Merge pull request #84 from hammerlab/add-class1-ensemble-rebased
Add class1 ensemble models, with model selection using imputation
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- mhcflurry/class1_allele_specific/__init__.py 7 additions, 1 deletionmhcflurry/class1_allele_specific/__init__.py
- mhcflurry/class1_allele_specific/class1_allele_specific_kmer_ic50_predictor_base.py 11 additions, 63 deletions...ecific/class1_allele_specific_kmer_ic50_predictor_base.py
- mhcflurry/class1_allele_specific/class1_binding_predictor.py 24 additions, 14 deletionsmhcflurry/class1_allele_specific/class1_binding_predictor.py
- mhcflurry/class1_allele_specific/class1_single_model_multi_allele_predictor.py 42 additions, 18 deletions...le_specific/class1_single_model_multi_allele_predictor.py
- mhcflurry/class1_allele_specific/cross_validation.py 5 additions, 5 deletionsmhcflurry/class1_allele_specific/cross_validation.py
- mhcflurry/class1_allele_specific/cv_and_train_command.py 3 additions, 3 deletionsmhcflurry/class1_allele_specific/cv_and_train_command.py
- mhcflurry/class1_allele_specific/scoring.py 7 additions, 3 deletionsmhcflurry/class1_allele_specific/scoring.py
- mhcflurry/class1_allele_specific/train.py 7 additions, 7 deletionsmhcflurry/class1_allele_specific/train.py
- mhcflurry/class1_allele_specific_ensemble/__init__.py 12 additions, 0 deletionsmhcflurry/class1_allele_specific_ensemble/__init__.py
- mhcflurry/class1_allele_specific_ensemble/class1_ensemble_multi_allele_predictor.py 791 additions, 0 deletions...ecific_ensemble/class1_ensemble_multi_allele_predictor.py
- mhcflurry/class1_allele_specific_ensemble/train_command.py 232 additions, 0 deletionsmhcflurry/class1_allele_specific_ensemble/train_command.py
- mhcflurry/common.py 2 additions, 1 deletionmhcflurry/common.py
- mhcflurry/downloads.yml 20 additions, 1 deletionmhcflurry/downloads.yml
- mhcflurry/downloads_command.py 1 addition, 1 deletionmhcflurry/downloads_command.py
- mhcflurry/ic50_predictor_base.py 3 additions, 3 deletionsmhcflurry/ic50_predictor_base.py
- mhcflurry/measurement_collection.py 217 additions, 0 deletionsmhcflurry/measurement_collection.py
- mhcflurry/parallelism.py 11 additions, 0 deletionsmhcflurry/parallelism.py
- mhcflurry/peptide_encoding.py 92 additions, 0 deletionsmhcflurry/peptide_encoding.py
- mhcflurry/predict_command.py 40 additions, 8 deletionsmhcflurry/predict_command.py
- mhcflurry/prediction.py 60 additions, 0 deletionsmhcflurry/prediction.py
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