Skip to content
Snippets Groups Projects
  1. Sep 26, 2016
  2. Sep 15, 2016
    • Tim O'Donnell's avatar
      Big refactor to prepare for release · 942601b3
      Tim O'Donnell authored
      Lazily putting this all in one commit.
      
      * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command)
      * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models
      * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone)
      * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`)
      * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors
      * make Class1BindingPredictor pickleable and remove old serialization code
      * move code particular to class 1 allele-specific predictors into its own submodule
      * remove unused code including arg parsing, plotting, and ensembles
      * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py)
      * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed
      * update README
      942601b3
  3. Jun 03, 2016
  4. Jun 02, 2016
  5. May 14, 2016
  6. May 11, 2016
  7. May 06, 2016
  8. May 04, 2016
  9. Apr 28, 2016
  10. Feb 17, 2016
  11. Oct 28, 2015
  12. Oct 23, 2015
  13. Oct 17, 2015
  14. Jul 01, 2015
  15. Jun 30, 2015
  16. Jun 29, 2015
Loading