,Candida albicans,529L,Oral cavity,a/α,YPD,30,0.61432,0.0298,0.66708,0.08144,0.6407,0.06675
529L,Candida albicans,529L,Oral cavity,a/α,LEE,30,0.1274,0.01752,0.15739,0.04949,0.14239,0.04004
529L,Candida albicans,529L,Oral cavity,a/α,SPI,37,0.11518,0.02917,0.02711,0.0122,0.07115,0.04939
529L,Candida albicans,529L,Oral cavity,a/α,LEE,37,0.32246,0.028,0.37487,0.05085,0.34866,0.0487
C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,30,0.1106,0.07098,0.17762,0.08898,0.14411,0.08718
C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,30,0.1166,0.06431,0.1276,0.09723,0.1221,0.08261
C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,37,0.363,0.22484,0.87454,0.05444,0.61877,0.3036
C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,37,0.58867,0.06289,0.51675,0.16144,0.55271,0.12768
C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,37,0.38167,0.1163,0.49621,0.13588,0.43894,0.13883
C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,30,0.64324,0.13186,0.57842,0.12185,0.61083,0.13103
C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,30,0.0,0.0,0.0,0.0,0.0,0.0
C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,37,0.0,0.0,0.33333,0.4714,0.16667,0.37268
C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,30,0.0,0.0,0.0,0.0,0.0,0.0
C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,37,0.96132,0.0547,0.97119,0.04074,0.96626,0.04848
C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,37,0.5,0.5,0.0,0.0,0.25,0.43301
C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,30,0.95232,0.06742,1.0,0.0,0.97616,0.0533
C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,37,0.53917,0.24154,0.54145,0.32472,0.54031,0.28617
C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,30,0.73122,0.06332,0.65236,0.08344,0.69179,0.08391
C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,37,0.70275,0.11313,0.69341,0.21885,0.69808,0.17427
C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,30,0.47599,0.13493,0.54959,0.10899,0.51279,0.12805
C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,37,1.0,0.0,0.82855,0.20983,0.91427,0.17135
C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,30,0.92941,0.09983,0.84609,0.02798,0.88775,0.08432
C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,30,0.17364,0.07044,0.15556,0.10596,0.1646,0.09042
C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,30,0.6432,0.06083,0.62029,0.11787,0.63175,0.09449
C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,37,0.09144,0.02681,0.03548,0.00773,0.06346,0.03424
C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,37,0.52271,0.0704,0.58121,0.18419,0.55196,0.14246
C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,37,0.0,0.0,0.21569,0.30503,0.10784,0.24114
C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,30,0.0,0.0,0.00612,0.00865,0.00306,0.00684
C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.20447,0.09598,0.19584,0.05468,0.20015,0.07823
C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.78877,0.1148,0.82058,0.04438,0.80468,0.08847
C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,30,0.71741,0.1461,0.78816,0.1207,0.75278,0.13859
C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.39021,0.18145,0.66317,0.14073,0.52669,0.21211
C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.53846,0.10953,0.8349,0.05896,0.68668,0.17235
C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.1717,0.0902,0.11113,0.02386,0.14142,0.07259
C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,30,0.73248,0.13058,0.6851,0.05631,0.70879,0.10331
C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,37,0.28079,0.0416,0.24916,0.05013,0.26498,0.0487
C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,37,0.24526,0.14999,0.25426,0.09412,0.24976,0.12529
C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,30,0.18359,0.04182,0.18709,0.073,0.18534,0.05951
C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,30,0.25836,0.04938,0.28,0.13417,0.26918,0.10167
