Merge pull request #142 from openvax/safe_load

Safe load

.travis.yml

@@ -29,12 +29,12 @@ addons:
 install:
   - >
       conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
-      numpy scipy nose pandas matplotlib mkl-service theano
+      numpy scipy nose pandas matplotlib mkl-service 
   - source activate test-environment
-  - pip install tensorflow pypandoc pylint
+  - pip install tensorflow pypandoc pylint 'theano>=1.0.4'
   - pip install -r requirements.txt
   - pip install .
-  - pip install coveralls
+  - pip freeze
 env:
   global:
     - PYTHONHASHSEED=0
@@ -47,6 +47,5 @@ script:
   # download data and models, then run tests
   - mhcflurry-downloads fetch
   - mhcflurry-downloads info  # just to test this command works
-  - nosetests test -sv --with-coverage --cover-package=mhcflurry  && ./lint.sh
-after_success:
-  coveralls
+  - nosetests test -sv
+  - ./lint.sh

lint.sh

@@ -10,6 +10,6 @@ set -o errexit
 find . -name '*.py' -not -path "./docs/*" \
   | xargs pylint \
   --errors-only \
-  --disable=unsubscriptable-object,not-an-iterable,no-member
+  --disable=unsubscriptable-object,not-an-iterable,no-member,assignment-from-no-return
 
 echo 'Passes pylint check'

mhcflurry/downloads.py

@@ -50,7 +50,7 @@ def get_downloads_metadata():
     """
     global _METADATA
     if _METADATA is None:
-        _METADATA = yaml.load(resource_string(__name__, "downloads.yml"))
+        _METADATA = yaml.safe_load(resource_string(__name__, "downloads.yml"))
     return _METADATA
 
 

mhcflurry/version.py

-__version__ = "1.2.3"
+__version__ = "1.2.4"