- Feb 19, 2017
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Tim O'Donnell authored
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- Feb 16, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
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- Feb 15, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
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- Feb 14, 2017
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Tim O'Donnell authored
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- Feb 13, 2017
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Tim O'Donnell authored
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- Feb 12, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
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- Feb 11, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
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- Feb 10, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
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- Feb 09, 2017
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Tim O'Donnell authored
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- Jan 09, 2017
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Tim O'Donnell authored
Swith to using parallel_backend.map instead of parallel_backend.submit, to be compatable with kubeface
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Tim O'Donnell authored
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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- Sep 26, 2016
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
Fixes #54
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Tim O'Donnell authored
Fixes #59
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Tim O'Donnell authored
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- Sep 16, 2016
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
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Tim O'Donnell authored
Fix bug in model loading when the models dir is changes. Refactored into a Class1AlleleSpecificPredictorLoader class
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Tim O'Donnell authored
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- Sep 15, 2016
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Tim O'Donnell authored
Fix failing test test_class1_allele_specific_cv_and_train_command and switch downloads.yml to point to models without imputation for now
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Tim O'Donnell authored
Lazily putting this all in one commit. * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command) * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone) * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`) * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors * make Class1BindingPredictor pickleable and remove old serialization code * move code particular to class 1 allele-specific predictors into its own submodule * remove unused code including arg parsing, plotting, and ensembles * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py) * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed * update README
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- Jun 24, 2016
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Alex Rubinsteyn authored
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- Jun 23, 2016
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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- Jun 03, 2016
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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