C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,37,0.81214,0.09229,0.67462,0.10544,0.74338,0.1206
C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,30,1.0,0.0,1.0,0.0,1.0,0.0
C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.18945,0.04981,0.1377,0.0693,0.16357,0.06566
C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.72724,0.26036,0.74607,0.2246,0.73666,0.24332
C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.97022,0.04212,0.83238,0.19265,0.9013,0.15554
C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.88895,0.14188,0.95878,0.05363,0.92387,0.11279
C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.53441,0.15259,0.50175,0.25047,0.51808,0.20803
C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,30,0.81682,0.14696,0.92791,0.07875,0.87237,0.13032
C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,37,0.91357,0.06772,0.92002,0.1131,0.9168,0.09327
C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,30,0.21085,0.15241,0.4305,0.27671,0.32067,0.24892
C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,30,0.72154,0.12364,0.73524,0.1245,0.72839,0.12426
C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,37,0.96142,0.032,0.88913,0.08039,0.92527,0.07106
C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,37,0.53362,0.1294,0.44662,0.20681,0.49012,0.1779
D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,30,0.32103,0.12337,0.11784,0.04957,0.21943,0.13842
D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,30,0.04362,0.05098,0.02173,0.02942,0.03268,0.04303
D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,30,0.69613,0.01115,0.80939,0.10728,0.75276,0.09499
D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,37,0.0,0.0,0.0,0.0,0.0,0.0
D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,37,0.0,0.0,-,-,0.0,0.0
D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,37,0.0,0.0,0.0,0.0,0.0,0.0
GC75,Candida albicans,SA,Oral cavity,a/α,YPD,30,0.50564,0.08554,0.62897,0.09409,0.56731,0.10903
GC75,Candida albicans,SA,Oral cavity,a/α,LEE,37,0.10527,0.00646,0.03499,0.00405,0.07013,0.03555
GC75,Candida albicans,SA,Oral cavity,a/α,SPI,30,0.04399,0.02055,0.13808,0.04951,0.09103,0.06041
GC75,Candida albicans,SA,Oral cavity,a/α,LEE,30,0.31109,0.08324,0.24456,0.04805,0.27783,0.07567
GC75,Candida albicans,SA,Oral cavity,a/α,YPD,37,0.46326,0.07061,0.51721,0.08596,0.49024,0.08315
GC75,Candida albicans,SA,Oral cavity,a/α,SPI,37,0.13688,0.03178,0.0628,0.01808,0.09984,0.04517
L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,30,0.70312,0.06585,0.91837,0.07486,0.81075,0.12866
L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,37,0.10941,0.07339,0.08504,0.06251,0.09722,0.06924
L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,30,0.38834,0.0919,0.37605,0.01001,0.3822,0.06565
L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,37,0.76608,0.13441,0.7632,0.09497,0.76464,0.11638
L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,37,0.22106,0.19965,0.04061,0.01114,0.13083,0.16773
L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,30,0.04232,0.01668,0.04982,0.05383,0.04607,0.04003
L26,Candida albicans,I,Vagina,a/a,YPD,37,0.50838,0.06669,0.63416,0.10398,0.57127,0.10763
L26,Candida albicans,I,Vagina,a/a,SPI,37,0.00753,0.0075,0.00427,0.0029,0.00557,0.00548
L26,Candida albicans,I,Vagina,a/a,LEE,37,0.06624,0.0356,0.09794,0.07738,0.08209,0.06228
L26,Candida albicans,I,Vagina,a/a,SPI,30,0.06118,0.0323,0.04371,0.0123,0.05245,0.02595
L26,Candida albicans,I,Vagina,a/a,YPD,30,0.59612,0.10421,0.55963,0.10643,0.57788,0.10689
L26,Candida albicans,I,Vagina,a/a,LEE,30,0.11858,0.02737,0.19708,0.02142,0.15783,0.04631
P34048,Candida albicans,III,Bloodstream,a/α,LEE,37,0.23132,0.05614,0.06809,0.02142,0.1497,0.09202
P34048,Candida albicans,III,Bloodstream,a/α,SPI,30,0.07587,0.05797,0.11829,0.06029,0.09708,0.06283
