Pandoc now uses singularity to run

Verify you're on login node 1/3 or you won't have access to Jeff's public

generate_docx.sh

@@ -4,8 +4,12 @@ function generate_docx(){
 	APP_DIR=$DIR/output/current/$APP
 	IN_FILE=$APP_DIR/report.md 
 	OUT_FILE=$DATA_DIR/$APP-$SHORT_DATE.docx
+
 	#pandoc
-	pandoc -f markdown -t docx -o $OUT_FILE $IN_FILE
+	img=/users/PZS0714/johrstrom/Public/images/sing/pandoc.sif
+	pandoc_args="-f markdown -t docx -o $OUT_FILE $IN_FILE"
+
+	singularity run $img $pandoc_args
 }
 
 function main(){