Commits · 8c8ee19b0a1e8bb952e9e57ea701e0910e0c6e73 · Patrick Skillman-Lawrence / mhc_rank · GitLab

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Oct 21, 2015
- moved fixed dataset paths into own module · 8c8ee19b
  Alex Rubinsteyn authored 9 years ago
  
  8c8ee19b
Oct 20, 2015
- no need to pass cutoff to f1 · a2857ed2
  Alex Rubinsteyn authored 9 years ago
  
  a2857ed2
Oct 19, 2015
- added combined CSVs for BLIND test dataset · 35b9d0b6
  Alex Rubinsteyn authored 9 years ago
  
  35b9d0b6
- added exec flag to scripts · 603a524d
  Alex Rubinsteyn authored 9 years ago
  
  603a524d
- added script to summarize performance on test data of multiple classifiers · 32d6b970
  Alex Rubinsteyn authored 9 years ago
  
  32d6b970
Oct 17, 2015
- added script to combine multiple test set results · 6fc1f9cd
  Alex Rubinsteyn authored 9 years ago
  
  6fc1f9cd
- moved script for evaluating predictors on separate data to different file · 6964235d
  Alex Rubinsteyn authored 9 years ago
  
  6964235d
Oct 15, 2015
- reshape test data to have one column per predictor · e2cb6c17
  Alex Rubinsteyn authored 9 years ago
  
  e2cb6c17
- adding script to load multiple test dataset · 53d5bc51
  Alex Rubinsteyn authored 9 years ago
  
  53d5bc51
Oct 14, 2015
- Merge branch 'nips-2015' of github.com:hammerlab/mhcflurry into nips-2015 · 435e7c78
  Alex Rubinsteyn authored 9 years ago
  
  435e7c78
- added binding predictions from Dataset Size and Composition paper · b9fcb8f4
  Alex Rubinsteyn authored 9 years ago
  
  b9fcb8f4
- old test vs. training changes · b2845339
  Alex Rubinsteyn authored 9 years ago
  
  b2845339
Oct 12, 2015
- updates to training vs. test model perf · f6384619
  Alex Rubinsteyn authored 9 years ago
  
  f6384619
Oct 06, 2015
- expanded default args list · 811c21f0
  Alex Rubinsteyn authored 9 years ago
  
  811c21f0
- added blind download script · 89d5a1f3
  Alex Rubinsteyn authored 9 years ago
  
  89d5a1f3
- renamed model_selection to model_selection_helpers- · 1a2704e1
  Alex Rubinsteyn authored 9 years ago
  
  1a2704e1
- getting rid of NIPS 2015 name since it's past the deadline · e6933085
  Alex Rubinsteyn authored 9 years ago
  
  e6933085
Oct 04, 2015
- added max-ic50 commandline option · 7b5ba045
  Alex Rubinsteyn authored 9 years ago
  
  7b5ba045
- added more options to model search script · 3b35c183
  Alex Rubinsteyn authored 9 years ago
  
  3b35c183
- added embedding-size · e889d8f3
  Alex Rubinsteyn authored 9 years ago
  
  e889d8f3
- skip model properties that aren't in the results file · 3b95d873
  Alex Rubinsteyn authored 9 years ago
  
  3b95d873
- split apart model selection routines from paper-specific script · f10c7abf
  Alex Rubinsteyn authored 9 years ago
  
  f10c7abf
Oct 03, 2015
- fixed small bug in pretraining · 22f3e7f0
  Alex Rubinsteyn authored 9 years ago
  
  22f3e7f0
Oct 02, 2015
- 64 dim embedding · 170fc4a0
  Alex Rubinsteyn authored 9 years ago
  
  170fc4a0
- fixed dtypes in analysis · e3c2eeab
  Alex Rubinsteyn authored 9 years ago
  
  e3c2eeab
- moving analysis into separate scripts, only qwrite header once to CSV · c7ae66da
  Alex Rubinsteyn authored 9 years ago
  
  c7ae66da
- check for duplicate allele datasets · 5f5a352c
  Alex Rubinsteyn authored 9 years ago
  
  5f5a352c
- parens around test · 71c18f5c
  Alex Rubinsteyn authored 9 years ago
  
  71c18f5c
- pulled out scoring logic into own function · 0fd52ec1
  Alex Rubinsteyn authored 9 years ago
  
  0fd52ec1
- fixed formula for F1 score, make sure to handle zero denom · 2cef74c8
  Alex Rubinsteyn authored 9 years ago
  
  2cef74c8
- look at DF before returning it · e56cb7fa
  Alex Rubinsteyn authored 9 years ago
  
  e56cb7fa
- use bigger batches for more epochs · d0946bdc
  Alex Rubinsteyn authored 9 years ago
  
  d0946bdc
- smaller minibatch size · a3c0dcd6
  Alex Rubinsteyn authored 9 years ago
  
  a3c0dcd6
- use minibatch size in both pre-training and in allele-specific models · 7d9c6d7d
  Alex Rubinsteyn authored 9 years ago
  
  7d9c6d7d
- added minibatch size param · 29d042c3
  Alex Rubinsteyn authored 9 years ago
  
  29d042c3
- added minibatch size param · cb1fdf23
  Alex Rubinsteyn authored 9 years ago
  
  cb1fdf23
- compare Glorot uniform to regular uniform · 72bccd28
  Alex Rubinsteyn authored 9 years ago
  
  72bccd28
- use smaller hidden layer size · e8566f26
  Alex Rubinsteyn authored 9 years ago
  
  e8566f26
- return boolean matrices as floats · ca41a3c8
  Alex Rubinsteyn authored 9 years ago
  
  ca41a3c8
- restricting embedding size to 32 · 4e3ea756
  Alex Rubinsteyn authored 9 years ago
  
  4e3ea756