P34048,Candida albicans,III,Bloodstream,a/α,SPI,37,0.16561,0.08857,0.08871,0.06018,0.12716,0.08492
P34048,Candida albicans,III,Bloodstream,a/α,YPD,37,0.50186,0.17053,0.63349,0.14099,0.57366,0.16839
P34048,Candida albicans,III,Bloodstream,a/α,YPD,30,0.65115,0.19124,0.54811,0.15243,0.59963,0.18044
P34048,Candida albicans,III,Bloodstream,a/α,LEE,30,0.26181,0.07878,0.15512,0.07884,0.20847,0.09517
P37005,Candida albicans,I,Oral cavity,a/a,LEE,37,0.12591,0.02525,0.03691,0.02207,0.08141,0.05043
P37005,Candida albicans,I,Oral cavity,a/a,LEE,30,0.08135,0.02328,0.24382,0.09556,0.16258,0.10694
P37005,Candida albicans,I,Oral cavity,a/a,YPD,30,0.70757,0.21187,0.88699,0.11268,0.79728,0.19194
P37005,Candida albicans,I,Oral cavity,a/a,YPD,37,0.51884,0.04168,0.50801,0.02032,0.51342,0.03323
P37005,Candida albicans,I,Oral cavity,a/a,SPI,30,0.10218,0.07352,0.0792,0.05128,0.09069,0.06442
P37005,Candida albicans,I,Oral cavity,a/a,SPI,37,0.00339,0.00277,0.02131,0.00775,0.01414,0.01078
P37037,Candida albicans,I,Oral cavity,a/α,SPI,30,0.10666,0.05126,0.21475,0.14279,0.1607,0.12012
P37037,Candida albicans,I,Oral cavity,a/α,YPD,30,0.79183,0.22266,0.68098,0.15271,0.73641,0.1988
P37037,Candida albicans,I,Oral cavity,a/α,LEE,30,0.3105,0.08328,0.23153,0.09308,0.27102,0.09674
P37037,Candida albicans,I,Oral cavity,a/α,YPD,37,0.4938,0.12506,0.52802,0.15591,0.51091,0.14236
P37037,Candida albicans,I,Oral cavity,a/α,LEE,37,0.64167,0.27566,0.43363,0.20496,0.53765,0.26423
P37037,Candida albicans,I,Oral cavity,a/α,SPI,37,0.03031,0.01226,0.06998,0.04102,0.05014,0.03619
P37039,Candida albicans,I,Bloodstream,a/α,SPI,30,0.23123,0.12379,0.18296,0.07651,0.2071,0.10569
P37039,Candida albicans,I,Bloodstream,a/α,SPI,37,0.08762,0.05006,0.06852,0.02908,0.07807,0.04203
P37039,Candida albicans,I,Bloodstream,a/α,LEE,37,0.10193,0.04626,0.05361,0.02397,0.07777,0.04405
P37039,Candida albicans,I,Bloodstream,a/α,LEE,30,0.16264,0.04631,0.1451,0.0605,0.15387,0.05458
P37039,Candida albicans,I,Bloodstream,a/α,YPD,37,0.40261,0.11039,0.40341,0.07045,0.40301,0.0926
P37039,Candida albicans,I,Bloodstream,a/α,YPD,30,0.55325,0.13944,0.55712,0.12697,0.55519,0.13336
P57055,Candida albicans,III,Bloodstream,a/α,SPI,37,0.1018,0.10917,0.10321,0.05984,0.1025,0.08804
P57055,Candida albicans,III,Bloodstream,a/α,YPD,30,0.52573,0.08604,0.49517,0.10916,0.51045,0.09946
P57055,Candida albicans,III,Bloodstream,a/α,SPI,30,0.09138,0.07086,0.09668,0.03768,0.09403,0.05681
P57055,Candida albicans,III,Bloodstream,a/α,YPD,37,0.44092,0.08319,0.47094,0.03778,0.45593,0.06632
P57055,Candida albicans,III,Bloodstream,a/α,LEE,37,0.04006,0.02071,0.09068,0.04648,0.06537,0.04399
P57055,Candida albicans,III,Bloodstream,a/α,LEE,30,0.10856,0.03489,0.21571,0.08742,0.16213,0.08544
P57072,Candida albicans,II,Bloodstream,α/α,SPI,37,0.06999,0.10789,0.00236,0.0023,0.03617,0.08346
P57072,Candida albicans,II,Bloodstream,α/α,SPI,30,0.31698,0.29241,0.08156,0.0525,0.19927,0.2408
P57072,Candida albicans,II,Bloodstream,α/α,LEE,30,0.2575,0.07505,0.44473,0.31395,0.35111,0.24671
P57072,Candida albicans,II,Bloodstream,α/α,YPD,30,0.6314,0.11966,0.58915,0.17981,0.61028,0.15418
P57072,Candida albicans,II,Bloodstream,α/α,LEE,37,0.15329,0.06512,0.15873,0.10503,0.15601,0.08742
P57072,Candida albicans,II,Bloodstream,α/α,YPD,37,0.47157,0.135,0.52886,0.18005,0.50022,0.16169
P60002,Candida albicans,SA,Bloodstream,a/a,YPD,30,0.47863,0.04573,0.5838,0.02883,0.53121,0.06501
P60002,Candida albicans,SA,Bloodstream,a/a,YPD,37,0.54455,0.22942,0.51176,0.10306,0.52816,0.1786
P60002,Candida albicans,SA,Bloodstream,a/a,SPI,30,0.20847,0.0641,0.02556,0.00252,0.11701,0.10209
P60002,Candida albicans,SA,Bloodstream,a/a,LEE,37,0.13993,0.05973,0.07499,0.03658,0.10746,0.05922
P60002,Candida albicans,SA,Bloodstream,a/a,SPI,37,0.33427,0.343,0.31403,0.21948,0.32415,0.28812
P60002,Candida albicans,SA,Bloodstream,a/a,LEE,30,0.18884,0.07321,0.20839,0.05588,0.19862,0.06585
