Commits · 9c25aa2914b768b5d98de432824bcfeb2c441dae · Patrick Skillman-Lawrence / mhc_rank

Nov 30, 2019
- working · 9c25aa29
  Tim O'Donnell authored 5 years ago
  
  9c25aa29
Nov 29, 2019
- fix · 63482a3f
  Tim O'Donnell authored 5 years ago
  
  63482a3f
- Add multiallelic_mass_spec_batch_generator.py · db82ae8d
  Tim O'Donnell authored 5 years ago
  
  db82ae8d
Nov 21, 2019
- add aux input · 08e91772
  Tim O'Donnell authored 5 years ago
  
  08e91772
- fixes · 694e6634
  Tim O'Donnell authored 5 years ago
  
  694e6634
Nov 19, 2019
- fixes · 7205db5c
  Tim O'Donnell authored 5 years ago
  
  7205db5c
Nov 18, 2019
- updates · a2cebd98
  Tim O'Donnell authored 5 years ago
  
  a2cebd98
Nov 14, 2019
- working on ligandome · 2e8dc426
  Tim O'Donnell authored 5 years ago
  
  2e8dc426
Nov 11, 2019
- Fix make_network() in ligandome predictor · 0eb0a4e1
  Tim O'Donnell authored 5 years ago
  
  0eb0a4e1
- fix tests · 5cb3b145
  Tim O'Donnell authored 5 years ago
  
  5cb3b145
- add support for smooth maximum · 75a706f1
  Tim O'Donnell authored 5 years ago
  
  75a706f1
- better loss · 2ac1b2e3
  Tim O'Donnell authored 5 years ago
  
  2ac1b2e3
- updates · d4b6d6dd
  Tim O'Donnell authored 5 years ago
  
  d4b6d6dd
- updates · 825d7aa1
  Tim O'Donnell authored 5 years ago
  
  825d7aa1
- starting ligandome predictor · 2461116a
  Tim O'Donnell authored 5 years ago
  
  2461116a
- In train_allele_specific_models_command.py, serial run is when num jobs = 0 (not 1). · ce8a7d56
  Tim O'Donnell authored 5 years ago
  
  Fixes #149
  ce8a7d56
Oct 05, 2019
- better docs, test fix · 2e08221f
  Tim O'Donnell authored 5 years ago
  
  2e08221f
- Better inequalities test · 982c086c
  Tim O'Donnell authored 5 years ago
  
  982c086c
- Fix network merging for new architectures · da0b0073
  Tim O'Donnell authored 5 years ago
  
  da0b0073
Sep 26, 2019
- fix · 97322cb7
  Tim O'Donnell authored 5 years ago
  
  97322cb7
- fix test/test_class1_pan.py · e7123975
  Tim O'Donnell authored 5 years ago
  
  e7123975
- Fix calibrate-percentile-ranks local parallelism interaction with model stitching · 8e6c576f
  Tim O'Donnell authored 5 years ago
  
  8e6c576f
- better random negative peptides · f1d17bf0
  Tim O'Donnell authored 5 years ago
  
  f1d17bf0
Sep 25, 2019
- add random negative peptide method by_allele_equalize_nonbinders · a0b0a8a9
  Tim O'Donnell authored 5 years ago
  
  a0b0a8a9
Sep 23, 2019
- update · 9631e6f2
  Tim O'Donnell authored 5 years ago
  
  9631e6f2
Sep 18, 2019
- fix · 4a2f6a18
  Tim O'Donnell authored 5 years ago
  
  4a2f6a18
Sep 09, 2019
- fix · ce82c72a
  Tim O'Donnell authored 5 years ago
  
  ce82c72a
- rename · f99b79e8
  Tim O'Donnell authored 5 years ago
  
  f99b79e8
- better test cleanups · eef90733
  Tim O'Donnell authored 5 years ago
  
  eef90733
- Add teardown to tests to clear keras session · 05def7d2
  Tim O'Donnell authored 5 years ago
  
  05def7d2
Sep 07, 2019
- fix · f0acccff
  Tim O'Donnell authored 5 years ago
  
  f0acccff
- fix · 57edfb49
  Tim O'Donnell authored 5 years ago
  
  57edfb49
- Speed up tests. Make MHCFLURRY_OPTIMIZATION_LEVEL default to 1 instead of 0 · 24985286
  Tim O'Donnell authored 5 years ago
  
  24985286
Sep 06, 2019
- attempted fix for travis tests · 2401d7b9
  Tim O'Donnell authored 5 years ago
  
  2401d7b9
- Attempt to fix travis tests · c2f64e4f
  Tim O'Donnell authored 5 years ago
  
  c2f64e4f
- add test_released_predictors_well_correlated.py unit test · 110a0b29
  Tim O'Donnell authored 5 years ago
  
  110a0b29
- Attempt to make test/test_class1_neural_network.py more reliably not fail · 8a2bbbf9
  Tim O'Donnell authored 5 years ago
  
  8a2bbbf9
- add HPV test: test_released_predictors_on_hpv_dataset.py · 2f449b56
  Tim O'Donnell authored 5 years ago
  
  2f449b56
Sep 05, 2019
- fix · c07d80cf
  Tim O'Donnell authored 5 years ago
  
  c07d80cf
- docs · b5dca88e
  Tim O'Donnell authored 5 years ago
  
  b5dca88e