README.md

downloads-generation/allele_sequences/GENERATE.sh

...oads-generation/allele_sequences/make_allele_sequences.py

downloads-generation/data_curated/curate.py

downloads-generation/data_published/GENERATE.sh

...models_class1_pan_unselected/GENERATE.WITH_HPC_CLUSTER.sh

...loads-generation/models_class1_pan_unselected/GENERATE.sh

mhcflurry/allele_encoding.py

mhcflurry/amino_acid.py

mhcflurry/class1_affinity_predictor.py

mhcflurry/select_allele_specific_models_command.py

mhcflurry/train_allele_specific_models_command.py

test/expensive_test_pretrain_optimizable.py

test/test_class1_affinity_predictor.py

test/test_class1_neural_network.py

test/test_predict_command.py