Skip to content
Snippets Groups Projects
  1. Mar 20, 2020
  2. Jan 25, 2020
  3. Jan 24, 2020
  4. Dec 11, 2019
  5. Sep 05, 2019
  6. Feb 06, 2018
  7. Dec 21, 2017
  8. Dec 10, 2017
  9. Dec 01, 2017
  10. Nov 13, 2017
  11. Aug 16, 2017
  12. Aug 15, 2017
  13. Aug 03, 2017
  14. Jul 27, 2017
  15. May 24, 2017
  16. May 21, 2017
  17. May 17, 2017
  18. Mar 24, 2017
  19. Feb 09, 2017
  20. Sep 26, 2016
  21. Sep 16, 2016
  22. Sep 15, 2016
    • Tim O'Donnell's avatar
      Big refactor to prepare for release · 942601b3
      Tim O'Donnell authored
      Lazily putting this all in one commit.
      
      * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command)
      * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models
      * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone)
      * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`)
      * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors
      * make Class1BindingPredictor pickleable and remove old serialization code
      * move code particular to class 1 allele-specific predictors into its own submodule
      * remove unused code including arg parsing, plotting, and ensembles
      * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py)
      * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed
      * update README
      942601b3
  23. Apr 19, 2016
  24. Feb 18, 2016
  25. Feb 17, 2016
  26. Jun 29, 2015
Loading