P75010,Candida albicans,E,Bloodstream,a/α,SPI,30,0.15561,0.12283,0.19498,0.13731,0.1753,0.13175
P75010,Candida albicans,E,Bloodstream,a/α,LEE,30,0.17602,0.07286,0.20442,0.08652,0.19022,0.08123
P75010,Candida albicans,E,Bloodstream,a/α,LEE,37,0.10765,0.05497,0.05846,0.0471,0.08306,0.05679
P75010,Candida albicans,E,Bloodstream,a/α,YPD,30,0.47489,0.13595,0.50155,0.0844,0.48822,0.11393
P75010,Candida albicans,E,Bloodstream,a/α,SPI,37,0.11189,0.08451,0.13228,0.05773,0.12209,0.07309
P75010,Candida albicans,E,Bloodstream,a/α,YPD,37,0.44623,0.12472,0.51861,0.18453,0.48242,0.1616
P75016,Candida albicans,SA,Bloodstream,a/α,LEE,30,0.20169,0.07452,0.28724,0.09075,0.24446,0.0934
P75016,Candida albicans,SA,Bloodstream,a/α,YPD,30,0.48031,0.11021,0.56073,0.10101,0.52052,0.1131
P75016,Candida albicans,SA,Bloodstream,a/α,YPD,37,0.52239,0.13155,0.45116,0.07877,0.48678,0.11412
P75016,Candida albicans,SA,Bloodstream,a/α,SPI,37,0.16396,0.09244,0.10888,0.07948,0.13642,0.0905
P75016,Candida albicans,SA,Bloodstream,a/α,LEE,37,0.06247,0.02983,0.09085,0.04115,0.07666,0.03864
P75016,Candida albicans,SA,Bloodstream,a/α,SPI,30,0.20962,0.07886,0.18925,0.05945,0.19944,0.07057
P75063,Candida albicans,SA,Bloodstream,α/-,YPD,37,0.3455,0.07704,0.48618,0.11849,0.41584,0.12221
P75063,Candida albicans,SA,Bloodstream,α/-,YPD,30,0.51937,0.13251,0.72099,0.07673,0.62018,0.14794
P75063,Candida albicans,SA,Bloodstream,α/-,SPI,37,0.06425,0.01249,0.05389,0.05717,0.05907,0.0417
P75063,Candida albicans,SA,Bloodstream,α/-,LEE,37,0.16472,0.06514,0.08328,0.03977,0.124,0.0676
P75063,Candida albicans,SA,Bloodstream,α/-,SPI,30,0.03226,0.01597,0.12031,0.02159,0.07629,0.04794
P75063,Candida albicans,SA,Bloodstream,α/-,LEE,30,0.23349,0.02271,0.1584,0.01762,0.19594,0.04269
P76055,Candida albicans,II,Bloodstream,a/α,YPD,30,0.24004,0.05309,0.696,0.15599,0.46802,0.25603
P76055,Candida albicans,II,Bloodstream,a/α,LEE,30,0.32406,0.03246,0.37088,0.123,0.34747,0.09295
P76055,Candida albicans,II,Bloodstream,a/α,SPI,37,0.02649,0.01886,0.07213,0.03876,0.05388,0.03929
P76055,Candida albicans,II,Bloodstream,a/α,SPI,30,0.06731,0.05024,0.13541,0.05233,0.10136,0.06157
P76055,Candida albicans,II,Bloodstream,a/α,LEE,37,0.14465,0.04937,0.05299,0.00119,0.09882,0.05762
P76055,Candida albicans,II,Bloodstream,a/α,YPD,37,0.29302,0.04316,0.48757,0.16887,0.39029,0.15701
P76067,Candida albicans,II,Bloodstream,a/α,SPI,30,0.76981,0.26568,0.43608,0.28171,0.58777,0.32092
P76067,Candida albicans,II,Bloodstream,a/α,YPD,37,0.45448,0.11775,0.45207,0.06482,0.45328,0.09506
P76067,Candida albicans,II,Bloodstream,a/α,LEE,37,0.04013,0.03626,0.05182,0.04795,0.04597,0.04291
P76067,Candida albicans,II,Bloodstream,a/α,SPI,37,0.18256,0.12145,0.13611,0.13072,0.15934,0.12829
P76067,Candida albicans,II,Bloodstream,a/α,LEE,30,0.07391,0.06126,0.09194,0.07791,0.0821,0.06991
P76067,Candida albicans,II,Bloodstream,a/α,YPD,30,0.48709,0.06416,0.50157,0.10367,0.49499,0.08823
P78042,Candida albicans,III,Bloodstream,a/α,SPI,30,0.24403,0.12318,0.07548,0.0362,0.15975,0.12387
P78042,Candida albicans,III,Bloodstream,a/α,LEE,37,0.09,0.03182,0.0812,0.02335,0.0856,0.02825
P78042,Candida albicans,III,Bloodstream,a/α,LEE,30,0.15916,0.0304,0.26966,0.1231,0.21441,0.10532
P78042,Candida albicans,III,Bloodstream,a/α,YPD,37,0.37452,0.08104,0.543,0.1719,0.45876,0.1586
P78042,Candida albicans,III,Bloodstream,a/α,YPD,30,0.51096,0.05616,0.45124,0.12315,0.4811,0.10026
P78042,Candida albicans,III,Bloodstream,a/α,SPI,37,0.06098,0.02017,0.12882,0.12385,0.0949,0.09499
P78048,Candida albicans,I,Bloodstream,α/α,LEE,30,0.2034,0.0736,0.15831,0.04921,0.18085,0.06654
P78048,Candida albicans,I,Bloodstream,α/α,YPD,37,0.47471,0.09132,0.63763,0.15857,0.55617,0.1529
P78048,Candida albicans,I,Bloodstream,α/α,SPI,30,0.09296,0.05803,0.23065,0.16411,0.16181,0.14103
P78048,Candida albicans,I,Bloodstream,α/α,SPI,37,0.08774,0.11834,0.11535,0.0612,0.10154,0.09521
