Commits · b651138e25b5ef239cf0ace15cb07d708afaeb62 · Patrick Skillman-Lawrence / mhc_rank

May 17, 2017
- Begin rewrite · 56f84119
  Tim O'Donnell authored 7 years ago
  
  pre-1.0.0-alpha
  
  56f84119
Mar 24, 2017
- Add docs · 458cb0c3
  Tim O'Donnell authored 8 years ago
  
  458cb0c3
- decrease stringency of test_basic in test_ensemble · 05d7568a
  Tim O'Donnell authored 8 years ago
  
  05d7568a
- Bug fixes and documentation · f9394145
  Tim O'Donnell authored 8 years ago
  
  f9394145
- fix linter error · ff1bbf1b
  Tim O'Donnell authored 8 years ago
  
  ff1bbf1b
- fix test_class1_allele_specific_cv_and_train_comman · c39b9fdb
  Tim O'Donnell authored 8 years ago
  
  c39b9fdb
- fix tests · 1a06153a
  Tim O'Donnell authored 8 years ago
  
  1a06153a
- Much better model serialization. Avoid regnerating peptide encoding in ensemble models. Other fixes · b7404349
  Tim O'Donnell authored 8 years ago
  
  b7404349
- fixes · cd44ff14
  Tim O'Donnell authored 8 years ago
  
  cd44ff14
- Add profling tests for ensemble models, many small fixes · b7afe9a7
  Tim O'Donnell authored 8 years ago
  
  b7afe9a7
- Update downloads.yml, several renames · 5ecb11c7
  Tim O'Donnell authored 8 years ago
  
  5ecb11c7
- rename Dataset to AffinityMeasurementDataset, fix bug in tests/test_ensemble.py · 73ad3f22
  Tim O'Donnell authored 8 years ago
  
  73ad3f22
- move measurement collection to parent module · 3e4ab623
  Tim O'Donnell authored 8 years ago
  
  3e4ab623
- Add more fields to ensemble manifest · 3f9aac8c
  Tim O'Donnell authored 8 years ago
  
  3f9aac8c
- fixes · d6bae6ae
  Tim O'Donnell authored 8 years ago
  
  d6bae6ae
- fixes · a9bac0c6
  Tim O'Donnell authored 8 years ago
  
  a9bac0c6
- fix test · 420d8b89
  Tim O'Donnell authored 8 years ago
  
  420d8b89
- Add ensemble train command · 115f85e4
  Tim O'Donnell authored 8 years ago
  
  115f85e4
- basic tests working for ensembles · 8da53293
  Tim O'Donnell authored 8 years ago
  
  8da53293
- add ensemble unit tests. Not passing currently. · d235e928
  Tim O'Donnell authored 8 years ago
  
  d235e928
Feb 16, 2017
- fix · 54b67d2b
  Tim O'Donnell authored 8 years ago
  
  54b67d2b
- more output in tests · 3c0e8626
  Tim O'Donnell authored 8 years ago
  
  3c0e8626
Feb 15, 2017
- fix · 0b466f39
  Tim O'Donnell authored 8 years ago
  
  0b466f39
- more tests · dec7c6dc
  Tim O'Donnell authored 8 years ago
  
  dec7c6dc
Feb 14, 2017
- Ensemble fitting · 9d8c9efa
  Tim O'Donnell authored 8 years ago
  
  9d8c9efa
Feb 11, 2017
- More test output · 337b1039
  Tim O'Donnell authored 8 years ago
  
  337b1039
- codes cleanup · 14cf5749
  Tim O'Donnell authored 8 years ago
  
  14cf5749
- Add test for PresentationModel · ec75a7b6
  Tim O'Donnell authored 8 years ago
  
  ec75a7b6
Feb 10, 2017
- Initial implementation of antigen presentation prediction infrastructure · dfdbd8a4
  Tim O'Donnell authored 8 years ago
  
  dfdbd8a4
- Comment tweaks · 9d5d36b0
  Tim O'Donnell authored 8 years ago
  
  9d5d36b0
Feb 09, 2017
- fix · c3cf271d
  Tim O'Donnell authored 8 years ago
  
  c3cf271d
- fixes · 2015dfd6
  Tim O'Donnell authored 8 years ago
  
  2015dfd6
Sep 26, 2016
- attempt to fix travis · a8dae372
  Tim O'Donnell authored 8 years ago
  
  a8dae372
- reorganize parallel code using ParallelBackend class · c6f884c5
  Tim O'Donnell authored 8 years ago
  
  c6f884c5
- Add mhcflurry-predict tool · d5f9f405
  Tim O'Donnell authored 8 years ago
  
  Fixes #54
  d5f9f405
- Switch off joblib in favor of concurrent.futures · 20de13c4
  Tim O'Donnell authored 8 years ago
  
  Fixes #59
  20de13c4
Sep 16, 2016
- Return the titin epitope tests back to the original more stringent threshold... · 9ff964f5
  Tim O'Donnell authored 8 years ago
  
  Return the titin epitope tests back to the original more stringent threshold of 500nm (instead of 700nm)
  9ff964f5
- Make test_imputation unit test fair by training the model with imputation for... · 8214bc49
  Tim O'Donnell authored 8 years ago
  
  Make test_imputation unit test fair by training the model with imputation for the same number of epochs as the model without imputation
  8214bc49
- Better error message · 09201ca5
  Tim O'Donnell authored 8 years ago
  
  09201ca5
Sep 15, 2016

Fix failing test test_class1_allele_specific_cv_and_train_command and switch... · 37b0585f

Tim O'Donnell authored 8 years ago

Fix failing test test_class1_allele_specific_cv_and_train_command and switch downloads.yml to point to models without imputation for now

37b0585f