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- Mar 20, 2020
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Tim O'Donnell authored
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- Jan 25, 2020
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Tim O'Donnell authored
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- Jan 24, 2020
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Tim O'Donnell authored
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- Dec 11, 2019
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Tim O'Donnell authored
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- Sep 05, 2019
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Tim O'Donnell authored
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- Feb 06, 2018
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Tim O'Donnell authored
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Tim O'Donnell authored
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- Dec 21, 2017
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Tim O'Donnell authored
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- Dec 10, 2017
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Tim O'Donnell authored
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- Dec 01, 2017
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Tim O'Donnell authored
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- Nov 13, 2017
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Tim O'Donnell authored
* Switch from JSON to YAML for hyperparameters * Pin tensorflow (hoping will help with #110)
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- Aug 16, 2017
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Tim O'Donnell authored
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- Aug 15, 2017
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Uri Laserson authored
Fixes #47.
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- Aug 03, 2017
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Tim O'Donnell authored
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- Jul 27, 2017
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Tim O'Donnell authored
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- May 24, 2017
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Tim O'Donnell authored
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- May 21, 2017
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Tim O'Donnell authored
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- May 17, 2017
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Tim O'Donnell authored
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- Mar 24, 2017
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Tim O'Donnell authored
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Tim O'Donnell authored
Switch default predictor to ensemble, fix download bug, add more imports to package-level __init__, update example ipython notebook
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- Feb 09, 2017
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Alex Rubinsteyn authored
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- Sep 26, 2016
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Tim O'Donnell authored
Fixes #59
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- Sep 16, 2016
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Tim O'Donnell authored
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- Sep 15, 2016
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Tim O'Donnell authored
Lazily putting this all in one commit. * infrastructure for downloading datasets and published trained models (the `mhcflurry-downloads` command) * docs and scripts (in `downloads-generation`) to generate the pubilshed datsets and trained models * parallelized cross validation and model training implementation, including support for imputation (based on the old mhcflurry-cloud repo, which is now gone) * a single front-end script for class1 allele-specific cross validation and model training / testing (`mhcflurry-class1-allele-specific-cv-and-train`) * refactor how we deal with hyper-parameters and how we instantiate Class1BindingPredictors * make Class1BindingPredictor pickleable and remove old serialization code * move code particular to class 1 allele-specific predictors into its own submodule * remove unused code including arg parsing, plotting, and ensembles * had to bump the binding prediction threshold for the Titin1 epitope from 500 to 700, as this test was sporadically failing for me (see test_known_class1_epitopes.py) * Attempt to make tests involving randomness somewhat more reproducible by setting numpy random seed * update README
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- Apr 19, 2016
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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- Feb 18, 2016
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Alex Rubinsteyn authored
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- Feb 17, 2016
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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- Jun 29, 2015
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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Alex Rubinsteyn authored
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