P78048,Candida albicans,I,Bloodstream,α/α,YPD,30,0.56296,0.15388,0.56255,0.10673,0.56276,0.13242
P78048,Candida albicans,I,Bloodstream,α/α,LEE,37,0.25647,0.21209,0.19529,0.2114,0.22588,0.21394
P87,Candida albicans,SA,Oral cavity,a/a,YPD,37,0.51085,0.12898,0.46492,0.20497,0.48788,0.17278
P87,Candida albicans,SA,Oral cavity,a/a,SPI,37,0.50462,0.36976,0.25544,0.19731,0.38003,0.32148
P87,Candida albicans,SA,Oral cavity,a/a,LEE,30,0.25116,0.11163,0.14601,0.04573,0.19858,0.1002
P87,Candida albicans,SA,Oral cavity,a/a,YPD,30,0.54269,0.17894,0.61894,0.10128,0.58081,0.15031
P87,Candida albicans,SA,Oral cavity,a/a,SPI,30,0.09186,0.08274,0.07591,0.02051,0.08316,0.05835
P87,Candida albicans,SA,Oral cavity,a/a,LEE,37,0.09922,0.02733,0.2285,0.20024,0.16386,0.15684
P94015,Candida albicans,I,Bloodstream,a/a,SPI,30,0.51867,0.36484,0.42939,0.20735,0.47403,0.30007
P94015,Candida albicans,I,Bloodstream,a/a,YPD,30,0.77746,0.16655,0.93399,0.10599,0.85573,0.16004
P94015,Candida albicans,I,Bloodstream,a/a,LEE,37,0.84961,0.19931,0.9488,0.0882,0.89921,0.1619
P94015,Candida albicans,I,Bloodstream,a/a,LEE,30,0.80052,0.24837,0.87906,0.13587,0.83979,0.204
P94015,Candida albicans,I,Bloodstream,a/a,YPD,37,0.82542,0.1505,0.90916,0.09297,0.8711,0.12942
P94015,Candida albicans,I,Bloodstream,a/a,SPI,37,0.4998,0.11333,0.22974,0.12861,0.36477,0.18145
SC5314,Candida albicans,I,Bloodstream,a/α,YPD,30,0.41339,0.02825,0.64693,0.03716,0.50681,0.11883
SC5314,Candida albicans,I,Bloodstream,a/α,LEE,30,0.17586,0.12293,0.39536,0.06949,0.28561,0.14838
SC5314,Candida albicans,I,Bloodstream,a/α,SPI,30,0.90286,0.07192,0.52658,0.05493,0.71472,0.19872
SC5314,Candida albicans,I,Bloodstream,a/α,SPI,37,1.0,0.0,0.8339,0.1185,0.91695,0.11797
SC5314,Candida albicans,I,Bloodstream,a/α,YPD,37,0.23814,0.19592,0.73597,0.13796,0.48706,0.30111
SC5314,Candida albicans,I,Bloodstream,a/α,LEE,37,0.45062,0.23578,0.52365,0.17176,0.48713,0.20948
SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,30,-,-,0.05697,0.02641,0.05697,0.02641
SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,37,-,-,0.85389,0.06076,0.85389,0.06076
SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,37,-,-,1.0,0.0,1.0,0.0
SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,30,-,-,0.83159,0.14958,0.83159,0.14958
SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,37,-,-,1.0,0.0,1.0,0.0
SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,30,-,-,0.91896,0.0584,0.91896,0.0584
WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,37,0.11826,0.07866,0.08255,0.02993,0.10041,0.06213
WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,30,0.09402,0.01649,0.08434,0.03859,0.08918,0.03007
WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,30,0.07615,0.02668,0.10551,0.01848,0.09083,0.02724
WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,30,0.65838,0.12181,0.7831,0.1131,0.72074,0.13305
WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,37,0.72552,0.15428,0.60079,0.06865,0.66316,0.13471
WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,37,0.17179,0.02492,0.13819,0.07767,0.15499,0.06008
biofilm_scores_sorted.csv deleted 100644 → 0
+ 0
− 185
View file @ 5266d8df
MAY Strain #,Species,Soll Clade,Isolation Site,Media,Temperature(°C),Total Average Phenotype Score,Total Phenotype Score St. Dev.
12C,Candida albicans,I,Oral cavity,LEE,30,0.095333333,0.020572365
12C,Candida albicans,I,Oral cavity,SPI,30,0.201,0.017663522
12C,Candida albicans,I,Oral cavity,YPD,30,0.687833333,0.051020965
12C,Candida albicans,I,Oral cavity,RPMIS,30,0.38825,0.051392485
12C,Candida albicans,I,Oral cavity,LEE,37,0.070166667,0.007717225
12C,Candida albicans,I,Oral cavity,SPI,37,0.091333333,0.009358597
12C,Candida albicans,I,Oral cavity,YPD,37,0.311,0.041115353
12C,Candida albicans,I,Oral cavity,RPMIS,37,0.38425,0.050662486
19F,Candida albicans,I,Vagina,LEE,30,0.116333333,0.03058322
19F,Candida albicans,I,Vagina,SPI,30,0.288833333,0.108809849
