Commits · 67f17c270313805406683e221900a7d1568fffb0 · Patrick Skillman-Lawrence / mhc_rank

Feb 06, 2018
- Swtich to parallel training, support progress bar · 67f17c27
  Tim O'Donnell authored 7 years ago
  
  67f17c27
- fix tests · 57e403e7
  Tim O'Donnell authored 7 years ago
  
  57e403e7
- add models · 04bb4cca
  Tim O'Donnell authored 7 years ago
  
  04bb4cca
- support for inequalities in train command · bbfd350d
  Tim O'Donnell authored 7 years ago
  
  bbfd350d
- First cut of mass-spec support in released models · 1a905bc8
  Tim O'Donnell authored 7 years ago
  
  1a905bc8
- update downloads · 1e8de93d
  Tim O'Donnell authored 7 years ago
  
  1e8de93d
- Attempt to fix travis build · 5aa441b6
  Tim O'Donnell authored 7 years ago
  
  5aa441b6
- Fix bug in inequality support, bump to version 1.1.0, add test · 289dbb09
  Tim O'Donnell authored 7 years ago
  
  289dbb09
- fixes · 73ddb9d2
  Tim O'Donnell authored 7 years ago
  
  73ddb9d2
- First cut at model selection and training on data with inequalities · 1a7264ba
  Tim O'Donnell authored 7 years ago
  
  1a7264ba
- Shuffle in Class1NeuralNetwork.fit · aea2f493
  Tim O'Donnell authored 7 years ago
  
  aea2f493
Dec 22, 2017
- docs update · a837de1a
  Tim O'Donnell authored 7 years ago
  
  a837de1a
Dec 21, 2017
- docs update · 6485d7dd
  Tim O'Donnell authored 7 years ago
  
  6485d7dd
- update docs · d52134fe
  Tim O'Donnell authored 7 years ago
  
  d52134fe
- more docs · 5a7a65f8
  Tim O'Donnell authored 7 years ago
  
  5a7a65f8
Dec 20, 2017
- Docs improvememnts, more flexible Keras dependency, drop typechecks... · 8cd37f08
  Tim O'Donnell authored 7 years ago
  
  Docs improvememnts, more flexible Keras dependency, drop typechecks dependency, remove some unused functions
  8cd37f08
Dec 19, 2017
- Improve docs · 95833a79
  Tim O'Donnell authored 7 years ago
  
  95833a79
- Better docstrings · ae3d7e2f
  Tim O'Donnell authored 7 years ago
  
  ae3d7e2f
Dec 10, 2017
- Refactor to simplify directory structure · 4ea4173a
  Tim O'Donnell authored 7 years ago
  
  4ea4173a
- formatting changes · 6f6070b2
  Tim O'Donnell authored 7 years ago
  
  6f6070b2
Dec 04, 2017
- Even faster peptide encoding · b2b032c7
  Tim O'Donnell authored 7 years ago
  
  b2b032c7
- Address code review comments · 0f9394e2
  Tim O'Donnell authored 7 years ago
  
  0f9394e2
- Update downloads to include new models · 6dfa6417
  Tim O'Donnell authored 7 years ago
  
  6dfa6417
Dec 01, 2017
- bump mhcflurry version · bdc672f4
  Tim O'Donnell authored 7 years ago
  
  pre-1.0
  
  bdc672f4
- lazy load keras · dd3e61e2
  Tim O'Donnell authored 7 years ago
  
  dd3e61e2
- Fix encoding for 0-length sequences · 4bb0738b
  Tim O'Donnell authored 7 years ago
  
  4bb0738b
Nov 30, 2017
- More speed efficient variable-length peptide encoding · 873a60a5
  Tim O'Donnell authored 7 years ago
  
  873a60a5
Nov 28, 2017
- fix · 7d323a86
  Tim O'Donnell authored 7 years ago
  
  7d323a86
- Add time remaining estimation to training script · f179489b
  Tim O'Donnell authored 7 years ago
  
  f179489b
- Free up memory: get rid of train data as models are trained · 672bf7fb
  Tim O'Donnell authored 7 years ago
  
  672bf7fb
- better progress printing · e062613c
  Tim O'Donnell authored 7 years ago
  
  e062613c
- Print progress no more often than once every 5 seconds while training · b1dbb362
  Tim O'Donnell authored 7 years ago
  
  b1dbb362
- Clearer output during training · c0fbebe1
  Tim O'Donnell authored 7 years ago
  
  c0fbebe1
- Experimental support for parallelization (Theano only) in train_allele_specific_models_command · 5b4dfbd2
  Tim O'Donnell authored 7 years ago
  
  5b4dfbd2
- implement Class1AffinityPredictor.merge() method · c6990666
  Tim O'Donnell authored 7 years ago
  
  c6990666
- arg tweak · ffcb693f
  Tim O'Donnell authored 7 years ago
  
  ffcb693f
- Add minibatch_size hyperparameter · 33b1b5d4
  Tim O'Donnell authored 7 years ago
  
  33b1b5d4
- Change prediction batch_size from 32 to 4096 for better performance · 38adfb4d
  Tim O'Donnell authored 7 years ago
  
  38adfb4d
Nov 27, 2017
- peptide encoding optimization · cbb649d6
  Tim O'Donnell authored 7 years ago
  
  cbb649d6
- Much faster performance (~5X improvement) in amino acid encoding · 41985338
  Tim O'Donnell authored 7 years ago
  
  41985338