19F,Candida albicans,I,Vagina,YPD,30,0.552333333,0.026159766
19F,Candida albicans,I,Vagina,RPMIS,30,0.46975,0.061304058
19F,Candida albicans,I,Vagina,LEE,37,0.0315,0.035251478
19F,Candida albicans,I,Vagina,SPI,37,0.158166667,0.156771242
19F,Candida albicans,I,Vagina,YPD,37,0.527,0.176534935
19F,Candida albicans,I,Vagina,RPMIS,37,0.309,0.025719642
529L,Candida albicans,529L,Oral cavity,LEE,30,0.172138889,0.029546325
529L,Candida albicans,529L,Oral cavity,SPI,30,0.228333333,0.020055479
529L,Candida albicans,529L,Oral cavity,YPD,30,0.525833333,0.121769477
529L,Candida albicans,529L,Oral cavity,RPMIS,30,0.4805,0.055868148
529L,Candida albicans,529L,Oral cavity,LEE,37,0.029566667,0.004127953
529L,Candida albicans,529L,Oral cavity,SPI,37,0.047,0.017198999
529L,Candida albicans,529L,Oral cavity,YPD,37,0.222833333,0.025597309
529L,Candida albicans,529L,Oral cavity,RPMIS,37,0.33325,0.191030593
GC75,Candida albicans,SA,Oral cavity,LEE,30,0.142,0.022211108
GC75,Candida albicans,SA,Oral cavity,SPI,30,0.191666667,0.02208066
GC75,Candida albicans,SA,Oral cavity,YPD,30,0.382666667,0.021959559
GC75,Candida albicans,SA,Oral cavity,RPMIS,30,0.43125,0.036975499
GC75,Candida albicans,SA,Oral cavity,LEE,37,0.036,0.019735051
GC75,Candida albicans,SA,Oral cavity,SPI,37,0.1405,0.044180187
GC75,Candida albicans,SA,Oral cavity,YPD,37,0.739,0.154473748
GC75,Candida albicans,SA,Oral cavity,RPMIS,37,0.22875,0.125831981
L26,Candida albicans,I,Vagina,LEE,30,0.092666667,0.021644219
L26,Candida albicans,I,Vagina,SPI,30,0.240166667,0.011728408
L26,Candida albicans,I,Vagina,YPD,30,0.578,0.052860666
L26,Candida albicans,I,Vagina,RPMIS,30,0.44175,0.08934029
L26,Candida albicans,I,Vagina,LEE,37,0.0385,0.010011105
L26,Candida albicans,I,Vagina,SPI,37,0.189666667,0.084082136
L26,Candida albicans,I,Vagina,YPD,37,0.200166667,0.004818944
L26,Candida albicans,I,Vagina,RPMIS,37,0.6155,0.035654593
P34048,Candida albicans,III,Bloodstream,LEE,30,0.1875,0.013313527
P34048,Candida albicans,III,Bloodstream,SPI,30,0.2645,0.018282505
P34048,Candida albicans,III,Bloodstream,YPD,30,0.4895,0.046867722
P34048,Candida albicans,III,Bloodstream,RPMIS,30,0.48575,0.042646073
P34048,Candida albicans,III,Bloodstream,LEE,37,0.067833333,0.009994443
P34048,Candida albicans,III,Bloodstream,SPI,37,0.099666667,0.012829004
P34048,Candida albicans,III,Bloodstream,YPD,37,0.186833333,0.046366894
P34048,Candida albicans,III,Bloodstream,RPMIS,37,0.41425,0.14261377
P37005,Candida albicans,I,Oral cavity,LEE,30,0.094333333,0.013421583
P37005,Candida albicans,I,Oral cavity,SPI,30,0.271833333,0.012432037
P37005,Candida albicans,I,Oral cavity,YPD,30,0.825666667,0.018649546
P37005,Candida albicans,I,Oral cavity,RPMIS,30,0.5385,0.011412712
P37005,Candida albicans,I,Oral cavity,LEE,37,0.043,0.009788031
P37005,Candida albicans,I,Oral cavity,SPI,37,0.140166667,0.016079663
P37005,Candida albicans,I,Oral cavity,YPD,37,0.476833333,0.064052062
P37005,Candida albicans,I,Oral cavity,RPMIS,37,0.423,0.109416635
P37037,Candida albicans,I,Oral cavity,LEE,30,0.102166667,0.004633813
P37037,Candida albicans,I,Oral cavity,SPI,30,0.193,0.018015425
P37037,Candida albicans,I,Oral cavity,YPD,30,0.525666667,0.050334437
P37037,Candida albicans,I,Oral cavity,RPMIS,30,0.55625,0.008227241
P37037,Candida albicans,I,Oral cavity,LEE,37,0.116166667,0.089786166
P37037,Candida albicans,I,Oral cavity,SPI,37,0.025,0.028732966
P37037,Candida albicans,I,Oral cavity,YPD,37,0.092833333,0.039630235
P37037,Candida albicans,I,Oral cavity,RPMIS,37,0.29075,0.078499602
P37039,Candida albicans,I,Bloodstream,LEE,30,0.08,0.014302292
P37039,Candida albicans,I,Bloodstream,SPI,30,0.233166667,0.018697148
P37039,Candida albicans,I,Bloodstream,YPD,30,0.761166667,0.03512715
P37039,Candida albicans,I,Bloodstream,RPMIS,30,0.3355,0.077902182
P37039,Candida albicans,I,Bloodstream,LEE,37,0.032666667,0.007371115
P37039,Candida albicans,I,Bloodstream,SPI,37,0.081333333,0.017240134
P37039,Candida albicans,I,Bloodstream,YPD,37,0.556833333,0.214545579
P37039,Candida albicans,I,Bloodstream,RPMIS,37,0.22,0.024413111
P57055,Candida albicans,III,Bloodstream,LEE,30,0.122666667,0.01060922
P57055,Candida albicans,III,Bloodstream,SPI,30,0.243166667,0.011710631
P57055,Candida albicans,III,Bloodstream,YPD,30,0.384833333,0.014314911
P57055,Candida albicans,III,Bloodstream,RPMIS,30,0.57875,0.070669566
P57055,Candida albicans,III,Bloodstream,LEE,37,0.0255,0.008205689
P57055,Candida albicans,III,Bloodstream,SPI,37,0.2765,0.062311048
P57055,Candida albicans,III,Bloodstream,YPD,37,0.442,0.199082688
P57055,Candida albicans,III,Bloodstream,RPMIS,37,0.20675,0.067599464
P57072,Candida albicans,II,Bloodstream,LEE,30,0.142833333,0.03977611
P57072,Candida albicans,II,Bloodstream,SPI,30,0.224166667,0.099432417
P57072,Candida albicans,II,Bloodstream,YPD,30,0.522666667,0.051629019
P57072,Candida albicans,II,Bloodstream,RPMIS,30,0.3735,0.175774714
P57072,Candida albicans,II,Bloodstream,LEE,37,0.093166667,0.01338739
P57072,Candida albicans,II,Bloodstream,SPI,37,0.149166667,0.081202764
P57072,Candida albicans,II,Bloodstream,YPD,37,0.999,0.15214622
P57072,Candida albicans,II,Bloodstream,RPMIS,37,0.18625,0.044465577
P60002,Candida albicans,SA,Bloodstream,LEE,30,0.130333333,0.023534844
P60002,Candida albicans,SA,Bloodstream,SPI,30,0.200666667,0.012569805
P60002,Candida albicans,SA,Bloodstream,YPD,30,0.312,0.133677057
P60002,Candida albicans,SA,Bloodstream,RPMIS,30,0.4495,0.095348047
P60002,Candida albicans,SA,Bloodstream,LEE,37,0.093,0.056799844
P60002,Candida albicans,SA,Bloodstream,SPI,37,0.262,0.128355842
P60002,Candida albicans,SA,Bloodstream,YPD,37,0.834,0.229289967
P60002,Candida albicans,SA,Bloodstream,RPMIS,37,0.2175,0.018674849
P75010,Candida albicans,E,Bloodstream,LEE,30,0.100833333,0.028121265
P75010,Candida albicans,E,Bloodstream,SPI,30,0.251,0.129727492
P75010,Candida albicans,E,Bloodstream,YPD,30,0.549,0.043755635
P75010,Candida albicans,E,Bloodstream,RPMIS,30,0.325,0.093171884
P75010,Candida albicans,E,Bloodstream,LEE,37,0.0405,0.009616248
P75010,Candida albicans,E,Bloodstream,SPI,37,0.309833333,0.112417995
P75010,Candida albicans,E,Bloodstream,YPD,37,0.148666667,0.063838337
P75010,Candida albicans,E,Bloodstream,RPMIS,37,0.30575,0.05952468
P75016,Candida albicans,SA,Bloodstream,LEE,30,0.134166667,0.013973189
P75016,Candida albicans,SA,Bloodstream,SPI,30,0.187333333,0.014161764
P75016,Candida albicans,SA,Bloodstream,YPD,30,0.3835,0.076235199
P75016,Candida albicans,SA,Bloodstream,RPMIS,30,0.5255,0.043797831
P75016,Candida albicans,SA,Bloodstream,LEE,37,0.054166667,0.025584826
P75016,Candida albicans,SA,Bloodstream,SPI,37,0.1315,0.052787046
P75016,Candida albicans,SA,Bloodstream,YPD,37,0.055333333,0.025249862
P75016,Candida albicans,SA,Bloodstream,RPMIS,37,0.22175,0.048592052
P75063,Candida albicans,SA,Bloodstream,LEE,30,0.097833333,0.028726681
P75063,Candida albicans,SA,Bloodstream,SPI,30,0.2305,0.118026833
P75063,Candida albicans,SA,Bloodstream,YPD,30,0.481333333,0.018397615
P75063,Candida albicans,SA,Bloodstream,RPMIS,30,0.33625,0.132660045
P75063,Candida albicans,SA,Bloodstream,LEE,37,0.031333333,0.010563301
P75063,Candida albicans,SA,Bloodstream,SPI,37,0.127333333,0.049466319
P75063,Candida albicans,SA,Bloodstream,YPD,37,0.230666667,0.085450603
P75063,Candida albicans,SA,Bloodstream,RPMIS,37,0.52,0.174809897
P76055,Candida albicans,II,Bloodstream,LEE,30,0.099166667,0.022549329
P76055,Candida albicans,II,Bloodstream,SPI,30,0.185166667,0.023723523
P76055,Candida albicans,II,Bloodstream,YPD,30,0.585333333,0.059951833
P76055,Candida albicans,II,Bloodstream,RPMIS,30,0.3875,0.116879211
P76055,Candida albicans,II,Bloodstream,LEE,37,0.087833333,0.047346242
P76055,Candida albicans,II,Bloodstream,SPI,37,0.1255,0.041322579
P76055,Candida albicans,II,Bloodstream,YPD,37,1.149833333,0.061313403
P76055,Candida albicans,II,Bloodstream,RPMIS,37,0.24725,0.019651654
P76067,Candida albicans,II,Bloodstream,LEE,30,0.0745,0.026060293
P76067,Candida albicans,II,Bloodstream,SPI,30,0.229,0.090368997
P76067,Candida albicans,II,Bloodstream,YPD,30,0.547666667,0.272198253
P76067,Candida albicans,II,Bloodstream,RPMIS,30,0.4625,0.038771768
P76067,Candida albicans,II,Bloodstream,LEE,37,0,0.015227898
P76067,Candida albicans,II,Bloodstream,SPI,37,0.252666667,0.080844329
P76067,Candida albicans,II,Bloodstream,YPD,37,0.515833333,0.261253176
P76067,Candida albicans,II,Bloodstream,RPMIS,37,0.23175,0.044132613
P78042,Candida albicans,III,Bloodstream,LEE,30,0.1085,0.025751483
P78042,Candida albicans,III,Bloodstream,SPI,30,0.263666667,0.015362291
P78042,Candida albicans,III,Bloodstream,YPD,30,0.616333333,0.050002222
P78042,Candida albicans,III,Bloodstream,RPMIS,30,0.48875,0.040812835
P78042,Candida albicans,III,Bloodstream,LEE,37,0.066833333,0.017062793
P78042,Candida albicans,III,Bloodstream,SPI,37,0.265666667,0.060271607
P78042,Candida albicans,III,Bloodstream,YPD,37,0.330333333,0.219723817
P78042,Candida albicans,III,Bloodstream,RPMIS,37,0.413,0.13221006
P78048,Candida albicans,I,Bloodstream,LEE,30,0.130666667,0.009546669
P78048,Candida albicans,I,Bloodstream,SPI,30,0.227,0.010657548
P78048,Candida albicans,I,Bloodstream,YPD,30,0.7795,0.022375582
P78048,Candida albicans,I,Bloodstream,RPMIS,30,0.473,0.071417785
P78048,Candida albicans,I,Bloodstream,LEE,37,0.038666667,0.007289643
P78048,Candida albicans,I,Bloodstream,SPI,37,0.0675,0.009706813
P78048,Candida albicans,I,Bloodstream,YPD,37,0.285666667,0.064599837
P78048,Candida albicans,I,Bloodstream,RPMIS,37,0.46375,0.108596443
P87,Candida albicans,SA,Oral cavity,LEE,30,0.1075,0.013503086
P87,Candida albicans,SA,Oral cavity,SPI,30,0.198333333,0.018568941
P87,Candida albicans,SA,Oral cavity,YPD,30,0.555833333,0.046129046
P87,Candida albicans,SA,Oral cavity,RPMIS,30,0.44275,0.106062187
P87,Candida albicans,SA,Oral cavity,LEE,37,0.033666667,0.007559027
P87,Candida albicans,SA,Oral cavity,SPI,37,0.423,0.023212185
P87,Candida albicans,SA,Oral cavity,YPD,37,0.125333333,0.067227846
P87,Candida albicans,SA,Oral cavity,RPMIS,37,0.479,0.166022589
P94015,Candida albicans,I,Bloodstream,LEE,30,0.053333333,0.006497863
P94015,Candida albicans,I,Bloodstream,SPI,30,0.0115,0.003947573
P94015,Candida albicans,I,Bloodstream,YPD,30,0.226166667,0.022637849
P94015,Candida albicans,I,Bloodstream,RPMIS,30,0.127,0.107812337
P94015,Candida albicans,I,Bloodstream,LEE,37,0.069666667,0.007243771
P94015,Candida albicans,I,Bloodstream,SPI,37,0.033833333,0.008698659
P94015,Candida albicans,I,Bloodstream,YPD,37,0.052333333,0.007932003
P94015,Candida albicans,I,Bloodstream,RPMIS,37,0.0935,0.015724185
SC5314,Candida albicans,I,Bloodstream,LEE,30,0.136166667,0.015614274
SC5314,Candida albicans,I,Bloodstream,SPI,30,0.295833333,0.01332604
SC5314,Candida albicans,I,Bloodstream,YPD,30,0.942333333,0.112602546
SC5314,Candida albicans,I,Bloodstream,RPMIS,30,0.565,0.048020829
SC5314,Candida albicans,I,Bloodstream,LEE,37,0.191,0.035179303
SC5314,Candida albicans,I,Bloodstream,SPI,37,0.2955,0.018147543
SC5314,Candida albicans,I,Bloodstream,YPD,37,1.090166667,0.034047353
SC5314,Candida albicans,I,Bloodstream,RPMIS,37,0.29625,0.055169625
WO-1,Candida albicans,WO-1,Bloodstream,LEE,30,0.085166667,0.022086321
WO-1,Candida albicans,WO-1,Bloodstream,SPI,30,0.182333333,0.038016078
WO-1,Candida albicans,WO-1,Bloodstream,YPD,30,0.3555,0.085379057
WO-1,Candida albicans,WO-1,Bloodstream,RPMIS,30,0.3245,0.026537709
WO-1,Candida albicans,WO-1,Bloodstream,LEE,37,0.027,0.012212243
WO-1,Candida albicans,WO-1,Bloodstream,SPI,37,0.080833333,0.038594761
WO-1,Candida albicans,WO-1,Bloodstream,YPD,37,0.178166667,0.123078566
WO-1,Candida albicans,WO-1,Bloodstream,RPMIS,37,0.29425,0.043585405
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